Tetragenococcus osmophilus strain JCM 31126 plasmid pTO1, complete sequence.
type: Entry
definition: Tetragenococcus osmophilus strain JCM 31126 plasmid pTO1, complete sequence.
sequence version: NZ_CP027784.1
sequence date: 2023-03-13
sequence: sequence
division: CON
label: NZ_CP027784.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08714450
keyword: RefSeq
source: Tetragenococcus osmophilus
organism: Tetragenococcus osmophilus
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Tetragenococcus.
reference: 1
references: 21357458
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP027784.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP3 v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 366.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 12:55:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,297\nCDSs (total) :: 2,217\nGenes (coding) :: 2,157\nCDSs (with protein) :: 2,157\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 16 of 60\nPseudo Genes (incomplete) :: 34 of 60\nPseudo Genes (internal stop) :: 18 of 60\nPseudo Genes (multiple problems) :: 8 of 60\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 27566
topology: circular
so has quality: SO_0000988
location: 1..27566
location: region:1-27566:1
RO_0002162: 526944

NZ_CP027784
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08714450
type: BioSample
SIO_000068: biosample

1
title: Characterization of Tetragenococcus strains from sugar thick juice reveals a novel species, Tetragenococcus osmophilus sp. nov., and divides Tetragenococcus halophilus into two subspecies, T. halophilus subsp. halophilus subsp. nov. and T. halophilus subsp. flandriensis subsp. nov
author: Juste, A.
author: Van Trappen, S.
author: Verreth, C.
author: Cleenwerck, I.
author: De Vos, P.
author: Lievens, B.
author: Willems, K.A.
journal: Int J Syst Evol Microbiol 62 (Pt 1), 129-137 (2012)
pubmed: 21357458

21357458
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Jeon, C.O.
journal: Submitted (15-MAR-2018) Life Science, Chung-Ang University, 84, Heukseok-Ro, Dongjak-Gu, Seoul 156-756, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27566:1
position: 27566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27566:1:source
so part of: sequence
organism: Tetragenococcus osmophilus
mol type: genomic DNA
strain: JCM 31126
isolation source: degraded sugar thick juice
culture collection: JCM:31126
type material: type strain of Tetragenococcus osmophilus
plasmid: pTO1
country: Belgium: Flanders, Tienen
collection date: 2006-07-14

526944
type: Taxonomy
SIO_000068: taxonomy

C7K38_RS11105
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11105
old locus tag: C7K38_11110
so part of: sequence
location: join(27169..27566,1..1051)
location: region:1-27566:1
so has part: feature:27169-27566:1:exon
so has part: feature:1-1051:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:27169-27566:1:exon

position:27169:1
position: 27169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1051:1:exon

position:1051:1
position: 1051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C7K38_RS11105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11105
old locus tag: C7K38_11110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004271063.1
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease subunit
translation: MFSKPIFKQSIKTNWKLWAIITIVASVILSGFIIGYDAAGYASIATAAEGTAFSSLLSSMDSLLGNLENFYKLIALILGIVYVVFTANTLVVSKVDSGSMAYTLSTPIKRSSVIFTKSLYLILSVILMYVIVSLAGLGASQLQYNNVTGYPITEDIEKASETLDKSEGYLSEHLYLIKDNEQAMRDAAEARDMDLDAYSIYLGEVIKDHSYEEAAEIITDERWDIYEDDDDMEDDDIEITTEELIENPAMILTSNDALTAGASVQGISVNEYRQFLADEITALEAEKNEENKEKSQPNDELLLQAVIDSSAKALNMNSAQVEDNLILIKDSTALEASMKATDLNEEQIITMANHAMVSSARSVDAALEFDTETYFWLSLGLLILILAMSSVSFFASTLFNRSGLALAIGGGIPFAFFLLTMVQQLMDDAPVILEYLTITTLFDTDAILASGEFGWGLVALGTIAFVLYAASNVIFTKKDLPL
SIO_010081: C7K38_RS11105
subclass of: SO_0000673
so part of: C7K38_RS11105
location: join(27169..27566,1..1051)
location: region:1-27566:1
so has part: feature:27169-27566:1:exon
so has part: feature:1-1051:1:exon

WP_123936723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27169-27566:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1051:1:exon

C7K38_RS11110
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11110
old locus tag: C7K38_11115
pseudo: true
so part of: sequence
location: 1448..2022
location: region:1448-2022:1
so has part: feature:1448-2022:1:exon
subclass of: SO_0000010

position:1448:1
position: 1448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2022:1
position: 2022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1448-2022:1:exon

C7K38_RS11110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11110
old locus tag: C7K38_11115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003706982.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA starvation/stationary phase protection protein
SIO_010081: C7K38_RS11110
subclass of: SO_0000673
so part of: C7K38_RS11110
location: 1448..2022
location: region:1448-2022:1
so has part: feature:1448-2022:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1448-2022:1:exon

C7K38_RS11115
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11115
old locus tag: C7K38_11120
pseudo: true
so part of: sequence
location: complement(2092..2779)
location: region:2092-2779:-1
so has part: feature:2092-2779:-1:exon
subclass of: SO_0000010

position:2092:-1
position: 2092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2779:-1
position: 2779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2092-2779:-1:exon

