Caldicellulosiruptor bescii DSM 6725 plasmid pATHE02, complete sequence.
Bacteria; Bacillota; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.
Complete sequence of plasmid2 of Caldicelulosiruptor becscii DSM 6725
Submitted (26-JAN-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001395.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4084710\nSource DNA available from Michael Adams (adams@bmb.uga.edu)\nBacteria available from DSMZ: DSM 6725\nContacts: Michael Adams (adams@bmb.uga.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nMeta information:\n Organism display name: Caldicelulosiruptor becscii Z-1320, DSM\n6725\n Culture Collection IDs: DSM 6725\n GOLD ID: Gi03121 http://genomesonline.org/GOLD_CARDS/Gi03121.html\n Sequencing Platforms: Sanger, 454\n Phenotypes: Thermoacidophile, Cellulose degrader\n Diseases: None\n Habitat: Fresh water, Hot spring\n Oxygen Requirement: Anaerobe\n Temperature Range: Thermophile\n Biotic Relationship: Free living\n Isolation: Hot spring on the Kamchatka peninsula in Russia.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/29/2022 00:48:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,838\nCDSs (total) :: 2,777\nGenes (coding) :: 2,667\nCDSs (with protein) :: 2,667\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 110\nCDSs (without protein) :: 110\nPseudo Genes (ambiguous residues) :: 0 of 110\nPseudo Genes (frameshifted) :: 66 of 110\nPseudo Genes (incomplete) :: 56 of 110\nPseudo Genes (internal stop) :: 39 of 110\nPseudo Genes (multiple problems) :: 46 of 110\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Caldicellulosiruptor bescii
type strain of Caldicelulosiruptor becscii DSM 6725
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017542.2
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.