Borreliella bissettiae DN127 plasmid lp25, complete sequence.
type: Entry
definition: Borreliella bissettiae DN127 plasmid lp25, complete sequence.
sequence version: NC_015922.1
sequence date: 2022-12-07
sequence: sequence
division: CON
label: NC_015922.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604204
keyword: RefSeq
source: Borreliella bissettiae DN127
organism: Borreliella bissettiae DN127
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002757.1.\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:43:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,449\nCDSs (total) :: 1,409\nGenes (coding) :: 1,335\nCDSs (with protein) :: 1,335\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 44 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 30 of 74\nPseudo Genes (multiple problems) :: 23 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23029
topology: linear
so has quality: SO_0000987
location: 1..23029
location: region:1-23029:1
RO_0002162: 521010

NC_015922
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604204
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Mongodin, E.F.
author: Casjens, S.R.
author: Fraser-Liggett, C.M.
author: Qiu, W.-G.
author: Dunn, J.J.
author: Luft, B.J.
author: Schutzer, S.E.
journal: Submitted (27-JUN-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23029:1
position: 23029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23029:1:source
so part of: sequence
organism: Borreliella bissettiae DN127
mol type: genomic DNA
strain: DN127
host: Ixodes pacificus (western blackleg tick)
type material: type strain of Borrelia bissettiae
plasmid: lp25
country: USA: California

521010
type: Taxonomy
SIO_000068: taxonomy

BBIDN127_RS07750
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07750
old locus tag: BbiDN127_E0002
so part of: sequence
location: complement(419..4240)
location: region:419-4240:-1
so has part: feature:419-4240:-1:exon
subclass of: SO_0000010

position:419:-1
position: 419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4240:-1
position: 4240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:419-4240:-1:exon

BBIDN127_RS07750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07750
old locus tag: BbiDN127_E0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703862.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
translation: MKTNDIVKTNNPNVSLYKQLSKDFIKRENTNKLKDLFILIKNKLSSIDDNSTEANIESLLKSIFEELNYSVEQQKAGQIEGVESRIDILLFENDKDKVAFNNKVKEAKKNNEPIPVENILLIAEIKRPAFGFNTKDKVKEAEDQLYRYLNQYQKHYGILSNGKVWRLYDKSKVLYGEKRYIEFDFSKIAEKEEYEEQEWFVLFIYLIRKERYLKTSNVIEVEKEQIAKEKEIIQKTLREILYEKPDNSIVFKIAKNIYDKEFKVSDKEITKLDLDKILEESIIFILRIFFIAYIEDNDIFKKILEENKLYRSSISFRYFFYDENTKKKLGYKKIITIFNLLDKGSDAIKFPIFNGGLFAEDKVKYLNNESLLSISELEEILVKILFFEEKNIKNEKFVEYSKLDPKSFGELYETLLEYDLRIADTTVHRILEEGGTAYLIRTEEELENEKVNKVATYYKGNIYLTSRSLDRKKSGAYYTPDDLTDFMVTSSIEEQLKTKSPLDIKIIDNSCGSGHFLISCLDYLTEKVWYQLDKFEDVKKELDKEYRTILKESEEYDVQDSISKELVLKRMLLKKCIYGVDINPISIEITMLSLWINTFIFGTPLSFIEHHIKVGNALLGYTKDEFFDITKKKFESGFSLFKKRIKEITTILEDIYQKIKGINDTTKEDIEKSKKIYKEYEESEDIDNLKIIFSLIKLYSLSFDKSLNIEFSDITFVISLIENILGNKISSEDKEKIEKIKKLSSYYKFFHYGIEFPDIQEGFDIVIGNPPWERTKFNEAEFFSKHIPGYRKLSIKEQNKIKQEILSKDNHPLNIEYNEEKNSISAINNIYKFDFKDFTSGGDSNLFRYFVAFNLKLIKRKGNLTYLVPSSFWSEFSSKTLRKHIFANYKLNYIYQFENKKRFKDVHSSFKFAIFQLSNTKIPTSSFKAKFMIQNNDNILKEITKDLKDGKYDPYKGIELNIGQIKKLSPIQESIIEFKDSKEFGLINKIFSQFSTLSEEYIDFKQGLNLTIYKAFYKEYNNENFIFLYSGSNIHQFNSRFFEDKDAKESSKLLWIDKKNLEKALTKDNHFQAERVFYRGIARNTDERTMISTLCPRNCYCVNSIYVNYEKIPISIYKKLFIVSIFNTFVFDFMIRRFVNSNVLKPCLYQCSMPQPEEKEILSNSLYLNLVKNTSLMIAKNDSENFKYLLYLEHFELSKEKVNKILKLDKEDEFFKEKENENNFIVASLYSLTKEDFIILLSDFKALKNKKGEDYISSLIKGYENYLLNNKIF
SIO_010081: BBIDN127_RS07750
subclass of: SO_0000673
so part of: BBIDN127_RS07750
location: complement(419..4240)
location: region:419-4240:-1
so has part: feature:419-4240:-1:exon

