Borreliella bissettiae DN127 plasmid lp28-3, complete sequence.
type: Entry
definition: Borreliella bissettiae DN127 plasmid lp28-3, complete sequence.
sequence version: NC_015916.1
sequence date: 2022-12-07
sequence: sequence
division: CON
label: NC_015916.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604204
keyword: RefSeq
source: Borreliella bissettiae DN127
organism: Borreliella bissettiae DN127
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002758.1.\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu)\nLinear molecule is missing portions of the telomeric-like regions\nat the ends.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:43:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,449\nCDSs (total) :: 1,409\nGenes (coding) :: 1,335\nCDSs (with protein) :: 1,335\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 44 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 30 of 74\nPseudo Genes (multiple problems) :: 23 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24945
topology: linear
so has quality: SO_0000987
location: 1..24945
location: region:1-24945:1
RO_0002162: 521010

NC_015916
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604204
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Mongodin, E.F.
author: Casjens, S.R.
author: Fraser-Liggett, C.M.
author: Qiu, W.-G.
author: Dunn, J.J.
author: Luft, B.J.
author: Schutzer, S.E.
journal: Submitted (27-JUN-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24945:1
position: 24945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24945:1:source
so part of: sequence
organism: Borreliella bissettiae DN127
mol type: genomic DNA
strain: DN127
host: Ixodes pacificus (western blackleg tick)
type material: type strain of Borrelia bissettiae
plasmid: lp28-3
country: USA: California

521010
type: Taxonomy
SIO_000068: taxonomy

BBIDN127_RS06325
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06325
old locus tag: BbiDN127_H0001
so part of: sequence
location: complement(243..488)
location: region:243-488:-1
so has part: feature:243-488:-1:exon
subclass of: SO_0000010

position:243:-1
position: 243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:488:-1
position: 488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243-488:-1:exon

BBIDN127_RS06325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06325
old locus tag: BbiDN127_H0001
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLFDNVQNKANLIELTYRNKNLAYVDDIAKEVDMIFKMGDFFKNSCIEIGFRGLDGVIQGFGQCRIFIIIGARLSLLLRPT
SIO_010081: BBIDN127_RS06325
subclass of: SO_0000673
so part of: BBIDN127_RS06325
location: complement(243..488)
location: region:243-488:-1
so has part: feature:243-488:-1:exon

WP_014023098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:243-488:-1:exon

BBIDN127_RS06330
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06330
old locus tag: BbiDN127_H0002
so part of: sequence
location: 1286..2110
location: region:1286-2110:1
so has part: feature:1286-2110:1:exon
subclass of: SO_0000010

position:1286:1
position: 1286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2110:1
position: 2110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1286-2110:1:exon

BBIDN127_RS06330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06330
old locus tag: BbiDN127_H0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703839.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKYNIIVSIFVFLFLNACNPNFNTNQKDMRDQSSKKELKSNKEGLKTKTAVNLNQEANPNQEEAPNKRIKNTPIEDLRNLIETANIDREKYVKKLEEEPLDQYGILAFKKLVWVGNLSGEKIADNSEKSKRYRKCIYATLNAIDTNKLKELSEIIILSEQTQSLFNIFNGFGSAIDDVIVYLYSKKNTIDKLDTLDLEKLKNSFEKLLSTKTIVSEMLNQLLLDYQNNKNLIKTNSTKLKSHVIELYKELIKKREESEKIKSDIFSIHTLKIIY
SIO_010081: BBIDN127_RS06330
subclass of: SO_0000673
so part of: BBIDN127_RS06330
location: 1286..2110
location: region:1286-2110:1
so has part: feature:1286-2110:1:exon

WP_014023099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1286-2110:1:exon

BBIDN127_RS07865
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07865
old locus tag: BbiDN127_H0004
so part of: sequence
location: 4001..4294
location: region:4001-4294:1
so has part: feature:4001-4294:1:exon
subclass of: SO_0000010

position:4001:1
position: 4001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4294:1
position: 4294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4001-4294:1:exon

