Paenibacillus xylanexedens strain PAMC 22703 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
Complete genome sequence of Paenibacillus xylanexedens PAMC 22703 isolated from sediments of the Kara Sea
Submitted (08-DEC-2016) Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Incheon 21990, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP018621.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: OCT-2016\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:02:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,193\nCDSs (total) :: 6,050\nGenes (coding) :: 5,980\nCDSs (with protein) :: 5,980\nGenes (RNA) :: 143\nrRNAs :: 12, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 12, 12 (5S, 16S, 23S)\ntRNAs :: 103\nncRNAs :: 4\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 37 of 70\nPseudo Genes (incomplete) :: 26 of 70\nPseudo Genes (internal stop) :: 16 of 70\nPseudo Genes (multiple problems) :: 7 of 70\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018886163.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019914206.1
COORDINATES: similar to AA sequence:RefSeq:WP_014599945.1
COORDINATES: similar to AA sequence:RefSeq:WP_009594144.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_006211848.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024108.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: protein motif:HMM:NF024062.2
TcpE family conjugal transfer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_017474145.1
COORDINATES: similar to AA sequence:RefSeq:WP_016089814.1
reverse transcriptase/maturase family protein
COORDINATES: protein motif:HMM:NF013700.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF023805.2
COORDINATES: similar to AA sequence:RefSeq:WP_002204990.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010495965.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014970859.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019639170.1
COORDINATES: similar to AA sequence:RefSeq:WP_013369263.1
COORDINATES: similar to AA sequence:RefSeq:WP_006211814.1
COORDINATES: similar to AA sequence:RefSeq:WP_019688401.1