Tetragenococcus osmophilus strain JCM 31126 plasmid pTO1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Tetragenococcus.
Characterization of Tetragenococcus strains from sugar thick juice reveals a novel species, Tetragenococcus osmophilus sp. nov., and divides Tetragenococcus halophilus into two subspecies, T. halophilus subsp. halophilus subsp. nov. and T. halophilus subsp. flandriensis subsp. nov
Int J Syst Evol Microbiol 62 (Pt 1), 129-137 (2012)
Submitted (15-MAR-2018) Life Science, Chung-Ang University, 84, Heukseok-Ro, Dongjak-Gu, Seoul 156-756, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP027784.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP3 v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 366.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 12:55:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,297\nCDSs (total) :: 2,217\nGenes (coding) :: 2,157\nCDSs (with protein) :: 2,157\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 16 of 60\nPseudo Genes (incomplete) :: 34 of 60\nPseudo Genes (internal stop) :: 18 of 60\nPseudo Genes (multiple problems) :: 8 of 60\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Tetragenococcus osmophilus
COORDINATES: similar to AA sequence:RefSeq:WP_004271063.1
GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003706982.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_012477736.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element ISS1N family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011476586.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003703264.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014125702.1
COORDINATES: similar to AA sequence:RefSeq:WP_003106687.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013711893.1
iron-sulfur cluster repair di-iron protein, ric
COORDINATES: similar to AA sequence:RefSeq:WP_016897248.1
COORDINATES: similar to AA sequence:RefSeq:WP_016853407.1
glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003141178.1
COORDINATES: similar to AA sequence:RefSeq:WP_002478556.1
catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016897252.1
COORDINATES: similar to AA sequence:RefSeq:WP_005876259.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002351084.1
COORDINATES: protein motif:HMM:NF018169.2
COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
IS6-like element IS1216 family transposase
COORDINATES: protein motif:HMM:NF014581.2
COORDINATES: similar to AA sequence:RefSeq:WP_002449121.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_003553350.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003636748.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060391.1
COORDINATES: similar to AA sequence:RefSeq:WP_014125002.1
IS4-like element ISTeha5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014125701.1
IS6-like element ISTeha2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010620826.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_010739382.1
COORDINATES: similar to AA sequence:RefSeq:WP_010739381.1
COORDINATES: similar to AA sequence:RefSeq:WP_010739380.1
ATP-binding cassette domain-containing protein