Borreliella bissettiae DN127 plasmid lp28-4, complete sequence.
type: Entry
definition: Borreliella bissettiae DN127 plasmid lp28-4, complete sequence.
sequence version: NC_015917.1
sequence date: 2022-12-07
sequence: sequence
division: CON
label: NC_015917.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604204
keyword: RefSeq
source: Borreliella bissettiae DN127
organism: Borreliella bissettiae DN127
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002759.1.\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu)\nLinear molecule is missing portions of the telomeric-like regions\nat the ends.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:43:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,449\nCDSs (total) :: 1,409\nGenes (coding) :: 1,335\nCDSs (with protein) :: 1,335\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 44 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 30 of 74\nPseudo Genes (multiple problems) :: 23 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 27319
topology: linear
so has quality: SO_0000987
location: 1..27319
location: region:1-27319:1
RO_0002162: 521010

NC_015917
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604204
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Mongodin, E.F.
author: Casjens, S.R.
author: Fraser-Liggett, C.M.
author: Qiu, W.-G.
author: Dunn, J.J.
author: Luft, B.J.
author: Schutzer, S.E.
journal: Submitted (27-JUN-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27319:1
position: 27319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27319:1:source
so part of: sequence
organism: Borreliella bissettiae DN127
mol type: genomic DNA
strain: DN127
host: Ixodes pacificus (western blackleg tick)
type material: type strain of Borrelia bissettiae
plasmid: lp28-4
country: USA: California

521010
type: Taxonomy
SIO_000068: taxonomy

BBIDN127_RS06415
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06415
old locus tag: BbiDN127_I0001
so part of: sequence
location: complement(<1..1302)
location: region:1-1302:-1
so has part: feature:1-1302:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1302:-1
position: 1302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1302:-1:exon

BBIDN127_RS06415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06415
old locus tag: BbiDN127_I0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703843.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction endonuclease
translation: MKTNDIVKTNNPNVSLYKQLSKDFIKRENTNKLKDLFILIKNKLSSIDDNSTEANIESLLKSIFEELNYSVEQQKAGQIEGVESRIDILLFENDKDKVDFNNKVKEAKKNNEPIPVENILLIAEIKRPAFSFYTKDKVKEAEDQLYRYLNQYQKHYGILSNGKVWRLYDKSKVLYGEKRYIEFNFSKIEEKEEYKEQEWFVLFIYLIRKERFLKKSNIIEVEKEQINKEKEIIQKTLREILYERPDDSIVFKIAKNIYDKEFKVSGKEITGHILASILEESIIFILRIFFIAYIEDNEIFKKILEENKLYRSSISFRYFFYDENTKKKLGYKKIITIFNLLDKGSDAIKFPIFNGGLFAEDKVKYLNNERLLSISELEEILVKILFFEEKNIKDEKFVEYSRLDPKSFGELYETLLEYDLRIADTTVYRIMKTE
SIO_010081: BBIDN127_RS06415
subclass of: SO_0000673
so part of: BBIDN127_RS06415
location: complement(<1..1302)
location: region:1-1302:-1
so has part: feature:1-1302:-1:exon

WP_014023122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1302:-1:exon

BBIDN127_RS06420
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06420
old locus tag: BbiDN127_I0003
so part of: sequence
location: 2004..2879
location: region:2004-2879:1
so has part: feature:2004-2879:1:exon
subclass of: SO_0000010

position:2004:1
position: 2004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2879:1
position: 2879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2004-2879:1:exon

BBIDN127_RS06420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06420
old locus tag: BbiDN127_I0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023072.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MKKNILATYTLMLLSLSSCDTNAINKLTNKTKEKFVKTPEYTKDLDLIKKIRMDDKESGKQHIKEREQQQVQVVSVESINEKNPEILNSIYYSHQKQIEIKERNLTTNTDEEKEAEKAIIEGAPIFAKLVDNDHELKLKYERLEFNFYNVISKLKKKLENYKRHNNIKRQKIIQLINQFNKKRSDIDELKIKLESGLIEKISAKYFFNQAQKTLKEAIAERSKNKHRNYQSKKTNSNLLAKKALYETTRALDQLATSSIKMAEAMGIKKEIKELIQEAKYILASFKREENK
SIO_010081: BBIDN127_RS06420
subclass of: SO_0000673
so part of: BBIDN127_RS06420
location: 2004..2879
location: region:2004-2879:1
so has part: feature:2004-2879:1:exon

