Borreliella bissettiae DN127 plasmid lp28-3, complete sequence.
Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borreliella.
Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
Submitted (27-JUN-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street, Baltimore, MD 21201, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002758.1.\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu)\nLinear molecule is missing portions of the telomeric-like regions\nat the ends.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:43:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,449\nCDSs (total) :: 1,409\nGenes (coding) :: 1,335\nCDSs (with protein) :: 1,335\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 44 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 30 of 74\nPseudo Genes (multiple problems) :: 23 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Ixodes pacificus (western blackleg tick)
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011703839.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF033725.0
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_011703842.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703843.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF033732.0
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014023152.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890347.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890310.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703849.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703850.1
COORDINATES: protein motif:HMM:NF040499.1
COORDINATES: protein motif:HMM:NF017444.2
COORDINATES: similar to AA sequence:RefSeq:WP_011703761.1
COORDINATES: protein motif:HMM:NF017132.2
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007504319.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890313.1
COORDINATES: similar to AA sequence:RefSeq:WP_012614941.1