C7K38_RS11115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11115
old locus tag: C7K38_11120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012477736.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6-like element ISS1N family transposase
SIO_010081: C7K38_RS11115
subclass of: SO_0000673
so part of: C7K38_RS11115
location: complement(2092..2779)
location: region:2092-2779:-1
so has part: feature:2092-2779:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2092-2779:-1:exon

C7K38_RS11125
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11125
old locus tag: C7K38_11130
so part of: sequence
location: 3360..3932
location: region:3360-3932:1
so has part: feature:3360-3932:1:exon
subclass of: SO_0000010

position:3360:1
position: 3360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3932:1
position: 3932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3360-3932:1:exon

C7K38_RS11125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11125
old locus tag: C7K38_11130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003706982.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA starvation/stationary phase protection protein
translation: MTENKATQERTPQERLQEEQEHKEHVHHTKINAAAIADHLLGNMHTLHVKLHQYHWYVKGANFFTLHEKFEELYNENEKWFDKLAERLITSGHKPASTTVEFEKYSMLSEDAVNKYAKAEDMVENIIEDFRSTRDLTIRAIRLAQDEGDDALEDTLIAFKNDLDKNIWMLQAFIGKEALEDDDALDEDED
SIO_010081: C7K38_RS11125
subclass of: SO_0000673
so part of: C7K38_RS11125
location: 3360..3932
location: region:3360-3932:1
so has part: feature:3360-3932:1:exon

WP_002292150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3360-3932:1:exon

C7K38_RS11130
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11130
old locus tag: C7K38_11135
so part of: sequence
location: 4077..4781
location: region:4077-4781:1
so has part: feature:4077-4781:1:exon
subclass of: SO_0000010

position:4077:1
position: 4077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4781:1
position: 4781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4077-4781:1:exon

C7K38_RS11130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11130
old locus tag: C7K38_11135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011476586.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Crp/Fnr family transcriptional regulator
translation: MTKHTHHEIGDHAACIRLVPIFNHLEDSAMNYIAEKAHTKQYQKGEFLFRSQEKEDTLYIINRGKIRIYRLADSGKEQLVRILNPGDFTGEWTLFNPDAMHEEYAEATRDTVVCMIQQKDVQDFLEQYPAISLKLLAEMSKRLESSERQTTQVAVESVITRLVLFLAENVEPEMGNSPTITLPMAKKDIASYLGTTPETISRQFGELEDEGLIQQLSGKRIKIQDLDDLLLYSE
SIO_010081: C7K38_RS11130
subclass of: SO_0000673
so part of: C7K38_RS11130
location: 4077..4781
location: region:4077-4781:1
so has part: feature:4077-4781:1:exon

WP_123936724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4077-4781:1:exon

C7K38_RS11135
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11135
old locus tag: C7K38_11140
pseudo: true
so part of: sequence
location: <4850..5572
location: region:4850-5572:1
so has part: feature:4850-5572:1:exon
subclass of: SO_0000010

position:4850:1
position: 4850
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5572:1
position: 5572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4850-5572:1:exon

C7K38_RS11135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11135
old locus tag: C7K38_11140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003703264.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: HAD-IC family P-type ATPase
SIO_010081: C7K38_RS11135
subclass of: SO_0000673
so part of: C7K38_RS11135
location: <4850..5572
location: region:4850-5572:1
so has part: feature:4850-5572:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4850-5572:1:exon

C7K38_RS11140
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11140
old locus tag: C7K38_11145
so part of: sequence
location: 5599..5916
location: region:5599-5916:1
so has part: feature:5599-5916:1:exon
subclass of: SO_0000010

position:5599:1
position: 5599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5916:1
position: 5916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5599-5916:1:exon

C7K38_RS11140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11140
old locus tag: C7K38_11145
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKYTEIHEKLDFLLEDHGVKFDDSRLDKQTLHSLHVKADKLLKAHKCTIPEGDESVGALQPKLDMLISGHGKRFDDSGLDLKNLDTVIEKLKVLTDAHGEHRKD
SIO_010081: C7K38_RS11140
subclass of: SO_0000673
so part of: C7K38_RS11140
location: 5599..5916
location: region:5599-5916:1
so has part: feature:5599-5916:1:exon

WP_123936725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5599-5916:1:exon

C7K38_RS11145
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11145
old locus tag: C7K38_11150
so part of: sequence
location: 6099..6794
location: region:6099-6794:1
so has part: feature:6099-6794:1:exon
subclass of: SO_0000010

position:6099:1
position: 6099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6794:1
position: 6794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6099-6794:1:exon

C7K38_RS11145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11145
old locus tag: C7K38_11150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014125702.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6448 family protein
translation: MKMNVKAILGVTAAGAGLFFANPLTVEAHCDTEQGPVYESLQASLEDGNFDHIAHWVPEEQEEELKDYYDRALSVKDKTEDKEINALAEDYVFENFVRIHRAGEGAPYTGISEEPVDPGIAAADESIARESLAPLEEGGFVTAENREHVEEVFTDLLETKDFEIADTEAGREYVEDYVTFTHLFEEGHEEEHDSQTEKYDTYEEEHDAHAEEVHQEETKGNWFTNLFSSWF
SIO_010081: C7K38_RS11145
subclass of: SO_0000673
so part of: C7K38_RS11145
location: 6099..6794
location: region:6099-6794:1
so has part: feature:6099-6794:1:exon

