Allomeiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence.
Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Allomeiothermus.
Complete genome sequence of Meiothermus silvanus type strain (VI-R2)
The complete plasmid2 of Meiothermus silvanus DSM 9946
Submitted (18-MAY-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002044.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4083272\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Meiothermus silvanus VI-R2, DSM 9946\nCulture Collection ID :: DSM 9946, ATCC 700542\nGOLD Stamp ID :: Gi02308\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: GeneMark\nIsolation Site :: Hot spring from Portugal\nIsolation Country :: Portugal\nOxygen Requirement :: Aerobe\nCell Shape :: Rod-shaped\nMotility :: Nonmotile\nTemperature Range :: Thermophile\nTemperature Optimum :: 50C\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Hot spring\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 13:49:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,757\nCDSs (total) :: 3,701\nGenes (coding) :: 3,621\nCDSs (with protein) :: 3,621\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 25 of 80\nPseudo Genes (incomplete) :: 60 of 80\nPseudo Genes (internal stop) :: 4 of 80\nPseudo Genes (multiple problems) :: 8 of 80\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF021190.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014632254.1
COORDINATES: similar to AA sequence:RefSeq:WP_013157080.1
COORDINATES: similar to AA sequence:RefSeq:WP_013157601.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF013826.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013012868.1
COORDINATES: similar to AA sequence:RefSeq:WP_013157083.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013012858.1
COORDINATES: similar to AA sequence:RefSeq:WP_013012860.1
COORDINATES: similar to AA sequence:RefSeq:WP_018465399.1
COORDINATES: protein motif:HMM:NF019826.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013159763.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013159487.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_013012821.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013012791.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF021503.2
DUF2227 family putative metal-binding protein
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: similar to AA sequence:RefSeq:WP_018130481.1
COORDINATES: similar to AA sequence:RefSeq:WP_014003863.1
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_013014466.1
GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF016253.2
GO:0043683 - type IV pilus assembly [Evidence IEA]; GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF012485.2
secretin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010543191.1
COORDINATES: protein motif:HMM:NF017663.2
GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
RusA family crossover junction endodeoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_014629226.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02532.1
COORDINATES: similar to AA sequence:RefSeq:WP_018467056.1
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF027566.2
COORDINATES: protein motif:HMM:NF014640.2
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013458534.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF040318.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158883.1
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF014787.2
COORDINATES: protein motif:HMM:NF018798.2
COORDINATES: similar to AA sequence:RefSeq:WP_013159801.1
COORDINATES: protein motif:HMM:NF037510.2
COORDINATES: similar to AA sequence:RefSeq:WP_015065499.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065498.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065497.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013615851.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: protein motif:HMM:NF012613.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_013012835.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013012857.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013159714.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229174.1