Azospirillum thiophilum strain BV-S chromosome 7, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Azospirillum.
Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring
Submitted (14-AUG-2015) Research, New England Biolabs, 240 County Road, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP012407.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP/Quiver v. 2.3.0\nGenome Coverage :: 354\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 03:50:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,765\nCDSs (total) :: 6,656\nGenes (coding) :: 6,569\nCDSs (with protein) :: 6,569\nGenes (RNA) :: 109\nrRNAs :: 8, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 9, 9 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 4\nPseudo Genes (total) :: 87\nCDSs (without protein) :: 87\nPseudo Genes (ambiguous residues) :: 0 of 87\nPseudo Genes (frameshifted) :: 25 of 87\nPseudo Genes (incomplete) :: 66 of 87\nPseudo Genes (internal stop) :: 10 of 87\nPseudo Genes (multiple problems) :: 12 of 87\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
bacterial mat of the sulfide spring 'Shameless Bath'
Russia: Stavropol Krai, North Caucasus region
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012631283.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014200337.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012975437.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200228.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019421.2
type II toxin-antitoxin system HipA family toxin
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076611832.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012340144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190068.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_014190067.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190066.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190065.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014190064.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190063.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190062.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190061.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190060.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190059.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016602.2
COORDINATES: similar to AA sequence:RefSeq:WP_012976622.1
COORDINATES: protein motif:HMM:TIGR04325.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190069.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014190070.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014190071.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190074.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978688.1
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611729.1
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_014190079.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190080.1
COORDINATES: similar to AA sequence:RefSeq:WP_007088318.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189853.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189854.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189855.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189856.1
COORDINATES: protein motif:HMM:NF025720.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189857.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189860.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189861.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189862.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014189863.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014189864.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189865.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189866.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189867.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189868.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189869.1
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189871.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189872.1
COORDINATES: protein motif:HMM:NF013382.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189874.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189875.1
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF024214.2
phosphocholine cytidylyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189877.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189878.1
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189880.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189881.1
COORDINATES: protein motif:HMM:NF015527.2
sulfotransferase family 2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189885.1
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_014189886.1
GO:0017061 - S-methyl-5-thioadenosine phosphorylase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189887.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189889.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189890.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014189892.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189893.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189894.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189895.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189896.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189897.1
COORDINATES: similar to AA sequence:RefSeq:WP_011382605.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189899.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189900.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189901.1
WavE lipopolysaccharide synthesis family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189903.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189904.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189905.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189906.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189907.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189908.1
GO:0005615 - extracellular space [Evidence IEA]
M10 family metallopeptidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189909.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189912.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012978670.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012978669.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025611.2
autotransporter-associated beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189916.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189917.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189918.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016306.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189919.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088218.1
COORDINATES: protein motif:HMM:NF040570.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189920.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189921.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611714.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
COORDINATES: similar to AA sequence:RefSeq:WP_011515356.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_011930825.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_020591763.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03573.1
COORDINATES: protein motif:HMM:NF013168.2
imidazole glycerol phosphate synthase cyclase subunit
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:TIGR04371.1
GO:0008171 - O-methyltransferase activity [Evidence IEA]
GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015087.2
N-acetylneuraminate synthase family protein
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF014409.2
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF017522.2
TylF/MycF/NovP-related O-methyltransferase
COORDINATES: protein motif:HMM:NF016908.2
COORDINATES: protein motif:HMM:NF024914.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189945.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189946.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978581.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189949.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013044.2
RHO alpha subunit C-terminal catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189950.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189951.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189952.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:TIGR02293.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189953.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012978575.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189956.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189958.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189959.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189960.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189961.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189962.1
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF013630.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189992.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978564.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189996.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014198686.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014198164.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
carbohydrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189998.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978560.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190000.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978558.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978557.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190004.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_014190005.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
COORDINATES: similar to AA sequence:RefSeq:WP_012565411.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190007.1
GO:0018193 - peptidyl-amino acid modification [Evidence IEA]
aspartyl/asparaginyl beta-hydroxylase domain-containing protein
COORDINATES: protein motif:HMM:NF012869.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190008.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978551.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190011.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_012978719.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190015.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190016.1
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: similar to AA sequence:RefSeq:WP_014190018.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190020.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890595.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019012696.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190023.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_014190024.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012978712.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190026.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190027.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190028.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190029.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008890460.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_012978661.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_014190032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242252.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007435338.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_014190034.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978663.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190038.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190041.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975035.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190043.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014190044.1
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011388781.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014190047.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190048.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190050.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168896.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014188825.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188824.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188550.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188551.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188552.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188553.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978198.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188555.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978196.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978193.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190054.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190055.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190058.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611246.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188732.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007068908.1
IS66-like element ISAli15 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076612228.1