Borreliella bissettiae DN127 plasmid lp28-7, complete sequence.
type: Entry
definition: Borreliella bissettiae DN127 plasmid lp28-7, complete sequence.
sequence version: NC_015918.1
sequence date: 2022-12-07
sequence: sequence
division: CON
label: NC_015918.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604204
keyword: RefSeq
source: Borreliella bissettiae DN127
organism: Borreliella bissettiae DN127
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002760.1.\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:43:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,449\nCDSs (total) :: 1,409\nGenes (coding) :: 1,335\nCDSs (with protein) :: 1,335\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 44 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 30 of 74\nPseudo Genes (multiple problems) :: 23 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 30502
topology: linear
so has quality: SO_0000987
location: 1..30502
location: region:1-30502:1
RO_0002162: 521010

NC_015918
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604204
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Mongodin, E.F.
author: Casjens, S.R.
author: Fraser-Liggett, C.M.
author: Qiu, W.-G.
author: Dunn, J.J.
author: Luft, B.J.
author: Schutzer, S.E.
journal: Submitted (27-JUN-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30502:1
position: 30502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30502:1:source
so part of: sequence
organism: Borreliella bissettiae DN127
mol type: genomic DNA
strain: DN127
host: Ixodes pacificus (western blackleg tick)
type material: type strain of Borrelia bissettiae
plasmid: lp28-7
country: USA: California

521010
type: Taxonomy
SIO_000068: taxonomy

BBIDN127_RS06530
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06530
old locus tag: BbiDN127_AA0001
so part of: sequence
location: complement(307..1440)
location: region:307-1440:-1
so has part: feature:307-1440:-1:exon
subclass of: SO_0000010

position:307:-1
position: 307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1440:-1
position: 1440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307-1440:-1:exon

BBIDN127_RS06530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06530
old locus tag: BbiDN127_AA0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023152.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA-guided endonuclease TnpB family protein
translation: MSANKAYKCRIYPNTNQKKYFSKVFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSKYKDEFPFLKEVDSLALCSTWIDLNFAYSNFFREIKKGNRMQGFPKYKSKKNRQTFRTNNQKNSIRIENGYIKLPKIGFVKLCLHRCIKDNELIKNVVVEKDIDDKYYISIIVECLDTKNINETKGDKKEIVGIDMSMRHFLVSSEGEKINHPKYLLKNENKLKKYQRKLSKKQKGSINRAKSRLRVAKLHKKISNQRKDFLHKLSYYFVSNYKNIVIENLSIKGMQKGMFGKSINDLGWSEFVRQLSYKSEWYGSPLYKADRYFPSSKLCSSCHIKNTTLRLSDTRWTCSSCNTLHDRDINAALNLKAYYYKEIKTKAGTA
SIO_010081: BBIDN127_RS06530
subclass of: SO_0000673
so part of: BBIDN127_RS06530
location: complement(307..1440)
location: region:307-1440:-1
so has part: feature:307-1440:-1:exon

WP_014023152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:307-1440:-1:exon

BBIDN127_RS06535
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06535
old locus tag: BbiDN127_AA0002
so part of: sequence
location: 1566..2069
location: region:1566-2069:1
so has part: feature:1566-2069:1:exon
subclass of: SO_0000010

position:1566:1
position: 1566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2069:1
position: 2069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1566-2069:1:exon

BBIDN127_RS06535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06535
old locus tag: BbiDN127_AA0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257392.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P13 family porin
translation: MKKIFTLILIFSLTMQIFAQEKLEKGVGDIATVMKYESEKATILAPLLLNIFLSLGIGSFVQGDYIGGGALLGSQMLGGILIMAGYMTGGIGGATGSTSAVITGGVLSGIGGLTIAASYITGIIIPFKFANRYNADLKKRLGIALAGLEPNFDIGINGFQLSFKKSY
SIO_010081: BBIDN127_RS06535
subclass of: SO_0000673
so part of: BBIDN127_RS06535
location: 1566..2069
location: region:1566-2069:1
so has part: feature:1566-2069:1:exon

WP_014023153.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1566-2069:1:exon

BBIDN127_RS07375
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07375
old locus tag: BbiDN127_AA0003
pseudo: true
so part of: sequence
location: complement(<2212..>2642)
location: region:2212-2642:-1
so has part: feature:2212-2642:-1:exon
subclass of: SO_0000010

position:2212:-1
position: 2212
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:2642:-1
position: 2642
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2212-2642:-1:exon

BBIDN127_RS07375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07375
old locus tag: BbiDN127_AA0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703862.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
SIO_010081: BBIDN127_RS07375
subclass of: SO_0000673
so part of: BBIDN127_RS07375
location: complement(<2212..>2642)
location: region:2212-2642:-1
so has part: feature:2212-2642:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2212-2642:-1:exon

