Euhalothece natronophila Z-M001 plasmid pEu3, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Halothece cluster; Euhalothece.
Carotenoids and Carotenoid Binding Proteins in the Halophilic Cyanobacterium Euhalothece sp. ZM00
Submitted (01-AUG-2019) Biological Sciences, Chungnam National Univ., 99 Daehagro, Yoseong, Dajeon 34134, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP042329.1.\nBacteria and source DNA available from Youn-Il Park.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-JUN-2019\nAssembly Method :: HGAP v. PacBio de novo assembly pipeline\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1357.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 04:27:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,515\nCDSs (total) :: 3,461\nGenes (coding) :: 3,377\nCDSs (with protein) :: 3,377\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 45 of 84\nPseudo Genes (incomplete) :: 48 of 84\nPseudo Genes (internal stop) :: 13 of 84\nPseudo Genes (multiple problems) :: 19 of 84\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Euhalothece natronophila
COORDINATES: similar to AA sequence:RefSeq:WP_019504701.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006617997.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_045870379.1
GO:0009538 - photosystem I reaction center [Evidence IEA]; GO:0009539 - photosystem II reaction center [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015211551.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013540.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012797079.1
COORDINATES: similar to AA sequence:RefSeq:WP_015224368.1
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: similar to AA sequence:RefSeq:WP_015328684.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004267893.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217051.1
COORDINATES: similar to AA sequence:RefSeq:WP_015225512.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497049.1
COORDINATES: similar to AA sequence:RefSeq:WP_015175346.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015206864.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002776211.1
COORDINATES: similar to AA sequence:RefSeq:WP_015224700.1
COORDINATES: similar to AA sequence:RefSeq:WP_015224699.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017747477.1
COORDINATES: similar to AA sequence:RefSeq:WP_017291798.1
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: similar to AA sequence:RefSeq:WP_019504690.1
COORDINATES: similar to AA sequence:RefSeq:WP_010997721.1
COORDINATES: similar to AA sequence:RefSeq:WP_005005188.1
COORDINATES: similar to AA sequence:RefSeq:WP_017289321.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.