Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
Evaluation of a new synthetic long read technology
Submitted (17-MAY-2019) Ithree institute, University of Technology Sydney, PO Box 123, Ultimo, NSW 2007, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP040501.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2019\nAssembly Method :: Morphoseq v. 1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 30x\nSequencing Technology :: Morphoseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 00:10:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,003\nCDSs (total) :: 1,928\nGenes (coding) :: 1,885\nCDSs (with protein) :: 1,885\nGenes (RNA) :: 75\nrRNAs :: 4, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 43\nCDSs (without protein) :: 43\nPseudo Genes (ambiguous residues) :: 0 of 43\nPseudo Genes (frameshifted) :: 27 of 43\nPseudo Genes (incomplete) :: 14 of 43\nPseudo Genes (internal stop) :: 12 of 43\nPseudo Genes (multiple problems) :: 10 of 43\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003590748.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003625624.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603791.1
COORDINATES: similar to AA sequence:RefSeq:WP_002346505.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR03892.1
thiocillin/thiostrepton family thiazolyl peptide
COORDINATES: protein motif:HMM:NF014661.2
COORDINATES: protein motif:HMM:NF016615.2
COORDINATES: protein motif:HMM:NF025394.2
lantibiotic dehydratase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: similar to AA sequence:RefSeq:WP_009166832.1
TipAS antibiotic-recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009166831.1
COORDINATES: similar to AA sequence:RefSeq:WP_014563640.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013851198.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012846842.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003649862.1
COORDINATES: similar to AA sequence:RefSeq:WP_003653264.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011679017.1
Rgg/GadR/MutR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004896688.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896686.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896685.1
COORDINATES: similar to AA sequence:RefSeq:WP_003649298.1
COORDINATES: similar to AA sequence:RefSeq:WP_020807708.1
COORDINATES: similar to AA sequence:RefSeq:WP_003649869.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008470492.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_020807713.1
COORDINATES: similar to AA sequence:RefSeq:WP_003649872.1
COORDINATES: similar to AA sequence:RefSeq:WP_016497312.1
COORDINATES: similar to AA sequence:RefSeq:WP_003672432.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076612049.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014919513.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_003627927.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_013855195.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
COORDINATES: similar to AA sequence:RefSeq:WP_003649837.1
COORDINATES: similar to AA sequence:RefSeq:WP_003649838.1