BBIDN127_RS07865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07865
old locus tag: BbiDN127_H0004
inference: COORDINATES: protein motif:HMM:NF019310.2
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MAAIIIFEFPSGIISDIFDRKIVYLTSIFLLMISYFIIFKASSFMLLCISWFIYGMSAAINTGTIDISFTKINQNNSKKLKTFISFVKMIISTIKKI
SIO_010081: BBIDN127_RS07865
subclass of: SO_0000673
so part of: BBIDN127_RS07865
location: 4001..4294
location: region:4001-4294:1
so has part: feature:4001-4294:1:exon

WP_014023101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4001-4294:1:exon

BBIDN127_RS07620
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07620
so part of: sequence
location: complement(6017..6181)
location: region:6017-6181:-1
so has part: feature:6017-6181:-1:exon
subclass of: SO_0000010

position:6017:-1
position: 6017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6181:-1
position: 6181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6017-6181:-1:exon

BBIDN127_RS07620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07620
inference: COORDINATES: protein motif:HMM:NF033725.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MNNKVKEKDLYKYDGFKSFEQFIKSFVVVKTQAYMYLKVYEKVLKSAVFIDNIK
SIO_010081: BBIDN127_RS07620
subclass of: SO_0000673
so part of: BBIDN127_RS07620
location: complement(6017..6181)
location: region:6017-6181:-1
so has part: feature:6017-6181:-1:exon

WP_233421659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6017-6181:-1:exon

BBIDN127_RS06340
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06340
old locus tag: BbiDN127_H0006
so part of: sequence
location: 6636..7526
location: region:6636-7526:1
so has part: feature:6636-7526:1:exon
subclass of: SO_0000010

position:6636:1
position: 6636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7526:1
position: 7526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6636-7526:1:exon

BBIDN127_RS06340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06340
old locus tag: BbiDN127_H0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703842.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S2/P23 family protein
translation: MKKSISILNIFFFISFFYSCVVESNSLKNIKTEGLDFELSEENNEEDIKEDNEEDIKNISCINEEFGSSEIKEGEVWGGLFTGSVTWIKPNNLRAIKDRYNNLIEDLKGLKYSYIFSPIRLKTFSWSLFSGDTYHINDDNYKIMGIKVPIAKIIAFESTKEFEKRYEVKNLKLIFEGVNFDFEKYRTDGFAKITLKEVSREAGYINSYNFGVFNDALTDFFTLFIKKSKCSYMLAYLTIKDRQASKDKTHEIVLDLKLFNDVVKLIFAKYPDLSKEKLKLPIDLMNNKYPSEIFNK
SIO_010081: BBIDN127_RS06340
subclass of: SO_0000673
so part of: BBIDN127_RS06340
location: 6636..7526
location: region:6636-7526:1
so has part: feature:6636-7526:1:exon

WP_044055025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6636-7526:1:exon

BBIDN127_RS07625
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07625
old locus tag: BbiDN127_H0007
so part of: sequence
location: complement(8189..12052)
location: region:8189-12052:-1
so has part: feature:8189-12052:-1:exon
subclass of: SO_0000010

position:8189:-1
position: 8189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12052:-1
position: 12052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8189-12052:-1:exon