WP_014024052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:419-4240:-1:exon

BBIDN127_RS06255
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06255
old locus tag: BbiDN127_E0003
so part of: sequence
location: 4787..5617
location: region:4787-5617:1
so has part: feature:4787-5617:1:exon
subclass of: SO_0000010

position:4787:1
position: 4787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5617:1
position: 5617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4787-5617:1:exon

BBIDN127_RS06255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06255
old locus tag: BbiDN127_E0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKNPKLNKSKLNIITAILTSICISCAPFGNINPKKLKNTTASNNLKKTTRSNNSRNLKKTNSHTNSENSAKNNQNFENESQNSKSSNQNSQEQTTTSKLEKIGKDLETQEKQDNIQIAKIDTKYDFLETFKLKNGDYFMHNAKMHLKKIIYSSLNYEKEKILTLKEILEKLDKNSANRTIAGKFLETSKYIQLKIEGRHLNKIQDILQTLSKEKAKELLQHTEQDLKIKQNFVKALNATIEAYNKNSGNIKTDNAALANHIKEKYSHPLYLLNQAD
SIO_010081: BBIDN127_RS06255
subclass of: SO_0000673
so part of: BBIDN127_RS06255
location: 4787..5617
location: region:4787-5617:1
so has part: feature:4787-5617:1:exon

WP_014024053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4787-5617:1:exon

BBIDN127_RS07605
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07605
old locus tag: BbiDN127_E0004
pseudo: true
so part of: sequence
location: 5814..>5948
location: region:5814-5948:1
so has part: feature:5814-5948:1:exon
subclass of: SO_0000010

position:5814:1
position: 5814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5948:1
position: 5948
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5814-5948:1:exon

BBIDN127_RS07605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07605
old locus tag: BbiDN127_E0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
SIO_010081: BBIDN127_RS07605
subclass of: SO_0000673
so part of: BBIDN127_RS07605
location: 5814..>5948
location: region:5814-5948:1
so has part: feature:5814-5948:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5814-5948:1:exon

BBIDN127_RS07725
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07725
so part of: sequence
location: complement(6808..6975)
location: region:6808-6975:-1
so has part: feature:6808-6975:-1:exon
subclass of: SO_0000010

position:6808:-1
position: 6808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6975:-1
position: 6975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6808-6975:-1:exon

BBIDN127_RS07725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540511.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSKIQRSTALNFRLESVPFLVKISLQLIAKNNNFLMILKISKKFKTSVLTTTMK
SIO_010081: BBIDN127_RS07725
subclass of: SO_0000673
so part of: BBIDN127_RS07725
location: complement(6808..6975)
location: region:6808-6975:-1
so has part: feature:6808-6975:-1:exon

WP_158306833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6808-6975:-1:exon

BBIDN127_RS06260
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06260
old locus tag: BbiDN127_E0006
so part of: sequence
location: 7661..8503
location: region:7661-8503:1
so has part: feature:7661-8503:1:exon
subclass of: SO_0000010

position:7661:1
position: 7661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8503:1
position: 8503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7661-8503:1:exon

BBIDN127_RS06260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06260
old locus tag: BbiDN127_E0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S2/P23 family protein
translation: MKKDIRILNIFLYVPLFYSCFFTPPKSSKINSIKTEVFDFKIEEDITKHNKTPIKESNENTCLSFKDPELNEIKEGEVFEILASGYVTWAKSGDLRVLKDKNNNLIEDLRELRYSYIFSPIRFKTFFSYSYSINDNNYTIFRQEVPIAKIIAFESTKEFEKKYEVISLKLNSEESNIDFEQNRIGLAKINLKENSKEPNYIYSYNFGVFDNSLADYFKFFYKKNNCNYMPAYLTIKDKQTDKDKTYEITLNLKLFNDTIRLIFDKYSNLSKEKLKLFIDE
SIO_010081: BBIDN127_RS06260
subclass of: SO_0000673
so part of: BBIDN127_RS06260
location: 7661..8503
location: region:7661-8503:1
so has part: feature:7661-8503:1:exon