WP_014023124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2004-2879:1:exon

BBIDN127_RS07885
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07885
old locus tag: BbiDN127_I0005
so part of: sequence
location: complement(3411..3497)
location: region:3411-3497:-1
so has part: feature:3411-3497:-1:exon
subclass of: SO_0000010

position:3411:-1
position: 3411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3497:-1
position: 3497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3411-3497:-1:exon

BBIDN127_RS07885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07885
old locus tag: BbiDN127_I0005
inference: COORDINATES: protein motif:HMM:NF033726.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFGKIKDDVNFLNYYIYWIEIILMIGQY
SIO_010081: BBIDN127_RS07885
subclass of: SO_0000673
so part of: BBIDN127_RS07885
location: complement(3411..3497)
location: region:3411-3497:-1
so has part: feature:3411-3497:-1:exon

WP_233421664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3411-3497:-1:exon

BBIDN127_RS06430
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06430
old locus tag: BbiDN127_I0007
so part of: sequence
location: 4116..4976
location: region:4116-4976:1
so has part: feature:4116-4976:1:exon
subclass of: SO_0000010

position:4116:1
position: 4116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4976:1
position: 4976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4116-4976:1:exon

BBIDN127_RS06430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06430
old locus tag: BbiDN127_I0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S2/P23 family protein
translation: MKKDIRILNIFLYIPLFYSCFLTPPKSSKINKIKNPDFDFKKIEEENITKYNKDTIKDSNKNICLSLEEPESNKIKEGEVFEPLAVGYVTWAKSGNLKALKDKNNNLIEDLRELKYSYIFSPIQFKTYSFYSFSFNYGINDNNYKILGQEVPIAKIIAFESTIEFEKKYEIKSLKLNSEESNIDFEQNRTGLAKINLKENSKEPNYIYSYNFGVFDNSLADYFKFFYKKSNCNYMPAYLTIKDKQTDKDKTYEIILNLKLFNDAIKLLFDKYSNLSKEKLKLFIDE
SIO_010081: BBIDN127_RS06430
subclass of: SO_0000673
so part of: BBIDN127_RS06430
location: 4116..4976
location: region:4116-4976:1
so has part: feature:4116-4976:1:exon

WP_014023128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4116-4976:1:exon

BBIDN127_RS06435
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06435
old locus tag: BbiDN127_I0008
so part of: sequence
location: complement(5389..6195)
location: region:5389-6195:-1
so has part: feature:5389-6195:-1:exon
subclass of: SO_0000010

position:5389:-1
position: 5389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6195:-1
position: 6195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5389-6195:-1:exon

BBIDN127_RS06435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06435
old locus tag: BbiDN127_I0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540513.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKYHIYICVFLLLNACNSDFNTNQKDIKYPFDKEKSKFNTEASSKQEGPNREELKPSIESDPKQEEDLNKKIKNTLLNNLRNLIEAANVHKEKYIKRMEEEPADQYGMGFEIRTWGKGQEDASANTERSIRFRRHTYTVLSTIDTKDLKELGNIIKLSGSSKLFSFFSDLGSVFDIVTAHLYSKKDNLDKLDISDLEKLKVAFEKILSTMKIISEILNQLLLDYQDDKNLIKTDVTKLKSYASTLVNQIQEKTEESEGLQKVIELIAL
SIO_010081: BBIDN127_RS06435
subclass of: SO_0000673
so part of: BBIDN127_RS06435
location: complement(5389..6195)
location: region:5389-6195:-1
so has part: feature:5389-6195:-1:exon

WP_014023129.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5389-6195:-1:exon

BBIDN127_RS07890
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07890
so part of: sequence
location: 8538..9248
location: region:8538-9248:1
so has part: feature:8538-9248:1:exon
subclass of: SO_0000010

position:8538:1
position: 8538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9248:1
position: 9248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8538-9248:1:exon

BBIDN127_RS07890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07890
inference: COORDINATES: protein motif:HMM:NF019310.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MIEIKHQRYYFYSLFLSELARTLPHAVLTIILINKGLSLKDIAMVQICYMTAIIIFEFPSGVISDVFDRKIVYLISIFLLMVSYFIVFKTSSFVFMCVSWFIYGMSAAISTGTIDISFTKIYQNNSKKLKAFISFVKIILSIGAILGGYIGSILYLYIDIKIYLISLLIYLVASLITIFFIPRDKNTDHNHSKEDLSLYLIKFKKIVITLLQSKELLELFILIGSIQFFYQPFYLY
SIO_010081: BBIDN127_RS07890
subclass of: SO_0000673
so part of: BBIDN127_RS07890
location: 8538..9248
location: region:8538-9248:1
so has part: feature:8538-9248:1:exon