BBIDN127_RS07625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07625
old locus tag: BbiDN127_H0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703843.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
translation: MKNNNIIKTNDPNISLYKELSKDFIKKENINKLKDFFILIKNKLSSIDDNSTEANIESLLRSIFEKLNYSVEQQKVGQIEGVDSRVDILLFENDKDRVDFNNKLEEAKKNNEPILAEDILLIVEVKRPSFSFDTKNKIKEAEDQLYRYLNQYQKHYGILSSGKIWRLYDKSKVLYGEKRYIEFNFSKIKEKEEYKEQEWFILFIYLIRKTRYLKTSNVIEIEKEQISKEKEIIQKTLREMLYERPDDSIVFKIAKNIYDKEFKVSGKEITQHILASILEESIIFILRIFFIAYIEDNDIFKKILKENKLYRSSISFRYFFYDKNTKKKLGYKKIITIFNLLDKGSDVIKFPVFNGGLFSEDKVKYLNNEGLLSISELEEILIKILFFEEKNIKDEKFVEYSKLDPKSFGELYETLLEYDLRIADTTVHRIVEDGAYLIRTEEELANKQANKVATYYKGNIYLTSRSLDRKKSGAYYTPDDLTDFMVTSSIEEQLKTKSPLDIKIIDNSCGSGHFLISCLEYLTEKVWYELDKFEDVKKELDKEYRVLIKESEEYDVQDSISKELVLKRMLLKKCIYGVDINPISVEITMLSLWINTFIFGTPLSFIEHHIKVGNALLGYAKDEFFNIVKKKFESGFSLFKKRIKEITVILEDIYQKIKGINDTTKEDIEKSKKIYKKYEESKDIDNLRIIFSLIKLYSLSFDKSLNMKFSDIASVISLIENILGNKTSSKDKEKIEKIRKLSSYCKFFHYGIEFPDIQEGFDIVIGNPPWEKTKFNETEFFSKHIPNYRKLGIKEQNKIKQEILSKDNHPLSIEYNEEKNSIIAINNIYKFDFKDFTSGGDPNLFRYFVTFNLKLMKEKGNLTYLVPSAIWNESSSRILRKHIFAHYKLNYIYQFENKKRFKDVDSRFKFVIFQLSNIKESTSSFKAKFMIQSSDNILKEITRDLRDSKDDAYKGVELNINQIKKLSPIQESIIEFKDNEEFTLINKMFSKFSTLGEGYVDFKKGLDPSIKNRKSLLKEYNNRNLIFLYSGANIHQFNSRFFEDKDAKESSKLLWIDKEDLKKVLTKDNQYQTERVFYRAIASNTNERTMISTLSPGNCYCVNSMYINYEKTPISLYKKLFIISIFNSFVFDFLLRRFVDSNVLKSCLYQCPMPQPEEKEILSNPLYLNLAKNTSLLIAKNDPENFKYLLYLEYFEFDKEKVNKILNLNAEDEFFKEKESENNFIVARLYSLTKEDFRILLNDFEVLKNKKGEVYISSLIKGYENYLRINKLNNSSLVNCYKEILFT
SIO_010081: BBIDN127_RS07625
subclass of: SO_0000673
so part of: BBIDN127_RS07625
location: complement(8189..12052)
location: region:8189-12052:-1
so has part: feature:8189-12052:-1:exon

WP_014023104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8189-12052:-1:exon

BBIDN127_RS06350
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: eppA
locus tag: BBIDN127_RS06350
old locus tag: BbiDN127_H0008
pseudo: true
so part of: sequence
location: complement(12126..>12440)
location: region:12126-12440:-1
so has part: feature:12126-12440:-1:exon
subclass of: SO_0000010

position:12126:-1
position: 12126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12440:-1
position: 12440
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12126-12440:-1:exon

BBIDN127_RS06350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: eppA
locus tag: BBIDN127_RS06350
old locus tag: BbiDN127_H0008
inference: COORDINATES: protein motif:HMM:NF033732.0
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: exported protein A EppA
SIO_010081: BBIDN127_RS06350
subclass of: SO_0000673
so part of: BBIDN127_RS06350
location: complement(12126..>12440)
location: region:12126-12440:-1
so has part: feature:12126-12440:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12126-12440:-1:exon

BBIDN127_RS07870
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07870
pseudo: true
so part of: sequence
location: <12733..13181
location: region:12733-13181:1
so has part: feature:12733-13181:1:exon
subclass of: SO_0000010

position:12733:1
position: 12733
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:13181:1
position: 13181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12733-13181:1:exon

