Euhalothece natronophila Z-M001 plasmid pEu4, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Halothece cluster; Euhalothece.
Carotenoids and Carotenoid Binding Proteins in the Halophilic Cyanobacterium Euhalothece sp. ZM00
Submitted (01-AUG-2019) Biological Sciences, Chungnam National Univ., 99 Daehagro, Yoseong, Dajeon 34134, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP042330.1.\nBacteria and source DNA available from Youn-Il Park.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-JUN-2019\nAssembly Method :: HGAP v. PacBio de novo assembly pipeline\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1357.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 04:27:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,515\nCDSs (total) :: 3,461\nGenes (coding) :: 3,377\nCDSs (with protein) :: 3,377\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 45 of 84\nPseudo Genes (incomplete) :: 48 of 84\nPseudo Genes (internal stop) :: 13 of 84\nPseudo Genes (multiple problems) :: 19 of 84\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Euhalothece natronophila
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013938.2
GO:0005515 - protein binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025438.2
COORDINATES: protein motif:HMM:NF022021.2
COORDINATES: similar to AA sequence:RefSeq:WP_012599378.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008187086.1
COORDINATES: similar to AA sequence:RefSeq:WP_008277561.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741110.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_007307656.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.