BBIDN127_RS07180
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07180
old locus tag: BbiDN127_AA0006
so part of: sequence
location: 3250..4239
location: region:3250-4239:1
so has part: feature:3250-4239:1:exon
subclass of: SO_0000010

position:3250:1
position: 3250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4239:1
position: 4239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3250-4239:1:exon

BBIDN127_RS07180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07180
old locus tag: BbiDN127_AA0006
inference: COORDINATES: protein motif:HMM:NF018486.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Erp protein
translation: MKYHIIASMFIFLFLACNLDFKANQNDTKYQSKKGLKTETSSNQKQTNLSNKNTKSEKDINKSSKNNITTSSDAKVIIENSDKEGKKNIESTISKKTILSNIIQELKKTDKQIPESTKEQQQKEQQQKEQQQKEQQQKEQQQKEQQQKEQQQKEQQQKEQQQKEQQNIKKAKHEIEDAIKKITNILKNINSIKYGNSYIEKINKTEVTGKEIQNKVSDPLWDDIIGTDYIHSDNSIYNKWGEYLSDDIEEKLNSNNFFYELSNIRSQLKDLIYDDINNRNTLKLNIISGSDFEKIKEKLNEIQNYLERLKDYLKDQNNFSIIREAIDFE
SIO_010081: BBIDN127_RS07180
subclass of: SO_0000673
so part of: BBIDN127_RS07180
location: 3250..4239
location: region:3250-4239:1
so has part: feature:3250-4239:1:exon

WP_014023155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3250-4239:1:exon

BBIDN127_RS07765
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07765
old locus tag: BbiDN127_AA0007
so part of: sequence
location: complement(4365..4520)
location: region:4365-4520:-1
so has part: feature:4365-4520:-1:exon
subclass of: SO_0000010

position:4365:-1
position: 4365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4520:-1
position: 4520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4365-4520:-1:exon

BBIDN127_RS07765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07765
old locus tag: BbiDN127_AA0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002662141.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENIFDYLELNMPIEICVLKDMKRVIYKFYESILYIENDIETISLLSLYKS
SIO_010081: BBIDN127_RS07765
subclass of: SO_0000673
so part of: BBIDN127_RS07765
location: complement(4365..4520)
location: region:4365-4520:-1
so has part: feature:4365-4520:-1:exon

WP_014023156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4365-4520:-1:exon

BBIDN127_RS06555
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06555
old locus tag: BbiDN127_AA0008
so part of: sequence
location: complement(4601..4858)
location: region:4601-4858:-1
so has part: feature:4601-4858:-1:exon
subclass of: SO_0000010

position:4601:-1
position: 4601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4858:-1
position: 4858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4601-4858:-1:exon

BBIDN127_RS06555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06555
old locus tag: BbiDN127_AA0008
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRASP family complement regulator-acquiring lipoprotein
translation: MHDILDKLDISTLEKLREAFKKILSTMKITSETLNQLLLDYQNDKNLMKTDVTKLESYASTLLNQIEEKAKEVKESEKFIKSIVL
SIO_010081: BBIDN127_RS06555
subclass of: SO_0000673
so part of: BBIDN127_RS06555
location: complement(4601..4858)
location: region:4601-4858:-1
so has part: feature:4601-4858:-1:exon

WP_050792377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4601-4858:-1:exon

BBIDN127_RS06560
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06560
pseudo: true
so part of: sequence
location: complement(5079..5587)
location: region:5079-5587:-1
so has part: feature:5079-5587:-1:exon
subclass of: SO_0000010

position:5079:-1
position: 5079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5587:-1
position: 5587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5079-5587:-1:exon

BBIDN127_RS06560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703857.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: P52 family lipoprotein
SIO_010081: BBIDN127_RS06560
subclass of: SO_0000673
so part of: BBIDN127_RS06560
location: complement(5079..5587)
location: region:5079-5587:-1
so has part: feature:5079-5587:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5079-5587:-1:exon

BBIDN127_RS07910
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07910
old locus tag: BbiDN127_AA0010
so part of: sequence
location: 6159..6341
location: region:6159-6341:1
so has part: feature:6159-6341:1:exon
subclass of: SO_0000010

position:6159:1
position: 6159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6341:1
position: 6341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6159-6341:1:exon

BBIDN127_RS07910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07910
old locus tag: BbiDN127_AA0010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFKKFNRQLDGTSKQLSANNERFKAYRKRAYSILNAIDNDALKNFSEIVNGIRPNTRNI
SIO_010081: BBIDN127_RS07910
subclass of: SO_0000673
so part of: BBIDN127_RS07910
location: 6159..6341
location: region:6159-6341:1
so has part: feature:6159-6341:1:exon

WP_014023159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6159-6341:1:exon

BBIDN127_RS07915
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07915
so part of: sequence
location: 6388..6519
location: region:6388-6519:1
so has part: feature:6388-6519:1:exon
subclass of: SO_0000010

position:6388:1
position: 6388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6519:1
position: 6519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6388-6519:1:exon

