Saccharolobus shibatae B12 plasmid pB12E5, complete sequence.
Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus.
New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae
Submitted (17-JUN-2021) Archaeal Virology, Institute Pasteur, 25 rue du docteur Roux, Paris 75015, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP077716.1.\nBacteria and source DNA available from Institute Pasteur, Archaeal\nvirology group.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 40.0x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 04:07:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,157\nCDSs (total) :: 3,106\nGenes (coding) :: 2,983\nCDSs (with protein) :: 2,983\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 123\nCDSs (without protein) :: 123\nPseudo Genes (ambiguous residues) :: 0 of 123\nPseudo Genes (frameshifted) :: 75 of 123\nPseudo Genes (incomplete) :: 80 of 123\nPseudo Genes (internal stop) :: 31 of 123\nPseudo Genes (multiple problems) :: 52 of 123\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010978269.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: similar to AA sequence:RefSeq:WP_012953430.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718830.1
GO:0090529 - cell septum assembly [Evidence IEA]; GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012718831.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718833.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012718277.1
COORDINATES: similar to AA sequence:RefSeq:WP_012711814.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735984.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735985.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012735986.1
COORDINATES: similar to AA sequence:RefSeq:WP_016731953.1
COORDINATES: protein motif:HMM:NF014080.2
winged helix-turn-helix domain-containing protein
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016023820.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: similar to AA sequence:RefSeq:WP_012718268.1
COORDINATES: similar to AA sequence:RefSeq:WP_012714072.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718707.1
COORDINATES: similar to AA sequence:RefSeq:WP_010979350.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012736011.1
COORDINATES: similar to AA sequence:RefSeq:WP_009071215.1
cytotoxic translational repressor of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_009992233.1
COORDINATES: similar to AA sequence:RefSeq:WP_009071217.1
COORDINATES: similar to AA sequence:RefSeq:WP_012714082.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011921280.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010979917.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009075696.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718271.1