WP_123936726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6099-6794:1:exon

C7K38_RS11150
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11150
old locus tag: C7K38_11155
so part of: sequence
location: 6903..7136
location: region:6903-7136:1
so has part: feature:6903-7136:1:exon
subclass of: SO_0000010

position:6903:1
position: 6903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7136:1
position: 7136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6903-7136:1:exon

C7K38_RS11150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11150
old locus tag: C7K38_11155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation transporter
translation: MSKAVIALETLSCPSCLKKIENAVKGLNGIDQNSVRGVFNVSKIRIDFDEKMVTIEDVEKVIEDLGYPVIKSKVKAA
SIO_010081: C7K38_RS11150
subclass of: SO_0000673
so part of: C7K38_RS11150
location: 6903..7136
location: region:6903-7136:1
so has part: feature:6903-7136:1:exon

WP_123936727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6903-7136:1:exon

C7K38_RS11155
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11155
old locus tag: C7K38_11160
so part of: sequence
location: 7442..7675
location: region:7442-7675:1
so has part: feature:7442-7675:1:exon
subclass of: SO_0000010

position:7442:1
position: 7442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7675:1
position: 7675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7442-7675:1:exon

C7K38_RS11155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11155
old locus tag: C7K38_11160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy-metal-associated domain-containing protein
translation: MSKATIKLETLSCPSCLQKIESAVKGLDGIDKNSVKVLFNSSKVKTNFEEDKIAIEEIKKAIEDLGYPIIKSKVKAA
SIO_010081: C7K38_RS11155
subclass of: SO_0000673
so part of: C7K38_RS11155
location: 7442..7675
location: region:7442-7675:1
so has part: feature:7442-7675:1:exon

WP_123936728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7442-7675:1:exon

C7K38_RS11160
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11160
old locus tag: C7K38_11165
so part of: sequence
location: 7702..7995
location: region:7702-7995:1
so has part: feature:7702-7995:1:exon
subclass of: SO_0000010

position:7702:1
position: 7702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7995:1
position: 7995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7702-7995:1:exon

C7K38_RS11160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11160
old locus tag: C7K38_11165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013711893.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron-sulfur cluster repair di-iron protein, ric
translation: MTTFNQAVKNYFPKLKFFTLAITRAHGQNHPEVFEVRDLFKTMNKKTRKAKKSKPNLDTEFVRLRDITNHYTIPSDACEAYTAVYTMLSEVDEAYQG
SIO_010081: C7K38_RS11160
subclass of: SO_0000673
so part of: C7K38_RS11160
location: 7702..7995
location: region:7702-7995:1
so has part: feature:7702-7995:1:exon

WP_123936729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7702-7995:1:exon

C7K38_RS11165
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11165
old locus tag: C7K38_11170
so part of: sequence
location: 8017..8250
location: region:8017-8250:1
so has part: feature:8017-8250:1:exon
subclass of: SO_0000010

position:8017:1
position: 8017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8250:1
position: 8250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8017-8250:1:exon

C7K38_RS11165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11165
old locus tag: C7K38_11170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy-metal-associated domain-containing protein
translation: MSKATIKLETLSCPSCLQKIESAVKGLDGIDKNSVKVLFNSSKVKTNFEEDKIAIEEIKKAIEDLGYPIIKSKVKAA
SIO_010081: C7K38_RS11165
subclass of: SO_0000673
so part of: C7K38_RS11165
location: 8017..8250
location: region:8017-8250:1
so has part: feature:8017-8250:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8017-8250:1:exon

C7K38_RS11170
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11170
old locus tag: C7K38_11175
so part of: sequence
location: 8277..8570
location: region:8277-8570:1
so has part: feature:8277-8570:1:exon
subclass of: SO_0000010

position:8277:1
position: 8277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8570:1
position: 8570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8277-8570:1:exon

C7K38_RS11170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11170
old locus tag: C7K38_11175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013711893.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron-sulfur cluster repair di-iron protein, ric
translation: MTTFNQAVKNYFPKLKFFTLAITRAHGQNHPEVFEVRDLFKTMNKKTRKAKKSKPNLDTEFVRLRDITNHYTIPSDACEAYTAVYTMLSEVDEAYQG
SIO_010081: C7K38_RS11170
subclass of: SO_0000673
so part of: C7K38_RS11170
location: 8277..8570
location: region:8277-8570:1
so has part: feature:8277-8570:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8277-8570:1:exon

C7K38_RS11175
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11175
old locus tag: C7K38_11180
so part of: sequence
location: 8592..8825
location: region:8592-8825:1
so has part: feature:8592-8825:1:exon
subclass of: SO_0000010

position:8592:1
position: 8592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8825:1
position: 8825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8592-8825:1:exon

C7K38_RS11175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11175
old locus tag: C7K38_11180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy-metal-associated domain-containing protein
translation: MSKATIKLETLSCPSCLQKIESAVKGLDGIDKNSVKVLFNSSKVKANFEEDKIAIEEIEKAIEDLGYPVIKSKVKAA
SIO_010081: C7K38_RS11175
subclass of: SO_0000673
so part of: C7K38_RS11175
location: 8592..8825
location: region:8592-8825:1
so has part: feature:8592-8825:1:exon

WP_123936730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8592-8825:1:exon