WP_014024056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7661-8503:1:exon

BBIDN127_RS06265
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06265
old locus tag: BbiDN127_E0008
so part of: sequence
location: complement(9934..10554)
location: region:9934-10554:-1
so has part: feature:9934-10554:-1:exon
subclass of: SO_0000010

position:9934:-1
position: 9934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10554:-1
position: 10554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9934-10554:-1:exon

BBIDN127_RS06265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06265
old locus tag: BbiDN127_E0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890264.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein BptA
translation: MRKILFFGLLSICFLFVFFFYKQKENKIIYNKIVEKFEDNVVIDETYTHLFKDSNLKELVFIKSRLIIPELEHKKMMKATGYRADAYRALSTVYKFDFKVHDNKILGFKSVIFEGFEDAKVSKHENNLPSEKWQQLKDFNIGDPNINEKFFHLEFPFVVKNTLCVTISKGFFKKIKKLKRLKIMLISNEDREYKIDIENFLPKYNL
SIO_010081: BBIDN127_RS06265
subclass of: SO_0000673
so part of: BBIDN127_RS06265
location: complement(9934..10554)
location: region:9934-10554:-1
so has part: feature:9934-10554:-1:exon

WP_014024058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9934-10554:-1:exon

BBIDN127_RS06270
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06270
old locus tag: BbiDN127_E0009
so part of: sequence
location: complement(10567..11076)
location: region:10567-11076:-1
so has part: feature:10567-11076:-1:exon
subclass of: SO_0000010

position:10567:-1
position: 10567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11076:-1
position: 11076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10567-11076:-1:exon

BBIDN127_RS06270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06270
old locus tag: BbiDN127_E0009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012665732.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVIILLLFFLLISNSFIFSSAASEEVVILNDSNRYDFGLILKLKTQFGSFILRHCHEGYIDLDFKIQIKNSTEIVFKKVYINGVSVIDHPINARSRFIDEVNYFNFDMSFFEHSEKMNKIRKLAEENGIDVYVECFDEINNEKKKYFFKVSRENSVHFYSAFDMIFHK
SIO_010081: BBIDN127_RS06270
subclass of: SO_0000673
so part of: BBIDN127_RS06270
location: complement(10567..11076)
location: region:10567-11076:-1
so has part: feature:10567-11076:-1:exon

WP_044055022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10567-11076:-1:exon

BBIDN127_RS06275
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06275
old locus tag: BbiDN127_E0010
so part of: sequence
location: complement(11774..12355)
location: region:11774-12355:-1
so has part: feature:11774-12355:-1:exon
subclass of: SO_0000010

position:11774:-1
position: 11774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12355:-1
position: 12355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11774-12355:-1:exon

BBIDN127_RS06275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06275
old locus tag: BbiDN127_E0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890263.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MSLKLKHMNIKIKDRINTGKNQKKIKINCDEDKMERFLFLKERLIINFQKEIHNKIETMKILKEIKDKEYYKLDGYQNFEMFTRNYKIAKSQAYEYLRMANAIEEGLVQEKYIIENGIQNSLFFLKDKEGGKVKKSNRNFIRPLRFQLKTENAYIYYKSKARFTSFLLEKLLKDKEELLNEIMKEYKECKKYN
SIO_010081: BBIDN127_RS06275
subclass of: SO_0000673
so part of: BBIDN127_RS06275
location: complement(11774..12355)
location: region:11774-12355:-1
so has part: feature:11774-12355:-1:exon

WP_014024060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11774-12355:-1:exon

BBIDN127_RS06280
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06280
old locus tag: BbiDN127_E0011
so part of: sequence
location: complement(12372..13130)
location: region:12372-13130:-1
so has part: feature:12372-13130:-1:exon
subclass of: SO_0000010

position:12372:-1
position: 12372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13130:-1
position: 13130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12372-13130:-1:exon

BBIDN127_RS06280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06280
old locus tag: BbiDN127_E0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024061.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRENTKIIAICSIKGGVGKSTSAIIFSTLLSKKYKVLLIDADPQASTTSYFSDLLEEQGVDVSKQNIYEVLADKKNINSSTFGLNNNLHILPSYIYLYLFYDDNIPFKETRLKDSLKLLKHKYDYIIIDTSPSLGIILTNVLVVSKYIIIPMTAQKWSVESMQLLEFALKRLKLKIPIFPMVTNFKKNNTYKHLLELISRDDNFLGVIHEREDLNKRIAENDTFDLNKDYIKEYEITLEKFFQLSKKFLIS
SIO_010081: BBIDN127_RS06280
subclass of: SO_0000673
so part of: BBIDN127_RS06280
location: complement(12372..13130)
location: region:12372-13130:-1
so has part: feature:12372-13130:-1:exon

