Haloferax mediterranei ATCC 33500 plasmid pHME505, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.
Methylomes of Two Extremely Halophilic Archaea Species, Haloarcula marismortui and Haloferax mediterranei
Microbiol Resour Announc 8 (27), e00577-19 (2019)
Submitted (07-APR-2019) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP039140.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. April-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 475.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 02:18:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,937\nCDSs (total) :: 3,872\nGenes (coding) :: 3,802\nCDSs (with protein) :: 3,802\nGenes (RNA) :: 65\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 2\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 37 of 70\nPseudo Genes (incomplete) :: 48 of 70\nPseudo Genes (internal stop) :: 22 of 70\nPseudo Genes (multiple problems) :: 28 of 70\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004061031.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004061032.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060582.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_004061033.1
COORDINATES: protein motif:HMM:NF017959.2
COORDINATES: similar to AA sequence:RefSeq:WP_004061035.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006053354.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061037.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061038.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008572738.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007543041.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004061042.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061044.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060497.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061046.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061047.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061048.1
COORDINATES: similar to AA sequence:RefSeq:WP_013440733.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061050.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061051.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572589.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004061054.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061055.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061056.1
BtrH N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004061057.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061058.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061059.1
COORDINATES: similar to AA sequence:RefSeq:WP_008424550.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_004061061.1
PPOX class F420-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004061062.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006053461.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061064.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061065.1
COORDINATES: similar to AA sequence:RefSeq:WP_007542039.1
COORDINATES: similar to AA sequence:RefSeq:WP_007273253.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971609.1
stress response translation initiation inhibitor YciH
COORDINATES: similar to AA sequence:RefSeq:WP_008894107.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666214.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061071.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061072.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008319279.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061074.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004061075.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013440777.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319278.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_005044565.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004594319.1
COORDINATES: similar to AA sequence:RefSeq:WP_014732728.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006077199.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054587.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185853.1
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004593978.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061086.1
COORDINATES: similar to AA sequence:RefSeq:WP_006056074.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061089.1
COORDINATES: similar to AA sequence:RefSeq:WP_018129140.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006055215.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060601.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060602.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060603.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012941304.1
GO:0036424 - L-phosphoserine phosphatase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060606.1
Zn-ribbon domain-containing OB-fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060607.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060608.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060609.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_004060610.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060611.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060612.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060613.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060614.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650629.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060617.1
COORDINATES: similar to AA sequence:RefSeq:WP_005534375.1
COORDINATES: similar to AA sequence:RefSeq:WP_008309160.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060620.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183554.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006053466.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060623.1
COORDINATES: similar to AA sequence:RefSeq:WP_013446641.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007540549.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060626.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060628.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060631.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060641.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060643.1
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain
COORDINATES: similar to AA sequence:RefSeq:WP_006667589.1
COORDINATES: similar to AA sequence:RefSeq:WP_008096903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004060648.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319248.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319244.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595756.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008319238.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041912.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004060656.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060657.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009486824.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060659.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060660.1
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_004060662.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060663.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060664.1
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060665.1
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060667.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060668.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060669.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060670.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054696.1
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: similar to AA sequence:RefSeq:WP_004060675.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060676.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060677.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571484.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060682.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060685.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060686.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054689.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060688.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060689.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060690.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054693.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054694.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054695.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060694.1
pantetheine-phosphate adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004060695.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060696.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF024583.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060698.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060699.1
COORDINATES: similar to AA sequence:RefSeq:WP_006053869.1
NADPH:quinone oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060701.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060702.1
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060703.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060704.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060705.1
COORDINATES: similar to AA sequence:RefSeq:WP_008091228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007275555.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008317999.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060708.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060709.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060710.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060711.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008318010.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035130.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060714.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064480.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004978398.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: similar to AA sequence:RefSeq:WP_006600941.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064475.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: similar to AA sequence:RefSeq:WP_004060719.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060720.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572102.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004060722.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060723.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064645.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967871.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060726.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060727.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060729.1
COORDINATES: similar to AA sequence:RefSeq:WP_004062142.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408823.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060740.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040855.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040856.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008318037.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600954.1
GO:0097266 - phenylacetyl-CoA 1,2-epoxidase activity [Evidence IEA]
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
1,2-phenylacetyl-CoA epoxidase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_004040859.1
phenylacetic acid degradation protein PaaB
COORDINATES: similar to AA sequence:RefSeq:WP_004060752.1
phenylacetate-CoA oxygenase subunit PaaC
COORDINATES: similar to AA sequence:RefSeq:WP_004040861.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318047.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040864.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060762.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064425.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318054.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572150.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064418.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060767.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004060768.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040870.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324718.1
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008606544.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572167.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060773.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060774.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600962.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060776.1
COORDINATES: similar to AA sequence:RefSeq:WP_008093926.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060778.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060779.1
COORDINATES: similar to AA sequence:RefSeq:WP_008093937.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060781.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008011233.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060783.1
COORDINATES: similar to AA sequence:RefSeq:WP_004057507.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572217.1
COORDINATES: similar to AA sequence:RefSeq:WP_004978237.1
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004040914.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060788.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060789.1