C7K38_RS11180
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11180
old locus tag: C7K38_11185
so part of: sequence
location: 8925..9485
location: region:8925-9485:1
so has part: feature:8925-9485:1:exon
subclass of: SO_0000010

position:8925:1
position: 8925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9485:1
position: 9485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8925-9485:1:exon

C7K38_RS11180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11180
old locus tag: C7K38_11185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016897248.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA starvation/stationary phase protection protein
translation: MAQDKTPQERLQEEQEHKEHVHYTKINAAAIADHILGNIHTLHVKLHQYHWYVKGPHFFSLHEQLEELYNANEEWFDEISERLLASGYKPASTTAEFEEYTMLSEDPADKYLKAEEMVENVVEDFRSTREFTVRAIRLAQEEGNDALEDTLIAFKDHLDESIWMLQAFLGKEALEDDDAYEDEDED
SIO_010081: C7K38_RS11180
subclass of: SO_0000673
so part of: C7K38_RS11180
location: 8925..9485
location: region:8925-9485:1
so has part: feature:8925-9485:1:exon

WP_123936731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8925-9485:1:exon

C7K38_RS11185
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11185
old locus tag: C7K38_11190
so part of: sequence
location: 9475..10140
location: region:9475-10140:1
so has part: feature:9475-10140:1:exon
subclass of: SO_0000010

position:9475:1
position: 9475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10140:1
position: 10140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9475-10140:1:exon

C7K38_RS11185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11185
old locus tag: C7K38_11190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016853407.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glyceraldehyde-3-phosphate dehydrogenase
translation: MKTKKVIISAPTKDEETKVVVFGVNQEILSPSDKIISAASCTTNGLALMTKILVDEFGIQRGLMSGSRAYTATQNMQDAPGGRKSRAGTQNVIPVTTGAANALGKVIPEVKGIITGTTIRVPVITAGFVELFSVLDREVTVDQINEVMKAAANDSYGYTEDEIVSSDVVGVTHGSVFDATLTEVLDANGGQLVKTVAWYDNEYGFVSNLVRLTEYVSRLNK
SIO_010081: C7K38_RS11185
subclass of: SO_0000673
so part of: C7K38_RS11185
location: 9475..10140
location: region:9475-10140:1
so has part: feature:9475-10140:1:exon

WP_227874591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9475-10140:1:exon

C7K38_RS11190
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11190
old locus tag: C7K38_11195
so part of: sequence
location: 10172..10366
location: region:10172-10366:1
so has part: feature:10172-10366:1:exon
subclass of: SO_0000010

position:10172:1
position: 10172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10366:1
position: 10366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10172-10366:1:exon

C7K38_RS11190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11190
old locus tag: C7K38_11195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003141178.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF308 domain-containing protein
translation: MSNTTGQWLGWIGILVGIIAFFWQPVWMGVAAVVLGIIGLFSPQKGLNWAAIIIGAIALVLPLL
SIO_010081: C7K38_RS11190
subclass of: SO_0000673
so part of: C7K38_RS11190
location: 10172..10366
location: region:10172-10366:1
so has part: feature:10172-10366:1:exon

WP_003142315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10172-10366:1:exon

C7K38_RS11725
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11725
old locus tag: C7K38_11200
pseudo: true
so part of: sequence
location: 10446..>10565
location: region:10446-10565:1
so has part: feature:10446-10565:1:exon
subclass of: SO_0000010

position:10446:1
position: 10446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10565:1
position: 10565
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10446-10565:1:exon

C7K38_RS11725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11725
old locus tag: C7K38_11200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002478556.1
note: catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class I fructose-bisphosphate aldolase
SIO_010081: C7K38_RS11725
subclass of: SO_0000673
so part of: C7K38_RS11725
location: 10446..>10565
location: region:10446-10565:1
so has part: feature:10446-10565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10446-10565:1:exon

C7K38_RS11200
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11200
old locus tag: C7K38_11205
so part of: sequence
location: 10591..10824
location: region:10591-10824:1
so has part: feature:10591-10824:1:exon
subclass of: SO_0000010

position:10591:1
position: 10591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10824:1
position: 10824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10591-10824:1:exon

C7K38_RS11200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11200
old locus tag: C7K38_11205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation transporter
translation: MEKAILQLETLSCPSCMQKIEGAVKSVNGVDKDSLKVLFNSSKVKTNFDSAVTSIEEIQKAIENVGYPVLKTKVKAA
SIO_010081: C7K38_RS11200
subclass of: SO_0000673
so part of: C7K38_RS11200
location: 10591..10824
location: region:10591-10824:1
so has part: feature:10591-10824:1:exon

WP_123936732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10591-10824:1:exon

C7K38_RS11205
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11205
old locus tag: C7K38_11210
so part of: sequence
location: 11022..12884
location: region:11022-12884:1
so has part: feature:11022-12884:1:exon
subclass of: SO_0000010

position:11022:1
position: 11022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12884:1
position: 12884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11022-12884:1:exon