WP_233421661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8538-9248:1:exon

BBIDN127_RS06445
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06445
old locus tag: BbiDN127_I0015
so part of: sequence
location: complement(10399..10968)
location: region:10399-10968:-1
so has part: feature:10399-10968:-1:exon
subclass of: SO_0000010

position:10399:-1
position: 10399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10968:-1
position: 10968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10399-10968:-1:exon

BBIDN127_RS06445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06445
old locus tag: BbiDN127_I0015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256998.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MNKKNINLKINKRISENNLNYILDQSNENQRKEEFERLITQLKNNIKSEIYNIIDTMKILKKINDKKLYLEGGYKSFKDFLSDFKLAKTQSYEYIKLATAVEEGVLEENFITNNGIRASIRYIKNKANGTMKKSKQNLIKPLKFQLKNQESYAFYKSNSKFASFMMDEIFKNQKDFLNKLLKRYKESRG
SIO_010081: BBIDN127_RS06445
subclass of: SO_0000673
so part of: BBIDN127_RS06445
location: complement(10399..10968)
location: region:10399-10968:-1
so has part: feature:10399-10968:-1:exon

WP_014023134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10399-10968:-1:exon

BBIDN127_RS06450
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06450
old locus tag: BbiDN127_I0016
so part of: sequence
location: complement(11027..11779)
location: region:11027-11779:-1
so has part: feature:11027-11779:-1:exon
subclass of: SO_0000010

position:11027:-1
position: 11027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11779:-1
position: 11779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11027-11779:-1:exon

BBIDN127_RS06450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06450
old locus tag: BbiDN127_I0016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023135.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDRKKSKIITIASLKGGVGKSTTSIILANLLSQKHKVLLVDTDDQAATTSYYYNELETKNFDVSKINIGNVIKNGADINKSIINVDNNIALIPSYITVDELNGEYYYDNRHRSIEFALKAKLNSISDNYDYIIIDTNPKRNFTLKISLISSNYVISPMTAEKWAVEGFETLRRYIKEVAGIPIFIVITRFKKNVTHRQLMEIVSMKSGFLGYISEREDLNKRIGCNEKFDFSKDYIIEYKKILDVFLGKL
SIO_010081: BBIDN127_RS06450
subclass of: SO_0000673
so part of: BBIDN127_RS06450
location: complement(11027..11779)
location: region:11027-11779:-1
so has part: feature:11027-11779:-1:exon

WP_014023135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11027-11779:-1:exon

BBIDN127_RS06455
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06455
old locus tag: BbiDN127_I0017
so part of: sequence
location: complement(11755..12309)
location: region:11755-12309:-1
so has part: feature:11755-12309:-1:exon
subclass of: SO_0000010

position:11755:-1
position: 11755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12309:-1
position: 12309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11755-12309:-1:exon

BBIDN127_RS06455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06455
old locus tag: BbiDN127_I0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014017692.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MKNVLQSIKIEKPRIKCKNKDRFIKIEKENDKTMYHTKIMMDIYKLGIDNKRNECRISLRTLFNQTKVEEVRLYSVKEGDKFLGIHYGYRKPIKNIFVKYEINGNTKSYGLSKAHYIEFRFKKGSVFCYFKGLFRLLKKEKENTPYNVACIDMFTKLEKHVYEFYGKKYPEKGIIIRWIEKNQK
SIO_010081: BBIDN127_RS06455
subclass of: SO_0000673
so part of: BBIDN127_RS06455
location: complement(11755..12309)
location: region:11755-12309:-1
so has part: feature:11755-12309:-1:exon

WP_014023136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11755-12309:-1:exon

BBIDN127_RS06460
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06460
old locus tag: BbiDN127_I0018
so part of: sequence
location: complement(12319..13416)
location: region:12319-13416:-1
so has part: feature:12319-13416:-1:exon
subclass of: SO_0000010

position:12319:-1
position: 12319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13416:-1
position: 13416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12319-13416:-1:exon

