Haloferax mediterranei ATCC 33500 plasmid pHME132, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.
Methylomes of Two Extremely Halophilic Archaea Species, Haloarcula marismortui and Haloferax mediterranei
Microbiol Resour Announc 8 (27), e00577-19 (2019)
Submitted (07-APR-2019) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP039142.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. April-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 475.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 02:18:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,937\nCDSs (total) :: 3,872\nGenes (coding) :: 3,802\nCDSs (with protein) :: 3,802\nGenes (RNA) :: 65\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 2\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 37 of 70\nPseudo Genes (incomplete) :: 48 of 70\nPseudo Genes (internal stop) :: 22 of 70\nPseudo Genes (multiple problems) :: 28 of 70\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012941322.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004061493.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004971387.1
SWIM zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048599.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488186.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006065507.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060588.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006828030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004043162.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
sugar-specific transcriptional regulator TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_004060584.1
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060582.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004968193.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060577.1
COORDINATES: protein motif:HMM:NF024753.2
COORDINATES: similar to AA sequence:RefSeq:WP_004595756.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611240.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011223694.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004060569.1
COORDINATES: similar to AA sequence:RefSeq:WP_006168512.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040813.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276452.1
COORDINATES: similar to AA sequence:RefSeq:WP_008365980.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595175.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060563.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060562.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649717.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060559.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060558.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060557.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060554.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060552.1
COORDINATES: similar to AA sequence:RefSeq:WP_006110281.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060546.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054559.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006054558.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060539.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060537.1
GO:0046983 - protein dimerization activity [Evidence IEA]
alkyl sulfatase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060536.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054554.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004060530.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060529.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060528.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060527.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863212.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004063170.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060523.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060522.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276463.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008579076.1
COORDINATES: similar to AA sequence:RefSeq:WP_008573149.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004968525.1
COORDINATES: similar to AA sequence:RefSeq:WP_008096975.1
COORDINATES: similar to AA sequence:RefSeq:WP_008609280.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041077.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600003.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041079.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008573139.1
COORDINATES: similar to AA sequence:RefSeq:WP_008096994.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041082.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004060506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060505.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060504.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_004060502.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060501.1
L-2-amino-thiazoline-4-carboxylic acid hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_004060500.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060499.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060497.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060496.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060495.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060494.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060493.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007140167.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004056203.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060491.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060490.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008319284.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060487.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060486.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060484.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060483.1
COORDINATES: protein motif:HMM:NF025779.2
COORDINATES: similar to AA sequence:RefSeq:WP_004060479.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488258.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186969.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060471.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060470.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060468.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060466.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367660.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186970.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060460.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060458.1
COORDINATES: similar to AA sequence:RefSeq:WP_009376993.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060450.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060449.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060448.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060446.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600170.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1
COORDINATES: similar to AA sequence:RefSeq:WP_009733116.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060439.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006066879.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600164.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060435.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385895.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599624.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762025.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532717.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060597.1