C7K38_RS11205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11205
old locus tag: C7K38_11210
EC number: 7.2.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016897252.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MQQYILSKKNVITVISGLLIALGFFSHFVLENVGLSEWSLIIASVFGITPIAIQAFQAMKVKVISIDVLVSIAAIGALFIQNYEESAIVTFLFLFGHYLEQRTLNQTRSAIKGLTEMAPESALKQMDNGEFEEVDVDDIDEGDILLVKTGAKVPVDGIVLTGEGHINEASITGEAVPVNKQADAEVFAGTILENGTIQIRADRVGEDTTFGKIIELVEEAQDSKSEAERFIDRFSKYYTPAVLVLAIVVWAFSQNIELAITILVLGCPGALVIGVPVSNVAGIGNGARSGILLKGSEVIQDFSNVDTIVFDKTGTLTVGNPTVAATELYEKDSAETLGYLASVERESDHPLAKAVLNQIGETDFYPVEGTEAVKGGGIVSSVAGHRVAVGNVALMEKENVTLSKKVQKDVKRFEQQGNSLVLTAVDGELKVLMGIRDQVRPGVKANLQELKDLGVKNLVVLSGDNQATVDVVAGELGLTEAHGHMLPEDKSAYIGKLQQRGQIVAFVGDGVNDSPSLALADIGIAMGSGTDVAIETSDVVLMNSNFSNLPHALGLVKATANNMKQNIVISIGVVLVLLTSVFFSEWMNMSIGMLVHEGSILAVIFNGMRLMKYKLKGRKE
SIO_010081: C7K38_RS11205
subclass of: SO_0000673
so part of: C7K38_RS11205
location: 11022..12884
location: region:11022-12884:1
so has part: feature:11022-12884:1:exon

WP_123936733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11022-12884:1:exon

C7K38_RS11210
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11210
old locus tag: C7K38_11215
so part of: sequence
location: 13266..13817
location: region:13266-13817:1
so has part: feature:13266-13817:1:exon
subclass of: SO_0000010

position:13266:1
position: 13266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13817:1
position: 13817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13266-13817:1:exon

C7K38_RS11210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11210
old locus tag: C7K38_11215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005876259.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MSYNVQPLRTQQEINDFLFCLRRNKNAERDVFLFLIGINSGLRMSDIVKLKKKDVISSKNPRIVEQKTGKTRILYLSSLQELIQDYTKDLEPEDYLFPSTKGGHLEVNTVYQMFQKVAALLDRDDIGTHTLRKTFGYHYYKKTKDVATLMEIFGHSSEKITKRYIGINEDEISETLLNFRLGF
SIO_010081: C7K38_RS11210
subclass of: SO_0000673
so part of: C7K38_RS11210
location: 13266..13817
location: region:13266-13817:1
so has part: feature:13266-13817:1:exon

WP_023179913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13266-13817:1:exon

C7K38_RS11215
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11215
old locus tag: C7K38_11220
so part of: sequence
location: complement(13916..14473)
location: region:13916-14473:-1
so has part: feature:13916-14473:-1:exon
subclass of: SO_0000010

position:13916:-1
position: 13916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14473:-1
position: 14473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13916-14473:-1:exon

C7K38_RS11215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11215
old locus tag: C7K38_11220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002351084.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
translation: MAEKTIKELADEIGVSKTAIHKKVTPDMRKSFFSKVGNKFVISEEGQEVIKSTFIIPFSETGNRKPETANLKTKETTSENTQTKPITSATKSKTTTTSTVPENNLSETAIKIIEGYQKQLEQKDLQLSELHKLLNQQQQLTLHSNQQNERLQLQLESYENMQSNPSDSEIEPDQSKQKKWWKFWK
SIO_010081: C7K38_RS11215
subclass of: SO_0000673
so part of: C7K38_RS11215
location: complement(13916..14473)
location: region:13916-14473:-1
so has part: feature:13916-14473:-1:exon

WP_123936734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13916-14473:-1:exon

C7K38_RS11220
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11220
old locus tag: C7K38_11225
so part of: sequence
location: complement(14482..14838)
location: region:14482-14838:-1
so has part: feature:14482-14838:-1:exon
subclass of: SO_0000010

position:14482:-1
position: 14482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14838:-1
position: 14838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14482-14838:-1:exon

C7K38_RS11220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11220
old locus tag: C7K38_11225
inference: COORDINATES: protein motif:HMM:NF018169.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQQNHPEYQKDKAQQEQERQNLFNKAVQSKYTTLLGENFLIGFRDMQDVSRMADLQKQVYPLYDELKDLRGLNGVKDHISYVAAHKDGASIQLRNVVKYLKRSIEQYLQTVKIQDLDG
SIO_010081: C7K38_RS11220
subclass of: SO_0000673
so part of: C7K38_RS11220
location: complement(14482..14838)
location: region:14482-14838:-1
so has part: feature:14482-14838:-1:exon

WP_227874590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14482-14838:-1:exon

C7K38_RS11225
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11225
old locus tag: C7K38_11230
so part of: sequence
location: 14900..15580
location: region:14900-15580:1
so has part: feature:14900-15580:1:exon
subclass of: SO_0000010

position:14900:1
position: 14900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15580:1
position: 15580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14900-15580:1:exon

C7K38_RS11225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11225
old locus tag: C7K38_11230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVVLGIPA
SIO_010081: C7K38_RS11225
subclass of: SO_0000673
so part of: C7K38_RS11225
location: 14900..15580
location: region:14900-15580:1
so has part: feature:14900-15580:1:exon