BBIDN127_RS06460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06460
old locus tag: BbiDN127_I0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486433.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MQNTFINHKNTPFQNKLQHKLIVFISTLKYINSKYKKYTQNNILYYFNENLKRNGQPTVKLKTMQNYLYKLEKELKVTTNYHKHLGVNFGTEIYYKLNYPKKECHLKINQYFKEKKDIRFQTRVNRHLKDRFTKEGNLNFGECNNNNNNKEEETKNKKIEKYQTKKYFNKCNFLSKEAIYILDLNISKDKIIEILKIVKKIEINLTKKNNKNKVYFKERQNKLKEILKNIQKEFEKNGYDAKQMKLQIESIYKNYKNKPHFIIENKKYEDLNKIKLKLEKSIEIKKETPTKKYIHIRTNIFNILIEQLKKEFEIKSLKSIIKNYLNNKKPLEYNKVFSIYCYELLEIIKKEKNKMDKKLLSQDII
SIO_010081: BBIDN127_RS06460
subclass of: SO_0000673
so part of: BBIDN127_RS06460
location: complement(12319..13416)
location: region:12319-13416:-1
so has part: feature:12319-13416:-1:exon

WP_044055032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12319-13416:-1:exon

BBIDN127_RS06470
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06470
old locus tag: BbiDN127_I0027
so part of: sequence
location: complement(15217..15738)
location: region:15217-15738:-1
so has part: feature:15217-15738:-1:exon
subclass of: SO_0000010

position:15217:-1
position: 15217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15738:-1
position: 15738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15217-15738:-1:exon

BBIDN127_RS06470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06470
old locus tag: BbiDN127_I0027
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MENEPEDQYGVAAFIRLNWGAGTERMSDNTERSIRYRRHTYTVLSPLVPDKLKEFSDIIANINKLAPAINMFNSFSTIGVVLDIIFDRLYPKQDSLEKLDISDLETLKNSFEQLLSIKGGGAGRIVQLLKDYKNLKTDVDKLKSYSNKLVNEIKQLAKEAENLKSLIVSKYNP
SIO_010081: BBIDN127_RS06470
subclass of: SO_0000673
so part of: BBIDN127_RS06470
location: complement(15217..15738)
location: region:15217-15738:-1
so has part: feature:15217-15738:-1:exon

WP_233421662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15217-15738:-1:exon

BBIDN127_RS07760
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07760
so part of: sequence
location: complement(15797..15976)
location: region:15797-15976:-1
so has part: feature:15797-15976:-1:exon
subclass of: SO_0000010

position:15797:-1
position: 15797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15976:-1
position: 15976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15797-15976:-1:exon

BBIDN127_RS07760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHIFILFSACNPNFNTEKKDIKSPPTEKSRPKIEDSKTKTENLKQEEEAELKKTKKYTT
SIO_010081: BBIDN127_RS07760
subclass of: SO_0000673
so part of: BBIDN127_RS07760
location: complement(15797..15976)
location: region:15797-15976:-1
so has part: feature:15797-15976:-1:exon

WP_044055034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15797-15976:-1:exon

BBIDN127_RS06480
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06480
old locus tag: BbiDN127_I0028
so part of: sequence
location: complement(16349..17008)
location: region:16349-17008:-1
so has part: feature:16349-17008:-1:exon
subclass of: SO_0000010

position:16349:-1
position: 16349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17008:-1
position: 17008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16349-17008:-1:exon

BBIDN127_RS06480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06480
old locus tag: BbiDN127_I0028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703879.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRASP family complement regulator-acquiring lipoprotein
translation: MKIILFMCVFSLLSSCNSGHDNKAAIKKHPNKTKSDYINEIKTLISTTKESIDKSEPPLTNPANQKPVNGKNGGKAFEIDSRAFNFINSFLTDDEFDQFEKIFHKPALQLTNKVLNSIAILELNLEQIINHLNSKKDALDKATTLDLKKIKNSLEQLLSIRKFFSTSIKQILLDYQKNKNSIQTEDSKLQEYLSIILNQFNEKNKEAGDLKNTISSRMN
SIO_010081: BBIDN127_RS06480
subclass of: SO_0000673
so part of: BBIDN127_RS06480
location: complement(16349..17008)
location: region:16349-17008:-1
so has part: feature:16349-17008:-1:exon

WP_014023140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16349-17008:-1:exon