IS4-like element ISHme2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012289077.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011324024.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224772.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060793.1
IS6-like element ISHme1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008318130.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024753.2
COORDINATES: similar to AA sequence:RefSeq:WP_004060795.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060796.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060797.1
GO:0050415 - formimidoylglutamase activity [Evidence IEA]
GO:0019556 - histidine catabolic process to glutamate and formamide [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060798.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060799.1
COORDINATES: similar to AA sequence:RefSeq:WP_014039217.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516431.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572242.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060803.1
COORDINATES: similar to AA sequence:RefSeq:WP_008386622.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648201.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008324573.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: similar to AA sequence:RefSeq:WP_006187151.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060809.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064674.1
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas5b
COORDINATES: similar to AA sequence:RefSeq:WP_004060811.1
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: similar to AA sequence:RefSeq:WP_004060812.1
type I-B CRISPR-associated protein Cas8b/Csh1
COORDINATES: similar to AA sequence:RefSeq:WP_008524857.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035138.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060815.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004978164.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541110.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572291.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060819.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572294.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006601003.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_008611199.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572297.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094042.1
COORDINATES: similar to AA sequence:RefSeq:WP_004978148.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064785.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276254.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_004060828.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004040960.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060831.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060832.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060834.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060835.1
COORDINATES: similar to AA sequence:RefSeq:WP_004266931.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094057.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317728.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060838.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060839.1
metal ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060840.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060841.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064761.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060843.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060844.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060845.1
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008572393.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060847.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094085.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064730.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060850.1
COORDINATES: similar to AA sequence:RefSeq:WP_008605424.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317762.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060853.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060854.1
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060855.1
COORDINATES: similar to AA sequence:RefSeq:WP_015300564.1
type II/IV secretion system ATPase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004060857.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385958.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008385956.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060859.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385951.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060861.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060863.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040989.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324907.1
COORDINATES: similar to AA sequence:RefSeq:WP_006112429.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007189002.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006184177.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004060870.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317774.1
COORDINATES: similar to AA sequence:RefSeq:WP_017344623.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040992.1
COORDINATES: similar to AA sequence:RefSeq:WP_004978071.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967768.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_004043148.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094112.1
GO:0008254 - 3'-nucleotidase activity [Evidence IEA]; GO:0008253 - 5'-nucleotidase activity [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060884.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060885.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967759.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060887.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060889.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008094123.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_004060892.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008572433.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060896.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008094127.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043136.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043135.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060904.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060905.1
outer membrane lipoprotein carrier protein LolA
COORDINATES: similar to AA sequence:RefSeq:WP_004041341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060907.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060908.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004043122.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043121.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572467.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317836.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060913.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060915.1
COORDINATES: similar to AA sequence:RefSeq:WP_004978003.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060917.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060918.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060919.1
COORDINATES: similar to AA sequence:RefSeq:WP_004978002.1
COORDINATES: similar to AA sequence:RefSeq:WP_004978001.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572480.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572194.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064384.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600970.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060926.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060927.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060928.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060929.1
COORDINATES: similar to AA sequence:RefSeq:WP_004062043.1
COORDINATES: similar to AA sequence:RefSeq:WP_007542293.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_004517397.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600140.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008321913.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532984.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060936.1
COORDINATES: similar to AA sequence:RefSeq:WP_008605943.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060938.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004060939.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060940.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_004060941.1
GO:0008671 - 2-dehydro-3-deoxygalactonokinase activity [Evidence IEA]; GO:0008673 - 2-dehydro-3-deoxygluconokinase activity [Evidence IEA]
bifunctional 2-dehydro-3-deoxygluconokinase/2-dehydro-3- deoxygalactonokinase
COORDINATES: similar to AA sequence:RefSeq:WP_004060942.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060944.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004060945.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222528.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060948.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260493.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317900.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060952.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060953.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008317903.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060955.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008317918.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055546.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825730.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004214279.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322476.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060962.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008572522.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060964.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317945.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317947.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276389.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317951.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060970.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060971.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977921.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060973.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007542154.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060976.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060977.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977901.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060979.1
COORDINATES: similar to AA sequence:RefSeq:WP_008321969.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060981.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977892.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060983.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060984.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094277.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977883.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094280.1
COORDINATES: similar to AA sequence:RefSeq:WP_007542182.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060990.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094283.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060992.1
COORDINATES: similar to AA sequence:RefSeq:WP_006664185.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977870.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060996.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977868.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060998.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004060999.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_004061000.1
glycoside hydrolase family 97 catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004061004.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061005.1
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_004061008.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971357.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061011.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061012.1
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: similar to AA sequence:RefSeq:WP_006601087.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541392.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061018.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061019.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061020.1
COORDINATES: similar to AA sequence:RefSeq:WP_014041214.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014041215.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008322234.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061025.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061026.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061027.1
COORDINATES: similar to AA sequence:RefSeq:WP_008327218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007542347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061030.1