WP_168712013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14900-15580:1:exon

C7K38_RS11230
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11230
old locus tag: C7K38_11235
so part of: sequence
location: 15652..16089
location: region:15652-16089:1
so has part: feature:15652-16089:1:exon
subclass of: SO_0000010

position:15652:1
position: 15652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16089:1
position: 16089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15652-16089:1:exon

C7K38_RS11230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11230
old locus tag: C7K38_11235
inference: COORDINATES: protein motif:HMM:NF014581.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraG/TraD/VirD4 family protein
translation: MALDEFPRLGYMPAFTDAISTLRSRNVSVMILLQSLAQLDKIYQENGRKVIMDNMHYVVVHNALDNTSQKYFSERAGAKTAVIKSRNRGSGGATSYNPQSVPLIRPEDFATLKQPILYAYNLGVTRVDKAYWFKNNRMKSLVNQG
SIO_010081: C7K38_RS11230
subclass of: SO_0000673
so part of: C7K38_RS11230
location: 15652..16089
location: region:15652-16089:1
so has part: feature:15652-16089:1:exon

WP_265415569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15652-16089:1:exon

C7K38_RS11575
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
gene: mobC
locus tag: C7K38_RS11575
so part of: sequence
location: 17255..17608
location: region:17255-17608:1
so has part: feature:17255-17608:1:exon
subclass of: SO_0000010

position:17255:1
position: 17255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17608:1
position: 17608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17255-17608:1:exon

C7K38_RS11575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
gene: mobC
locus tag: C7K38_RS11575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002449121.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MSEQRNMASQTTNNKPNRKEQKQINFRVSEQEYSKLEQSAETLNISVPAFVKKKAQGARVVAPKIKAEDSQEIARQLAKIGGNLNQLAKHANQGGTVDKQSLQELKNEVAQVWQQLT
SIO_010081: C7K38_RS11575
subclass of: SO_0000673
so part of: C7K38_RS11575
location: 17255..17608
location: region:17255-17608:1
so has part: feature:17255-17608:1:exon

WP_168712014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17255-17608:1:exon

C7K38_RS11240
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11240
old locus tag: C7K38_11245
so part of: sequence
location: 17590..18762
location: region:17590-18762:1
so has part: feature:17590-18762:1:exon
subclass of: SO_0000010

position:17590:1
position: 17590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18762:1
position: 18762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17590-18762:1:exon

C7K38_RS11240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11240
old locus tag: C7K38_11245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003553350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MATTHIKRSNSASRLINYAEKRAVLKDGVNLDVDYAKSELKQVREVYGNTGKTQAYASRIAFSPKEFDPQNETDQQKTLDIAKEVYEKTYPNQQIALYEHIDTDSLHIHAVIGAIDLETGKKMHGDWHEFRDRLVHNTDEIVEQHGLEVTQPDPNRTEKRSMAEIKMTERGQSTWKDQIRHSVDETMGNPLIRDFQAFRDDLKQKAIDVWERGKGLTYQLIGTNYKTRGTKLGTDYEKETIYHELERRQEQYQETNRDTSTPDTARPERNQSNPNRTTELSRNTDSATIDSQNSPRPATETNRTDQSRSQSSLSNDLDQLVAKQREEQQTVGTDLTKRLRPISETDRKSQSEDRRSAEKDKQQPEKQQRNLEKSQQPTRKERERDHGPSR
SIO_010081: C7K38_RS11240
subclass of: SO_0000673
so part of: C7K38_RS11240
location: 17590..18762
location: region:17590-18762:1
so has part: feature:17590-18762:1:exon

WP_103892110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17590-18762:1:exon

C7K38_RS11580
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11580
so part of: sequence
location: 18746..18898
location: region:18746-18898:1
so has part: feature:18746-18898:1:exon
subclass of: SO_0000010

position:18746:1
position: 18746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18898:1
position: 18898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18746-18898:1:exon

C7K38_RS11580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003636748.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQVANRLSGQIDRTRQKMSWYEIKNYLYAVIPTGVISGAIFWLLTYFFA
SIO_010081: C7K38_RS11580
subclass of: SO_0000673
so part of: C7K38_RS11580
location: 18746..18898
location: region:18746-18898:1
so has part: feature:18746-18898:1:exon

WP_174705939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18746-18898:1:exon

C7K38_RS11245
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11245
old locus tag: C7K38_11250
so part of: sequence
location: 19563..20309
location: region:19563-20309:1
so has part: feature:19563-20309:1:exon
subclass of: SO_0000010

position:19563:1
position: 19563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20309:1
position: 20309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19563-20309:1:exon

C7K38_RS11245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11245
old locus tag: C7K38_11250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015060391.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNDVVRYNSGFDTVPLRNFTPVEMDLFWSICSKMKRKGTQEVTFSFETFKELTHYDRREKDKFYTALKTLSEKLGTLTYKFEDEKEFEQLWLFQRFLIRKEEKTVTIQASERFEFILNSIGSNFTRFELENMTQLSSSYVKELYRQLMSHRDIKKRNGAWFIKMDDFRSLLSIPASYRMTDIDNRILNKAKSEFLAKNEYGRQIFKSFKVEKVKARKKNKISSLRIYFEEADNLPHVTLHDWTQEEE
SIO_010081: C7K38_RS11245
subclass of: SO_0000673
so part of: C7K38_RS11245
location: 19563..20309
location: region:19563-20309:1
so has part: feature:19563-20309:1:exon