BBIDN127_RS07915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07915
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYPKKDNLEKLEISALKRLKYSLENFSEEKNCFRNAVKVLIRL
SIO_010081: BBIDN127_RS07915
subclass of: SO_0000673
so part of: BBIDN127_RS07915
location: 6388..6519
location: region:6388-6519:1
so has part: feature:6388-6519:1:exon

WP_233421669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6388-6519:1:exon

BBIDN127_RS07385
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07385
so part of: sequence
location: 7165..7308
location: region:7165-7308:1
so has part: feature:7165-7308:1:exon
subclass of: SO_0000010

position:7165:1
position: 7165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7308:1
position: 7308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7165-7308:1:exon

BBIDN127_RS07385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07385
inference: COORDINATES: protein motif:HMM:NF013921.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MTLNEFNHDKDHIHLLLEFTANIQPSKFINNLKTVSSRLIRKNILLI
SIO_010081: BBIDN127_RS07385
subclass of: SO_0000673
so part of: BBIDN127_RS07385
location: 7165..7308
location: region:7165-7308:1
so has part: feature:7165-7308:1:exon

WP_233421670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7165-7308:1:exon

BBIDN127_RS06570
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06570
old locus tag: BbiDN127_AA0012
so part of: sequence
location: complement(7553..7846)
location: region:7553-7846:-1
so has part: feature:7553-7846:-1:exon
subclass of: SO_0000010

position:7553:-1
position: 7553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7846:-1
position: 7846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7553-7846:-1:exon

BBIDN127_RS06570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06570
old locus tag: BbiDN127_AA0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023161.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5425 family lipoprotein
translation: MNKKFAISLLSIILTFLLVLGCDLSTNNAENKMDDIFNLEKKYMNNSNYKCLSKNESIVKNSKIKLDANNTRSRSYSFRETNVSDSYNKTYSYCKSN
SIO_010081: BBIDN127_RS06570
subclass of: SO_0000673
so part of: BBIDN127_RS06570
location: complement(7553..7846)
location: region:7553-7846:-1
so has part: feature:7553-7846:-1:exon

WP_014023161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7553-7846:-1:exon

BBIDN127_RS06575
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06575
old locus tag: BbiDN127_AA0013
so part of: sequence
location: complement(9508..10569)
location: region:9508-10569:-1
so has part: feature:9508-10569:-1:exon
subclass of: SO_0000010

position:9508:-1
position: 9508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10569:-1
position: 10569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9508-10569:-1:exon

BBIDN127_RS06575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06575
old locus tag: BbiDN127_AA0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703997.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVKSKCLALGLLFGFISCDLFTRDEMKEESPDLFDKGNFILETSEESVKNSMNKKGKGKIARKKGKSKVSRKEPSIHSLKRGSANKSNLLQKNVMLEEESLKTELLKEQSEARKEKIQKQQDEHKGMAQGSLNSLSGESGELGETIESNEIDFTIDSDLRPKSALQTISGSSSISYTDEIEEEDYDQYSLEEYDEDDYEEIRLSNRYQSYLESVKYNVDSAIKTITKIYDTYTLFSTKLTRMYSTRLDNLAKAKAKEEAAKFTKEGLEKNFKTLLNYIQVSLKTATNFVYINDTHAKRKLENIETEIKTLIAKIKEQSNLYEAYKAIVRSILLMRDSLKEVQSTIDKNGVWY
SIO_010081: BBIDN127_RS06575
subclass of: SO_0000673
so part of: BBIDN127_RS06575
location: complement(9508..10569)
location: region:9508-10569:-1
so has part: feature:9508-10569:-1:exon

WP_014023162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9508-10569:-1:exon

BBIDN127_RS06580
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06580
old locus tag: BbiDN127_AA0015
so part of: sequence
location: complement(11434..12186)
location: region:11434-12186:-1
so has part: feature:11434-12186:-1:exon
subclass of: SO_0000010

position:11434:-1
position: 11434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12186:-1
position: 12186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11434-12186:-1:exon

BBIDN127_RS06580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06580
old locus tag: BbiDN127_AA0015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540494.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQLILAIFLLLIISCKWYGDGILEEATAESKSALTSIDQVLDEISETTGLSPGKITKLTPKELENLAKEAQDDSEKSKKEIEDQKNTKKSKNIEVKDTPRLIKLIKNSAEKIDSVFQTLINIGYNATYAAKSNLENGLKMVKLLDELLKIAVSINGDKSNQKYNELKTIVNKFNDENSAIKVPLENCSKIEAKKCIKTLMTNVETYFKGVSTELKDKKDDKYTKILAALSEAANKIENAAMAIHLCFNN
SIO_010081: BBIDN127_RS06580
subclass of: SO_0000673
so part of: BBIDN127_RS06580
location: complement(11434..12186)
location: region:11434-12186:-1
so has part: feature:11434-12186:-1:exon

WP_014023164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11434-12186:-1:exon