WP_014024061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12372-13130:-1:exon

BBIDN127_RS06285
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06285
old locus tag: BbiDN127_E0012
so part of: sequence
location: complement(13106..13669)
location: region:13106-13669:-1
so has part: feature:13106-13669:-1:exon
subclass of: SO_0000010

position:13106:-1
position: 13106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13669:-1
position: 13669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13106-13669:-1:exon

BBIDN127_RS06285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06285
old locus tag: BbiDN127_E0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012622410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKSVLEKLKNKKKEIIKKSRKPEIFIKKEILNERAIYHTKMLMDLYKFEINKYKKNKFLILFRELFNQGKLEGLNLFSTKENDKFIGIFYGYRKPIKNIIIKYKINGTLKSYTFSKVYYIEFKFKKGSVFCYLRSLARLIKREKINKKYFQTFIDMLNRLEKKVYEFYCKELPDGGIVNKWIEKTLK
SIO_010081: BBIDN127_RS06285
subclass of: SO_0000673
so part of: BBIDN127_RS06285
location: complement(13106..13669)
location: region:13106-13669:-1
so has part: feature:13106-13669:-1:exon

WP_014024062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13106-13669:-1:exon

BBIDN127_RS06290
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06290
old locus tag: BbiDN127_E0013
so part of: sequence
location: complement(13679..14752)
location: region:13679-14752:-1
so has part: feature:13679-14752:-1:exon
subclass of: SO_0000010

position:13679:-1
position: 13679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14752:-1
position: 14752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13679-14752:-1:exon

BBIDN127_RS06290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06290
old locus tag: BbiDN127_E0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024063.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKVNKSLQIQSKYQHKLIALIATLEYINKNKKKYNQSDILYCFNSNLRRNGQKEVSIKTLRNYFYKLEKLNITINYYRHLGINMGTEIYYALRYSKKDCYNLLNQHFRNKKTERFQRRVNAYIKINYDKKDNVKNGECLNNKYIKEERETERKKRVNKLKLKKYAKKCNFDNEISSFIISLNLKKETTIKLFKFIIKEKYYLKKENNCNLQKTPQNKKRDLILILRKAQKNLIKEGYDQRKIETQIQNTYQKYKNKPHFILESNKYKDFDQIIKKIKDNTNKTESQKHKDNMKTNIYNILLDQLHNKTNTTNLRSKIKEYLNKQNKLEYKKIFNNQYYNEIIKLIESQNIYKNSYIN
SIO_010081: BBIDN127_RS06290
subclass of: SO_0000673
so part of: BBIDN127_RS06290
location: complement(13679..14752)
location: region:13679-14752:-1
so has part: feature:13679-14752:-1:exon

WP_014024063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13679-14752:-1:exon

BBIDN127_RS06295
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06295
old locus tag: BbiDN127_E0014
so part of: sequence
location: complement(15314..15892)
location: region:15314-15892:-1
so has part: feature:15314-15892:-1:exon
subclass of: SO_0000010

position:15314:-1
position: 15314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15892:-1
position: 15892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15314-15892:-1:exon

BBIDN127_RS06295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06295
old locus tag: BbiDN127_E0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486448.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isochorismatase family protein
translation: MLIDIQNDFLESGALPVSNSNEIIYLINQLQNYFKNIVATKDWHCKNHVSFSNNKNGGIWPEHCVKNTWGSEFPNDLNKKRIKKVFFKGTDQYYDSYSGFYDDYTKKKQTGLQLYLKNNSINTLFIAGLALDFCVKETILDAINLGFQVYLITDATRSITATPELIIQELKKLNVLTCFSKDIFDSQSKLNI
SIO_010081: BBIDN127_RS06295
subclass of: SO_0000673
so part of: BBIDN127_RS06295
location: complement(15314..15892)
location: region:15314-15892:-1
so has part: feature:15314-15892:-1:exon

WP_231012370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15314-15892:-1:exon

BBIDN127_RS07845
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07845
old locus tag: BbiDN127_E0016
pseudo: true
so part of: sequence
location: <16816..16998
location: region:16816-16998:1
so has part: feature:16816-16998:1:exon
subclass of: SO_0000010

position:16816:1
position: 16816
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:16998:1
position: 16998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16816-16998:1:exon

