Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03, complete sequence.
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Bacteria; Bacillota; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.
Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA)
The complete plasmid3 of Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Submitted (03-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001730.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4083332\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Alicyclobacillus acidocaldarius\n acidocaldarius 104-IA, DSM 446\nCulture Collection ID :: DSM 446, ATCC 27009\nGOLD Stamp ID :: Gi02324\nFunding Program :: DOE-GEBA 2007\nGene Calling Method :: GeneMark\nIsolation Site :: \"Yellowstone National Park, acid hot\n spring\"\nIsolation Country :: USA\nLatitude :: 44.376262\nLongitude :: -110.690383\nOxygen Requirement :: Aerobe\nCell Shape :: Rod-shaped\nSporulation :: Sporulating\nTemperature Range :: Thermophile\nTemperature Optimum :: 60C\npH :: 3 - 4\nGram Staining :: gram+\nBiotic Relationship :: Free living\nDiseases :: None\nPhenotypes :: Thermoacidophile\nEnergy Source :: Chemoorganotroph\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 01:38:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,188\nCDSs (total) :: 3,104\nGenes (coding) :: 3,066\nCDSs (with protein) :: 3,066\nGenes (RNA) :: 84\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 4\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 11 of 38\nPseudo Genes (incomplete) :: 28 of 38\nPseudo Genes (internal stop) :: 7 of 38\nPseudo Genes (multiple problems) :: 8 of 38\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Alicyclobacillus acidocaldarius
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008340986.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012810457.1
COORDINATES: similar to AA sequence:RefSeq:WP_008340983.1
COORDINATES: similar to AA sequence:RefSeq:WP_008340980.1
COORDINATES: similar to AA sequence:RefSeq:WP_008340979.1