BBIDN127_RS06485
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06485
old locus tag: BbiDN127_I0029
so part of: sequence
location: complement(17586..17804)
location: region:17586-17804:-1
so has part: feature:17586-17804:-1:exon
subclass of: SO_0000010

position:17586:-1
position: 17586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17804:-1
position: 17804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17586-17804:-1:exon

BBIDN127_RS06485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06485
old locus tag: BbiDN127_I0029
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256964.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKFPKNHISKINIIKEYKDVTISWDREYSLFKKLHGKNKTLEDWLEYIKKEENQKIKEFANKFIKKRSPKI
SIO_010081: BBIDN127_RS06485
subclass of: SO_0000673
so part of: BBIDN127_RS06485
location: complement(17586..17804)
location: region:17586-17804:-1
so has part: feature:17586-17804:-1:exon

WP_014023141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17586-17804:-1:exon

BBIDN127_RS06490
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06490
old locus tag: BbiDN127_I0031
so part of: sequence
location: complement(18354..19169)
location: region:18354-19169:-1
so has part: feature:18354-19169:-1:exon
subclass of: SO_0000010

position:18354:-1
position: 18354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19169:-1
position: 19169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18354-19169:-1:exon

BBIDN127_RS06490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06490
old locus tag: BbiDN127_I0031
EC number: 3.2.2.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540459.1
GO function: GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 5'-methylthioadenosine/adenosylhomocysteine nucleosidase
translation: MKIKNIANILIFFLSVVLNSWGNESKINAPNENSQSNILIISATKAEIEEINKIIQNKKSIPIEEHKRKKKIAIGKVMNHNIITIATGVGKINTALWTSYIISKYKISHIINAGVASGIYSNKNKFIKIGDVVISTETTSYDFDLHKFGYEIGHVPEHPKKFKANTTLIRKTSKIKINNITSYMGLIITGDQFIDHQNFQEIPEEFENAIAIDMESAAMAQVAHSFKIPFIIIRGISDIVNNENNHDDYKKFLKKASSSSAKIVENLIKLM
SIO_010081: BBIDN127_RS06490
subclass of: SO_0000673
so part of: BBIDN127_RS06490
location: complement(18354..19169)
location: region:18354-19169:-1
so has part: feature:18354-19169:-1:exon

WP_014023143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18354-19169:-1:exon

BBIDN127_RS07655
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07655
pseudo: true
so part of: sequence
location: complement(20044..20821)
location: region:20044-20821:-1
so has part: feature:20044-20821:-1:exon
subclass of: SO_0000010

position:20044:-1
position: 20044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20821:-1
position: 20821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20044-20821:-1:exon

BBIDN127_RS07655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256980.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: CRASP family complement regulator-acquiring lipoprotein
SIO_010081: BBIDN127_RS07655
subclass of: SO_0000673
so part of: BBIDN127_RS07655
location: complement(20044..20821)
location: region:20044-20821:-1
so has part: feature:20044-20821:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20044-20821:-1:exon

BBIDN127_RS07895
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07895
so part of: sequence
location: complement(21787..22017)
location: region:21787-22017:-1
so has part: feature:21787-22017:-1:exon
subclass of: SO_0000010

position:21787:-1
position: 21787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22017:-1
position: 22017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21787-22017:-1:exon

BBIDN127_RS07895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07895
inference: COORDINATES: protein motif:HMM:NF017525.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRASP family complement regulator-acquiring lipoprotein
translation: MEKIKNSLEQLFSIRNFFSTNIKQTLLDHQNNTGSIKTDDSKSESYFNTIFNQFNEKIKEVRNLKKTILAIPIPAL
SIO_010081: BBIDN127_RS07895
subclass of: SO_0000673
so part of: BBIDN127_RS07895
location: complement(21787..22017)
location: region:21787-22017:-1
so has part: feature:21787-22017:-1:exon

WP_044055037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21787-22017:-1:exon

BBIDN127_RS07900
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07900
so part of: sequence
location: complement(22100..22459)
location: region:22100-22459:-1
so has part: feature:22100-22459:-1:exon
subclass of: SO_0000010

position:22100:-1
position: 22100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22459:-1
position: 22459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22100-22459:-1:exon