BBIDN127_RS07845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07845
old locus tag: BbiDN127_E0016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014024061.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParA family protein
SIO_010081: BBIDN127_RS07845
subclass of: SO_0000673
so part of: BBIDN127_RS07845
location: <16816..16998
location: region:16816-16998:1
so has part: feature:16816-16998:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16816-16998:1:exon

BBIDN127_RS07850
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07850
so part of: sequence
location: 17411..17539
location: region:17411-17539:1
so has part: feature:17411-17539:1:exon
subclass of: SO_0000010

position:17411:1
position: 17411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17539:1
position: 17539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17411-17539:1:exon

BBIDN127_RS07850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07850
inference: COORDINATES: protein motif:HMM:NF013808.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition family protein
translation: MKIKKSNRNFIRPLRFQFKTWNAYKYCKSKAKFIIFFVRKIT
SIO_010081: BBIDN127_RS07850
subclass of: SO_0000673
so part of: BBIDN127_RS07850
location: 17411..17539
location: region:17411-17539:1
so has part: feature:17411-17539:1:exon

WP_233421658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17411-17539:1:exon

BBIDN127_RS07855
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07855
pseudo: true
so part of: sequence
location: <17829..17957
location: region:17829-17957:1
so has part: feature:17829-17957:1:exon
subclass of: SO_0000010

position:17829:1
position: 17829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:17957:1
position: 17957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17829-17957:1:exon

BBIDN127_RS07855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703891.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParA family protein
SIO_010081: BBIDN127_RS07855
subclass of: SO_0000673
so part of: BBIDN127_RS07855
location: <17829..17957
location: region:17829-17957:1
so has part: feature:17829-17957:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17829-17957:1:exon

BBIDN127_RS07860
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07860
so part of: sequence
location: 21683..21787
location: region:21683-21787:1
so has part: feature:21683-21787:1:exon
subclass of: SO_0000010

position:21683:1
position: 21683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21787:1
position: 21787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21683-21787:1:exon

BBIDN127_RS07860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07860
inference: COORDINATES: protein motif:HMM:NF013808.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFSFYEFCKEDAKRAYFIFERLFFIKKRNLIRFN
SIO_010081: BBIDN127_RS07860
subclass of: SO_0000673
so part of: BBIDN127_RS07860
location: 21683..21787
location: region:21683-21787:1
so has part: feature:21683-21787:1:exon

WP_233421657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21683-21787:1:exon

BBIDN127_RS06315
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06315
old locus tag: BbiDN127_E0023
so part of: sequence
location: complement(21917..22645)
location: region:21917-22645:-1
so has part: feature:21917-22645:-1:exon
subclass of: SO_0000010

position:21917:-1
position: 21917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22645:-1
position: 22645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21917-22645:-1:exon

BBIDN127_RS06315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06315
old locus tag: BbiDN127_E0023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540851.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKYHIIVSIFIFLFLNACNPDSNTNQNNSKKGLKTEKIPNKQIKNKLLDDFKNLIETANADRKKYEKKLEEEPSNQYGISIFKEIYWIASYETVADNTERSKNYRKFTYATLNSININKLANLSKILIQSKQKTLLFGTFCNLGSTFDTAINHLYPKKDALDALAVSDLKQLKNSLEKLLSIKTDISKMLEQLLLDYKDYINSTETDIAKLESHLTELYKQIEKKSSQATKLKNNILSISNL
SIO_010081: BBIDN127_RS06315
subclass of: SO_0000673
so part of: BBIDN127_RS06315
location: complement(21917..22645)
location: region:21917-22645:-1
so has part: feature:21917-22645:-1:exon

WP_014024073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21917-22645:-1:exon

BBIDN127_RS06320
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06320
old locus tag: BbiDN127_E0024
so part of: sequence
location: 22818..23024
location: region:22818-23024:1
so has part: feature:22818-23024:1:exon
subclass of: SO_0000010

position:22818:1
position: 22818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23024:1
position: 23024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22818-23024:1:exon

BBIDN127_RS06320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06320
old locus tag: BbiDN127_E0024
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKDSQLTVSSGENDTVKIAVEIGVTKTLVVLINVLKYSFGVIIENLLNEVRKIPLRFSVDVEQYGYQ
SIO_010081: BBIDN127_RS06320
subclass of: SO_0000673
so part of: BBIDN127_RS06320
location: 22818..23024
location: region:22818-23024:1
so has part: feature:22818-23024:1:exon

WP_014024074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22818-23024:1:exon