BBIDN127_RS07920
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07920
old locus tag: BbiDN127_AA0016
so part of: sequence
location: 13042..13494
location: region:13042-13494:1
so has part: feature:13042-13494:1:exon
subclass of: SO_0000010

position:13042:1
position: 13042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13494:1
position: 13494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13042-13494:1:exon

BBIDN127_RS07920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07920
old locus tag: BbiDN127_AA0016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256956.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKNSAEKIDSVFQTLINIGYNATYAAKSNLENGLKMVKLLDELLKIAVNNGTDNSNTKYAKLKKVVDKFNNENSVSVSLKEHSNSKIETKKCIQTLIKNVETYFEGACSELKNKNDGEYEKTLTTLSEVANKIKSAAIAIIYSYALIRL
SIO_010081: BBIDN127_RS07920
subclass of: SO_0000673
so part of: BBIDN127_RS07920
location: 13042..13494
location: region:13042-13494:1
so has part: feature:13042-13494:1:exon

WP_233421665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13042-13494:1:exon

BBIDN127_RS06590
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06590
old locus tag: BbiDN127_AA0017
so part of: sequence
location: complement(13563..14258)
location: region:13563-14258:-1
so has part: feature:13563-14258:-1:exon
subclass of: SO_0000010

position:13563:-1
position: 13563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14258:-1
position: 14258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13563-14258:-1:exon

BBIDN127_RS06590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06590
old locus tag: BbiDN127_AA0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006068318.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SIMPL domain-containing protein
translation: MFRGKEISFLLFSLLLFMSSIIISHGIKNIGTKNENYITVKGLSEREILSTSSSWEFRYSLTGDTINDINKANNLSLSKIKSFFLKQGFSEDHIKMGFMEFNEENYKESLYKYRAYISLTVHTKNIEQMEAAEKNIAELYNQGILISNSGGPRYYFDNINDIKPEMLADSIRNAKLAALEFAKHSSSKLGKIKNANQGYFEFLPIDRSLGAQERYPKKILRIVTTVSYYLD
SIO_010081: BBIDN127_RS06590
subclass of: SO_0000673
so part of: BBIDN127_RS06590
location: complement(13563..14258)
location: region:13563-14258:-1
so has part: feature:13563-14258:-1:exon

WP_014023166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13563-14258:-1:exon

BBIDN127_RS07925
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07925
pseudo: true
so part of: sequence
location: 14781..15406
location: region:14781-15406:1
so has part: feature:14781-15406:1:exon
subclass of: SO_0000010

position:14781:1
position: 14781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15406:1
position: 15406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14781-15406:1:exon

BBIDN127_RS07925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07925
inference: COORDINATES: protein motif:HMM:NF017525.2
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
SIO_010081: BBIDN127_RS07925
subclass of: SO_0000673
so part of: BBIDN127_RS07925
location: 14781..15406
location: region:14781-15406:1
so has part: feature:14781-15406:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14781-15406:1:exon

BBIDN127_RS06600
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: ade
locus tag: BBIDN127_RS06600
old locus tag: BbiDN127_AA0020
so part of: sequence
location: 15708..17354
location: region:15708-17354:1
so has part: feature:15708-17354:1:exon
subclass of: SO_0000010

position:15708:1
position: 15708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17354:1
position: 17354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15708-17354:1:exon

BBIDN127_RS06600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: ade
locus tag: BBIDN127_RS06600
old locus tag: BbiDN127_AA0020
EC number: 3.5.4.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258330.1
GO function: GO:0000034 - adenine deaminase activity [Evidence IEA]
GO process: GO:0006168 - adenine salvage [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: adenine deaminase
translation: MDLFKIEANYIDIFNKEIYPASIAIANGHIVSIEKINATLDEYVLPGFIDAHIHIESSFLIPSNFAHLVVAHGTVATISDPHEIANVNGIDGINFMINNSKKTEFKFFFGAPSCVPALSQEFETSGYVLNDKDIDELMKLDDIYYLAEVMDFKGVINKDVEIINKINSALKRNKVVDGHAPGLSPNLTLKYASSGISTDHECLTIEDARYKLSLGMKIIIREGSAAKNFESLHPLISECPKKYCDSLMFCFDDAHPNDILNGHINLIVARAIEHGHDFFDVLKIACINPVLHYKIPVGLLRIGDPADFIITKDIKTFKIDKTYINGKLVFNDGISLIPLINEIPINNFNCSKKSISDFKFSTKNKMIPVINCISNQIITHKTMINSNLLAPDFQSNLAEDILKIAIINRYKDNSKISIGFIKNFGIRNGAIGSTVAHDSHNIILVGSNDEYLCKAANIIIQNKGGLCALNNEKTIIMKLPISGLMSTLSAEEIASQYIKLNDFCKNVLGSQLDDPLMTLSFMSLTVVPHLKINDKGLFDVDSFCFLDY
SIO_010081: BBIDN127_RS06600
subclass of: SO_0000673
so part of: BBIDN127_RS06600
location: 15708..17354
location: region:15708-17354:1
so has part: feature:15708-17354:1:exon

