Borreliella bissettiae DN127 plasmid lp28-4, complete sequence.
Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borreliella.
Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
Submitted (27-JUN-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street, Baltimore, MD 21201, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002759.1.\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu)\nLinear molecule is missing portions of the telomeric-like regions\nat the ends.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:43:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,449\nCDSs (total) :: 1,409\nGenes (coding) :: 1,335\nCDSs (with protein) :: 1,335\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 44 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 30 of 74\nPseudo Genes (multiple problems) :: 23 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Ixodes pacificus (western blackleg tick)
COORDINATES: similar to AA sequence:RefSeq:WP_011703843.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014023072.1
COORDINATES: protein motif:HMM:NF033726.0
COORDINATES: similar to AA sequence:RefSeq:WP_014540421.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540513.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_010256998.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_014023135.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017692.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486433.1
COORDINATES: protein motif:HMM:NF017525.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011703879.1
CRASP family complement regulator-acquiring lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_010256964.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540459.1
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
5'-methylthioadenosine/adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_010256980.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890331.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883904.1
COORDINATES: similar to AA sequence:RefSeq:WP_006434306.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.