WP_103892762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19563-20309:1:exon

C7K38_RS11250
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11250
old locus tag: C7K38_11255
so part of: sequence
location: 20315..20893
location: region:20315-20893:1
so has part: feature:20315-20893:1:exon
subclass of: SO_0000010

position:20315:1
position: 20315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20893:1
position: 20893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20315-20893:1:exon

C7K38_RS11250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11250
old locus tag: C7K38_11255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MENGKTIKELAEEFGVSKQAIRKQLTDDFRENYVQTNTANPSNQLVVTVAGYHILKSHFIKGFDRKPSSNQNEKVGGNAGGNLVTTLEQYNSDLKSEIHSKNEQIKSLQEALNYQQQLLDQQQQLNVDDKQLIQSLRQQLALENSETENATTTESTEEQASKDQRINELESQLQQEKENKQLSTKKWWQFWK
SIO_010081: C7K38_RS11250
subclass of: SO_0000673
so part of: C7K38_RS11250
location: 20315..20893
location: region:20315-20893:1
so has part: feature:20315-20893:1:exon

WP_103892763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20315-20893:1:exon

C7K38_RS11255
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11255
old locus tag: C7K38_11260
so part of: sequence
location: complement(21360..22466)
location: region:21360-22466:-1
so has part: feature:21360-22466:-1:exon
subclass of: SO_0000010

position:21360:-1
position: 21360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22466:-1
position: 22466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21360-22466:-1:exon

C7K38_RS11255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11255
old locus tag: C7K38_11260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014125002.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS4-like element ISTeha5 family transposase
translation: MDKYKTISAFNKWFSNINFKKLPFSIREKISQADKYHKKFAFEHFLKVFLYGIDHECESLREMDTAFVSPDLQQTMALDAISHSQLSRELAQMDDEILWAIFVQLLEKARSKTPVTKRNALYLVDSSTFPLNTTRYPWADFRSTKAGIKLHLKLCFMDKEHLYPDQFEVTNAVEHDDNHLEVFVNQPEATYIFDRGYIDYERLDEMEADGYFFVTRVKKNTKIHVRETYDTSQSKNILRDQMVVLGTQVYLTSPFRLVTIQDEKGKQLRFVTNRFDVTAQEVADMYKARWQIELFFKHIKQHMTIKKLFSHSEKGVSNQIILAMIASLLTYLIKVEIGSRKSLFQIKRLLKHLLFQPFEELWVLLVPT
SIO_010081: C7K38_RS11255
subclass of: SO_0000673
so part of: C7K38_RS11255
location: complement(21360..22466)
location: region:21360-22466:-1
so has part: feature:21360-22466:-1:exon

WP_123934490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21360-22466:-1:exon

C7K38_RS11260
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11260
old locus tag: C7K38_11265
so part of: sequence
location: 22628..22879
location: region:22628-22879:1
so has part: feature:22628-22879:1:exon
subclass of: SO_0000010

position:22628:1
position: 22628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22879:1
position: 22879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22628-22879:1:exon

C7K38_RS11260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11260
old locus tag: C7K38_11265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLRQLKQYRTIWHFSVIDYLKGERLFFTKNQQEYFIEEVMFNSKKYPEDIVICWTTDKTSLRLFSLEDIKMTPPKNKKHKKK
SIO_010081: C7K38_RS11260
subclass of: SO_0000673
so part of: C7K38_RS11260
location: 22628..22879
location: region:22628-22879:1
so has part: feature:22628-22879:1:exon

WP_103892599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22628-22879:1:exon

C7K38_RS11265
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11265
old locus tag: C7K38_11270
so part of: sequence
location: 22919..23125
location: region:22919-23125:1
so has part: feature:22919-23125:1:exon
subclass of: SO_0000010

position:22919:1
position: 22919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23125:1
position: 23125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22919-23125:1:exon

C7K38_RS11265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11265
old locus tag: C7K38_11270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLLYEELKKSYPELAEGYINNPANSGRINDLLVMNVKEAKDMNPNDLVLGLEDVFNIVHKVLLQSSP
SIO_010081: C7K38_RS11265
subclass of: SO_0000673
so part of: C7K38_RS11265
location: 22919..23125
location: region:22919-23125:1
so has part: feature:22919-23125:1:exon

WP_103892600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22919-23125:1:exon

C7K38_RS11270
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11270
old locus tag: C7K38_11275
so part of: sequence
location: 23174..23854
location: region:23174-23854:1
so has part: feature:23174-23854:1:exon
subclass of: SO_0000010

position:23174:1
position: 23174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23854:1
position: 23854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23174-23854:1:exon

C7K38_RS11270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11270
old locus tag: C7K38_11275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014125701.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element ISTeha2 family transposase
translation: MNHFKGKQFQKDVIIISVGYYLRYNLSYRDVQEMLYDRGINVSHTTIYRWVQEYGKLIYQIWKKKNRQSFYSWKMDETYIKIKGKWHYLYRAIDSEGMTLDIWLRRKRNTQSAYAFFKRLYKQFGEPKVIVTDKAPSIASAFRKLQKQGLYSETEHRTVKYLNNLIEQDHRPVKRRNKLYQSLRTASTTIKGIEALRGIYKKNRRNGTLFGFSVSTEIKVLMGIPA
SIO_010081: C7K38_RS11270
subclass of: SO_0000673
so part of: C7K38_RS11270
location: 23174..23854
location: region:23174-23854:1
so has part: feature:23174-23854:1:exon