WP_014023169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15708-17354:1:exon

BBIDN127_RS06605
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06605
old locus tag: BbiDN127_AA0021
so part of: sequence
location: 18005..18640
location: region:18005-18640:1
so has part: feature:18005-18640:1:exon
subclass of: SO_0000010

position:18005:1
position: 18005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18640:1
position: 18640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18005-18640:1:exon

BBIDN127_RS06605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06605
old locus tag: BbiDN127_AA0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010259178.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKYIINLSLCLLLFSCDLFSKDSRSHQKYNFKVPAKSVSNPTNKEDIDTEKGTNTTLCIKEADSRIIIKDCINNQELFKVKSKRRYDFKKAMLLGVKTALKVINIGNNNKKLNSIKKHKDHILLEFKDNKIYIIRLSELKRHLLKSNKKPLLGSPVPGGGDAEFVDDPDGRIEAELEAEKEQEMLDREDFGDEEDEELEEEIFGKEKPNN
SIO_010081: BBIDN127_RS06605
subclass of: SO_0000673
so part of: BBIDN127_RS06605
location: 18005..18640
location: region:18005-18640:1
so has part: feature:18005-18640:1:exon

WP_014023170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18005-18640:1:exon

BBIDN127_RS07395
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07395
old locus tag: BbiDN127_AA0022
so part of: sequence
location: 18955..19215
location: region:18955-19215:1
so has part: feature:18955-19215:1:exon
subclass of: SO_0000010

position:18955:1
position: 18955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19215:1
position: 19215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18955-19215:1:exon

BBIDN127_RS07395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07395
old locus tag: BbiDN127_AA0022
inference: COORDINATES: protein motif:HMM:NF017444.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P13 family porin
translation: MLIITGKSFFESRLKDTKPTMPEHILTSIGGLMIAASYITGIIIPFTFANKYNTNLKKRLGIVLAGFEPNFDIEINGFQLSFKKSY
SIO_010081: BBIDN127_RS07395
subclass of: SO_0000673
so part of: BBIDN127_RS07395
location: 18955..19215
location: region:18955-19215:1
so has part: feature:18955-19215:1:exon

WP_014023171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18955-19215:1:exon

BBIDN127_RS06615
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06615
old locus tag: BbiDN127_AA0023
so part of: sequence
location: complement(19397..19951)
location: region:19397-19951:-1
so has part: feature:19397-19951:-1:exon
subclass of: SO_0000010

position:19397:-1
position: 19397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19951:-1
position: 19951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19397-19951:-1:exon

BBIDN127_RS06615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06615
old locus tag: BbiDN127_AA0023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256708.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MSKDLIILNDREEGLMGISEEEEYENYKYALKKSMVNDIENKIKIMEILYNIKNKKLYRIDGHVSFKSFIEEFLIARTQAYLYLKIYERVLKGDLSIKEIRDKGMIEIYRNIKSKEVVDKKLIQNSIKPLRFQLKRQDSYDFYKSNAKFTGYLLDKIFSSDKDYLNKIFKEYYDLNLKKTKQNI
SIO_010081: BBIDN127_RS06615
subclass of: SO_0000673
so part of: BBIDN127_RS06615
location: complement(19397..19951)
location: region:19397-19951:-1
so has part: feature:19397-19951:-1:exon

WP_014023172.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19397-19951:-1:exon

BBIDN127_RS06620
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06620
old locus tag: BbiDN127_AA0024
so part of: sequence
location: complement(20031..20792)
location: region:20031-20792:-1
so has part: feature:20031-20792:-1:exon
subclass of: SO_0000010

position:20031:-1
position: 20031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20792:-1
position: 20792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20031-20792:-1:exon

BBIDN127_RS06620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06620
old locus tag: BbiDN127_AA0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023173.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDNKKPEIISIANIKGGVGKSVLTIIFSFILKSFDKKVLLVDFDPQNSLTSYFFKYIKSLSKNNVYSFLKEDSNANLDKYLTKIHDNVYLIPSHPSLHLFNKENTSYKELFLKHRLERVFSNYNFNYVIIDTPPNLDSLLDNALNITNRLIIPIQVERFSVESLSILMKYIEKVSMYLDKDIDISIIENQFMKNRNTFKSIENSIKDKYGKYIKGKVHFYNKVKVFTNNLQEPNVKEPYYQECLEALKNILGI
SIO_010081: BBIDN127_RS06620
subclass of: SO_0000673
so part of: BBIDN127_RS06620
location: complement(20031..20792)
location: region:20031-20792:-1
so has part: feature:20031-20792:-1:exon

WP_014023173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20031-20792:-1:exon