BBIDN127_RS07900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNKIILCICVFLLLNSCTANHDTETEIKKHVDKTKNEYINETKNLIAATKESIEKRKLQQPEPADQSPVDGKNGEKVFEIYKRAYDFINSFLTDDEFDKFSTIFNKPKLQSPGKVLIV
SIO_010081: BBIDN127_RS07900
subclass of: SO_0000673
so part of: BBIDN127_RS07900
location: complement(22100..22459)
location: region:22100-22459:-1
so has part: feature:22100-22459:-1:exon

WP_233421663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22100-22459:-1:exon

BBIDN127_RS06510
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06510
old locus tag: BbiDN127_I0036
so part of: sequence
location: complement(22990..23835)
location: region:22990-23835:-1
so has part: feature:22990-23835:-1:exon
subclass of: SO_0000010

position:22990:-1
position: 22990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23835:-1
position: 23835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22990-23835:-1:exon

BBIDN127_RS06510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06510
old locus tag: BbiDN127_I0036
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890331.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKYNIIANLFVFLFLACNPDFNTNKKDIGYQSSKKGLKSNKKRLKSNKKGLTPKTKTKPNQEEISNQEASSKKNEEINNQKENTLLDDLRNLIEKAKADKDKYVQKLKEESSNQYGILAFKELFWLDGTSEQLSANTERSKAYRKRTYSILNAIDNDALKNFSDIVMASGQTQGIFNNLNSLGSIFEEIVDFLHPKKDNLEKLEISALKRLKNSLENFLETKKIASEMLYKFLLDYKNNTNRIQTDVNELKSHANTLFNQLTKKIEEAEKLKNDICSTESL
SIO_010081: BBIDN127_RS06510
subclass of: SO_0000673
so part of: BBIDN127_RS06510
location: complement(22990..23835)
location: region:22990-23835:-1
so has part: feature:22990-23835:-1:exon

WP_014023146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22990-23835:-1:exon

BBIDN127_RS06515
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06515
old locus tag: BbiDN127_I0037
so part of: sequence
location: 24258..24800
location: region:24258-24800:1
so has part: feature:24258-24800:1:exon
subclass of: SO_0000010

position:24258:1
position: 24258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24800:1
position: 24800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24258-24800:1:exon

BBIDN127_RS06515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06515
old locus tag: BbiDN127_I0037
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883904.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P52 family lipoprotein
translation: MKAFFRMYIIILALILLGCYLPDKQEQAVKTFFDNFNDLEDCGMRADDIITEGKFSNLKLYASEHRLLDDIEKTLYNLKYGSYPEIPPLPDYNEEYFDKFFLDLGSERSRELIRLFGRVKNDHNNKFKSEVYFLYSCIRELYSSDIKYSGEDSYEYIVFMPRPTIDQQYFKLKKEIERVF
SIO_010081: BBIDN127_RS06515
subclass of: SO_0000673
so part of: BBIDN127_RS06515
location: 24258..24800
location: region:24258-24800:1
so has part: feature:24258-24800:1:exon

WP_014023147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24258-24800:1:exon

BBIDN127_RS06520
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06520
pseudo: true
so part of: sequence
location: 26005..26421
location: region:26005-26421:1
so has part: feature:26005-26421:1:exon
subclass of: SO_0000010

position:26005:1
position: 26005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26421:1
position: 26421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26005-26421:1:exon

BBIDN127_RS06520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006434306.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Bdr family repetitive protein
SIO_010081: BBIDN127_RS06520
subclass of: SO_0000673
so part of: BBIDN127_RS06520
location: 26005..26421
location: region:26005-26421:1
so has part: feature:26005-26421:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26005-26421:1:exon

BBIDN127_RS07905
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07905
old locus tag: BbiDN127_I0041
so part of: sequence
location: complement(26773..27066)
location: region:26773-27066:-1
so has part: feature:26773-27066:-1:exon
subclass of: SO_0000010

position:26773:-1
position: 26773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27066:-1
position: 27066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26773-27066:-1:exon

BBIDN127_RS07905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07905
old locus tag: BbiDN127_I0041
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAGIPLAHLKNQNIKTPYNFQSNTISYTLDSGLQIQKHYLICSNKISRCIENLDKNRLISINTTKINYVAKKIFGFVFTTKQLRIVCSLIAKSKKH
SIO_010081: BBIDN127_RS07905
subclass of: SO_0000673
so part of: BBIDN127_RS07905
location: complement(26773..27066)
location: region:26773-27066:-1
so has part: feature:26773-27066:-1:exon

WP_014023151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26773-27066:-1:exon