WP_016897246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23174-23854:1:exon

C7K38_RS11275
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11275
old locus tag: C7K38_11280
so part of: sequence
location: complement(23883..24248)
location: region:23883-24248:-1
so has part: feature:23883-24248:-1:exon
subclass of: SO_0000010

position:23883:-1
position: 23883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24248:-1
position: 24248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23883-24248:-1:exon

C7K38_RS11275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11275
old locus tag: C7K38_11280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620826.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MSEREIFEATFAEAKPKRKEPKQISFRVSESEFEKLKRSAEIFQMSVPAFVKSKAQGTKLVTPNVDRAGAIEIAKQLRAIGTNVNQMARFTNTVEVDPATAANLTAELQNIRKGSVAKFQY
SIO_010081: C7K38_RS11275
subclass of: SO_0000673
so part of: C7K38_RS11275
location: complement(23883..24248)
location: region:23883-24248:-1
so has part: feature:23883-24248:-1:exon

WP_103892183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23883-24248:-1:exon

C7K38_RS11280
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11280
old locus tag: C7K38_11285
so part of: sequence
location: complement(24605..25165)
location: region:24605-25165:-1
so has part: feature:24605-25165:-1:exon
subclass of: SO_0000010

position:24605:-1
position: 24605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25165:-1
position: 25165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24605-25165:-1:exon

C7K38_RS11280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11280
old locus tag: C7K38_11285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010739382.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR family transcriptional regulator
translation: MQQLDLRVQKTHKALIEAFENLLHEKEFENISVTEICDAAMVRRPTFYNHFLDKYDFITFFIKHKMNEIFDFAIKNSNEEKDNFFIIVFEQLLDQFDNLLYLIFSIQMNANIIFELESVREYGKSMLGNRIKKGASDEELPIELSYKGQIIMGITIQSVFWYKEKRNQISREEIIELYTQTLEKFS
SIO_010081: C7K38_RS11280
subclass of: SO_0000673
so part of: C7K38_RS11280
location: complement(24605..25165)
location: region:24605-25165:-1
so has part: feature:24605-25165:-1:exon

WP_103892184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24605-25165:-1:exon

C7K38_RS11285
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11285
old locus tag: C7K38_11290
so part of: sequence
location: 25350..26288
location: region:25350-26288:1
so has part: feature:25350-26288:1:exon
subclass of: SO_0000010

position:25350:1
position: 25350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26288:1
position: 26288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25350-26288:1:exon

C7K38_RS11285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11285
old locus tag: C7K38_11290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010739381.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSVIEVKHVTKDYGHGRGIFDVSFEINEGEAFGFLGPNGAGKSTAIRHLMGFSKADEGELSINGKDSWKSAANIKQDVGYLPGELAFPKGMTGDQFIEFMASERKITDMTRTEQLKELFKVDTSKEIKEMSLGTKRKLAVVTAFMHNPKILILDEPTSGLDPVMQERFIQFILKEKSEGKTILLSSHIFTEVDATCDRIAIIKNGVVVSTVESNELKQSTNKSFKIEFASFEDYQKFIENTEFTIPTKRPEQNQVKLSLTDQKMQEFFTELSEVKVNFISEIKFTLEDYFMDFYDRKKTVAAGEENLRYGLH
SIO_010081: C7K38_RS11285
subclass of: SO_0000673
so part of: C7K38_RS11285
location: 25350..26288
location: region:25350-26288:1
so has part: feature:25350-26288:1:exon

WP_103892185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25350-26288:1:exon

C7K38_RS11290
type: Gene
subclass of: SO_0000704
RO_0002162: 526944
locus tag: C7K38_RS11290
old locus tag: C7K38_11295
so part of: sequence
location: 26275..27168
location: region:26275-27168:1
so has part: feature:26275-27168:1:exon
subclass of: SO_0000010

position:26275:1
position: 26275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27168:1
position: 27168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26275-27168:1:exon

C7K38_RS11290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 526944
locus tag: C7K38_RS11290
old locus tag: C7K38_11295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010739380.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MAYIDIKHLTKDYGNGHGIFDVSLEIEKGENYGFVGINGAGKTTTIRHLMGFLKPDEGSVTINGLDATKSSAEVKRYVSYIPGEINFPGNKTGEDFLKDQIYLSGRGSWERAKELSNLLQLDVTANVRSMSKGMKQKTAIVSAFASNADILIMDEPSTGLDPLMRDIFLDLLKQEKKQGKTILMSSNIFQEVEEVSDRAAVIREGKIIDITDMADIRYNENKSYRMEFKSLADFERFLNLGYQSTMVKAEDLQVFVQIHDKNINYLIQDLKDFDLVYFKEIKFSFEDYITEIFKEGV
SIO_010081: C7K38_RS11290
subclass of: SO_0000673
so part of: C7K38_RS11290
location: 26275..27168
location: region:26275-27168:1
so has part: feature:26275-27168:1:exon

WP_123936737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26275-27168:1:exon