BBIDN127_RS06625
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06625
old locus tag: BbiDN127_AA0025
so part of: sequence
location: complement(20768..21343)
location: region:20768-21343:-1
so has part: feature:20768-21343:-1:exon
subclass of: SO_0000010

position:20768:-1
position: 20768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21343:-1
position: 21343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20768-21343:-1:exon

BBIDN127_RS06625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06625
old locus tag: BbiDN127_AA0025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MNQILEGLKYKKMEIGLPKKKNNIFMKKEKINNKTLYHTKIFRDVFTFGINQRNENKFFITLRNLFDKNEKSSFQLFGIKESINDEFLGMFYGFKRFPRPLFLKYKDVITKAIKIVPMYKIHYIEFRYKKGSVFCYIKAIHALTKKEKFKKKYAQNLLERIINLEHKVYRFYNKNLSNGGIIIKWITKNQK
SIO_010081: BBIDN127_RS06625
subclass of: SO_0000673
so part of: BBIDN127_RS06625
location: complement(20768..21343)
location: region:20768-21343:-1
so has part: feature:20768-21343:-1:exon

WP_014023174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20768-21343:-1:exon

BBIDN127_RS06630
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06630
old locus tag: BbiDN127_AA0026
so part of: sequence
location: complement(21362..22054)
location: region:21362-22054:-1
so has part: feature:21362-22054:-1:exon
subclass of: SO_0000010

position:21362:-1
position: 21362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22054:-1
position: 22054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21362-22054:-1:exon

BBIDN127_RS06630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06630
old locus tag: BbiDN127_AA0026
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MQTNNLKIQINVNLLKKYQIRYYKILSILKYFQKNAIKYNQKLILNTLNYFLAQDGLKEIALRTLRKDLTWLCNKSIIKKTLLRLGEGNGSYIRYSVNKYSNNNLNCVLKNKQNTIEHDANIIYKFTKETQKNYFKNKGVRASSLKNATKNVSHIINNKKHINNKEKVSHKTKNKNLNSIDLKIKTLLKFKKINFLDKVKENSNKRKYLYKRIETKEWLERIKNQICYDK
SIO_010081: BBIDN127_RS06630
subclass of: SO_0000673
so part of: BBIDN127_RS06630
location: complement(21362..22054)
location: region:21362-22054:-1
so has part: feature:21362-22054:-1:exon

WP_014023175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21362-22054:-1:exon

BBIDN127_RS07930
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07930
so part of: sequence
location: complement(22429..22731)
location: region:22429-22731:-1
so has part: feature:22429-22731:-1:exon
subclass of: SO_0000010

position:22429:-1
position: 22429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22731:-1
position: 22731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22429-22731:-1:exon

BBIDN127_RS07930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07930
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWIRLKKTNIALLESKNYSPGELIPIRRAGEIAVALDSTFTTPKIGDFVFLKAGKLVKDGKGSMQVGRIKDVSIETSSKVVLLDVNIGPEFESNGNRKFA
SIO_010081: BBIDN127_RS07930
subclass of: SO_0000673
so part of: BBIDN127_RS07930
location: complement(22429..22731)
location: region:22429-22731:-1
so has part: feature:22429-22731:-1:exon

WP_233421666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22429-22731:-1:exon

BBIDN127_RS07935
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07935
so part of: sequence
location: complement(22692..22913)
location: region:22692-22913:-1
so has part: feature:22692-22913:-1:exon
subclass of: SO_0000010

position:22692:-1
position: 22692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22913:-1
position: 22913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22692-22913:-1:exon

BBIDN127_RS07935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07935
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MCKNFVLGVEHKACVHQTETAIVNVESPTIKPGDLVYSSGSSEMGEVLVKAATATAGVGPICGFALKKQILLY
SIO_010081: BBIDN127_RS07935
subclass of: SO_0000673
so part of: BBIDN127_RS07935
location: complement(22692..22913)
location: region:22692-22913:-1
so has part: feature:22692-22913:-1:exon

WP_233421667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22692-22913:-1:exon

BBIDN127_RS06640
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06640
old locus tag: BbiDN127_AA0031
pseudo: true
so part of: sequence
location: 23060..24352
location: region:23060-24352:1
so has part: feature:23060-24352:1:exon
subclass of: SO_0000010

position:23060:1
position: 23060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24352:1
position: 24352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23060-24352:1:exon

BBIDN127_RS06640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06640
old locus tag: BbiDN127_AA0031
inference: COORDINATES: protein motif:HMM:NF014468.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid maintenance protein
SIO_010081: BBIDN127_RS06640
subclass of: SO_0000673
so part of: BBIDN127_RS06640
location: 23060..24352
location: region:23060-24352:1
so has part: feature:23060-24352:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23060-24352:1:exon

BBIDN127_RS07940
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07940
old locus tag: BbiDN127_AA0032
so part of: sequence
location: 24377..24598
location: region:24377-24598:1
so has part: feature:24377-24598:1:exon
subclass of: SO_0000010

position:24377:1
position: 24377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24598:1
position: 24598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24377-24598:1:exon

BBIDN127_RS07940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07940
old locus tag: BbiDN127_AA0032
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIRMKHLVRSLYLRRDKIWHIYRSTEVQNKAKDKSITNFPNLKPEDFDYEYVYKFVDEWIQKKYNNKLGFYY
SIO_010081: BBIDN127_RS07940
subclass of: SO_0000673
so part of: BBIDN127_RS07940
location: 24377..24598
location: region:24377-24598:1
so has part: feature:24377-24598:1:exon

WP_014023177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24377-24598:1:exon

BBIDN127_RS07965
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07965
old locus tag: BbiDN127_AA0033
so part of: sequence
location: 24659..24781
location: region:24659-24781:1
so has part: feature:24659-24781:1:exon
subclass of: SO_0000010

position:24659:1
position: 24659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24781:1
position: 24781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24659-24781:1:exon

BBIDN127_RS07965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07965
old locus tag: BbiDN127_AA0033
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARIVKDYKEIFLGRLQKNGPGGVAAVPGSGDSGPKPSGS
SIO_010081: BBIDN127_RS07965
subclass of: SO_0000673
so part of: BBIDN127_RS07965
location: 24659..24781
location: region:24659-24781:1
so has part: feature:24659-24781:1:exon

WP_014023178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24659-24781:1:exon

BBIDN127_RS06650
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06650
old locus tag: BbiDN127_AA0034
so part of: sequence
location: 25041..25493
location: region:25041-25493:1
so has part: feature:25041-25493:1:exon
subclass of: SO_0000010

position:25041:1
position: 25041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25493:1
position: 25493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25041-25493:1:exon

BBIDN127_RS06650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06650
old locus tag: BbiDN127_AA0034
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486298.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MLYPVKEGDAFLGVFYGYSKVKNNPFYRDYTSVCSFSKKIFKTFNKSYFIEFRFKKGSVFLYLHAIAYLLKDRDSYNREQKKLHVRLMELEKEVFKFYGRDLNPQGECIITKWIDKINQKKLGKRIILVCFAVCYVVDCVDFEFVMLLKE
SIO_010081: BBIDN127_RS06650
subclass of: SO_0000673
so part of: BBIDN127_RS06650
location: 25041..25493
location: region:25041-25493:1
so has part: feature:25041-25493:1:exon

WP_233421668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25041-25493:1:exon

BBIDN127_RS06655
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06655
old locus tag: BbiDN127_AA0036
pseudo: true
so part of: sequence
location: 25499..26323
location: region:25499-26323:1
so has part: feature:25499-26323:1:exon
subclass of: SO_0000010

position:25499:1
position: 25499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26323:1
position: 26323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25499-26323:1:exon

BBIDN127_RS06655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06655
old locus tag: BbiDN127_AA0036
inference: COORDINATES: protein motif:HMM:NF015736.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DnaB helicase C-terminal domain-containing protein
SIO_010081: BBIDN127_RS06655
subclass of: SO_0000673
so part of: BBIDN127_RS06655
location: 25499..26323
location: region:25499-26323:1
so has part: feature:25499-26323:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25499-26323:1:exon

BBIDN127_RS07970
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07970
old locus tag: BbiDN127_AA0037
so part of: sequence
location: 26515..26649
location: region:26515-26649:1
so has part: feature:26515-26649:1:exon
subclass of: SO_0000010

position:26515:1
position: 26515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26649:1
position: 26649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26515-26649:1:exon

BBIDN127_RS07970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07970
old locus tag: BbiDN127_AA0037
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVNLEQRLETKLEANNKVLLEKLSVKNRVSVVIASVVLPIVFLF
SIO_010081: BBIDN127_RS07970
subclass of: SO_0000673
so part of: BBIDN127_RS07970
location: 26515..26649
location: region:26515-26649:1
so has part: feature:26515-26649:1:exon

WP_267879466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26515-26649:1:exon

BBIDN127_RS07945
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07945
pseudo: true
so part of: sequence
location: complement(26712..>27100)
location: region:26712-27100:-1
so has part: feature:26712-27100:-1:exon
subclass of: SO_0000010

position:26712:-1
position: 26712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27100:-1
position: 27100
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26712-27100:-1:exon

BBIDN127_RS07945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540508.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: BBIDN127_RS07945
subclass of: SO_0000673
so part of: BBIDN127_RS07945
location: complement(26712..>27100)
location: region:26712-27100:-1
so has part: feature:26712-27100:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26712-27100:-1:exon

BBIDN127_RS06665
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06665
old locus tag: BbiDN127_AA0039
so part of: sequence
location: 27086..27466
location: region:27086-27466:1
so has part: feature:27086-27466:1:exon
subclass of: SO_0000010

position:27086:1
position: 27086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27466:1
position: 27466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27086-27466:1:exon

BBIDN127_RS06665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06665
old locus tag: BbiDN127_AA0039
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486479.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFGSNGNLLRKKNYHKINPDEFILICEHLINSYSITHQLLGIIMASGIPLTHIKNQNIKTPYNFKSDILSYTLNNGLQIQTYSLICSNKISRCIENLNKNKLLSIGADKINYVAKNIFDFTVWKKI
SIO_010081: BBIDN127_RS06665
subclass of: SO_0000673
so part of: BBIDN127_RS06665
location: 27086..27466
location: region:27086-27466:1
so has part: feature:27086-27466:1:exon

WP_014023182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27086-27466:1:exon

BBIDN127_RS06670
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06670
old locus tag: BbiDN127_AA0040
so part of: sequence
location: 27802..28197
location: region:27802-28197:1
so has part: feature:27802-28197:1:exon
subclass of: SO_0000010

position:27802:1
position: 27802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28197:1
position: 28197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27802-28197:1:exon

BBIDN127_RS06670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06670
old locus tag: BbiDN127_AA0040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIRMKHLVRSLYLRRDKIWHIYRSTEVQNKAKDKSITNFPKLKPEDLDYEYVYKFLDEWIQKKYNAKLGFTIEKVDGLEYICKAKRYSSLKKILARIVRDYKEIFLGRLQKDGSGVAAVPGSGGKRQGGS
SIO_010081: BBIDN127_RS06670
subclass of: SO_0000673
so part of: BBIDN127_RS06670
location: 27802..28197
location: region:27802-28197:1
so has part: feature:27802-28197:1:exon

WP_014023183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27802-28197:1:exon

BBIDN127_RS07685
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07685
old locus tag: BbiDN127_AA0041
so part of: sequence
location: 28354..28758
location: region:28354-28758:1
so has part: feature:28354-28758:1:exon
subclass of: SO_0000010

position:28354:1
position: 28354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28758:1
position: 28758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28354-28758:1:exon

BBIDN127_RS07685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07685
old locus tag: BbiDN127_AA0041
inference: COORDINATES: protein motif:HMM:NF014889.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MFYGIFYGYKRIKGNRFFTDYASVCRFSKKNFKTFNKAYYLEFRFKTGSVFMYVHTISYFVDGRNIRSIRKLYKKILKLEQEVFKFYSKDLQPEGIITKWVAKIKQKREERLDQIGNLINPPPHLRVRSRFRKF
SIO_010081: BBIDN127_RS07685
subclass of: SO_0000673
so part of: BBIDN127_RS07685
location: 28354..28758
location: region:28354-28758:1
so has part: feature:28354-28758:1:exon

WP_014023184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28354-28758:1:exon

BBIDN127_RS06680
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06680
old locus tag: BbiDN127_AA0043
so part of: sequence
location: 28837..29514
location: region:28837-29514:1
so has part: feature:28837-29514:1:exon
subclass of: SO_0000010

position:28837:1
position: 28837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29514:1
position: 29514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28837-29514:1:exon

BBIDN127_RS06680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06680
old locus tag: BbiDN127_AA0043
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256603.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MESVLATNITEEQIYKEFLRLGMEQLIAQDLSKRYYHNELTYRDLENLEKQFGIKFDNLEFKIDTVKNELNTKIDNVEKNLNLKIDNLDVKIDNVEKNLNAKIDGVEKNLQKDMFNLEQRLEAKLEVNNKVLLEKLEVNNKVLLEKLEANNKVLLEKLEANNKVLLEKLEANNKVYSEKLEANNKVYSEKLKVSNRIVIIAVVVVPTAISILTPLITSLISSYFK
SIO_010081: BBIDN127_RS06680
subclass of: SO_0000673
so part of: BBIDN127_RS06680
location: 28837..29514
location: region:28837-29514:1
so has part: feature:28837-29514:1:exon

WP_044055042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28837-29514:1:exon

BBIDN127_RS07770
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07770
old locus tag: BbiDN127_AA0044
so part of: sequence
location: complement(29537..30160)
location: region:29537-30160:-1
so has part: feature:29537-30160:-1:exon
subclass of: SO_0000010

position:29537:-1
position: 29537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30160:-1
position: 30160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29537-30160:-1:exon

BBIDN127_RS07770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07770
old locus tag: BbiDN127_AA0044
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023186.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASGISLAHLKNQNIKTPYNFKSDILSYALDNGLQIETYSLICSNEISRCIENLDKNRLLSIDARRINYVANNIFGFRITAKQLKIIYSLIAKSKETLNEITYNSNSQNFFLVKTPCILNLSQKLNYIKSFAPLKLNQSNLNHYLNSSTGTKLTIINPISNFFTEKEPCKNLYNLKLYINANLKKLGIYKNTNKLQKHIISKIFFLD
SIO_010081: BBIDN127_RS07770
subclass of: SO_0000673
so part of: BBIDN127_RS07770
location: complement(29537..30160)
location: region:29537-30160:-1
so has part: feature:29537-30160:-1:exon

WP_014023186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29537-30160:-1:exon