BBIDN127_RS07870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023152.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: BBIDN127_RS07870
subclass of: SO_0000673
so part of: BBIDN127_RS07870
location: <12733..13181
location: region:12733-13181:1
so has part: feature:12733-13181:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12733-13181:1:exon

BBIDN127_RS06355
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06355
old locus tag: BbiDN127_H0009
so part of: sequence
location: 13370..14287
location: region:13370-14287:1
so has part: feature:13370-14287:1:exon
subclass of: SO_0000010

position:13370:1
position: 13370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14287:1
position: 14287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13370-14287:1:exon

BBIDN127_RS06355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06355
old locus tag: BbiDN127_H0009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890347.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKSVISNHKHQTYKNKLLSKICRLKKIISVIIYLNKEFEKKYSTSINKEHFTSEKVKELGVHHQGDILRVLNSNICKENKKETTINTLRPDLRFLVKLKALEKKILTFSNNFGEFKGKLCIYKVSPIAHKLIDAYFSSTKADLIKKVKEEKDVFKKEKGYFEPQNITENITVYNKLYINIYNKNSIESSLFKRIKSIASNTKNPIATLKNALLNYKDFKNYLKYDYVVEDIKEFFLSKLNLYKDKIHFMRKTAPYKTDFYILAGEFKDVYTTKWKKNKKTSFSGHAGIIANNILANILTKGLKFE
SIO_010081: BBIDN127_RS06355
subclass of: SO_0000673
so part of: BBIDN127_RS06355
location: 13370..14287
location: region:13370-14287:1
so has part: feature:13370-14287:1:exon

WP_014023106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13370-14287:1:exon

BBIDN127_RS06360
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06360
old locus tag: BbiDN127_H0010
so part of: sequence
location: 14280..14840
location: region:14280-14840:1
so has part: feature:14280-14840:1:exon
subclass of: SO_0000010

position:14280:1
position: 14280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14840:1
position: 14840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14280-14840:1:exon

BBIDN127_RS06360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06360
old locus tag: BbiDN127_H0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MSRLLEKLKQKKASIKISDILIKKDAFSKIEEIDGKKTYYTKIFKHLIDFRVTNKEQRFRLVFQKFNNKDYYFFNLFALEKNDKFLGIKYGWDRLEKPLFLKKEDNKIYAIKKLYHIEFRFKKGSIKSYILSLRTLLRKKEKETTEYYQFTLNHLEKMESKVYKFYNKKLPDGGILKKWVLKNQIL
SIO_010081: BBIDN127_RS06360
subclass of: SO_0000673
so part of: BBIDN127_RS06360
location: 14280..14840
location: region:14280-14840:1
so has part: feature:14280-14840:1:exon

WP_014023107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14280-14840:1:exon

BBIDN127_RS06365
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06365
old locus tag: BbiDN127_H0011
so part of: sequence
location: 14813..15568
location: region:14813-15568:1
so has part: feature:14813-15568:1:exon
subclass of: SO_0000010

position:14813:1
position: 14813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15568:1
position: 15568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14813-15568:1:exon

BBIDN127_RS06365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06365
old locus tag: BbiDN127_H0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703849.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MGIKKSDIITMASIKGGVGKSVLSILFSYVLKELGKKVLLIDLDPQNSLTSYFNRYISNIEKYNVYSMLKGDFHFNECIYKINDYISIIPSHPILGKFNSEAIDYKEIILEHHLNENIQNYNFDYVLLDTPPSLDFLLKNALNVANYIVIPVQVEIWSIESFTILINAVNDITRFRKKIYNISIVENQFIKNRNTIKEVEDLLYKEYREYIKGKVHFSNSIKVLINGRLEPSAKEMYHKEIKDTLKNIFSL
SIO_010081: BBIDN127_RS06365
subclass of: SO_0000673
so part of: BBIDN127_RS06365
location: 14813..15568
location: region:14813-15568:1
so has part: feature:14813-15568:1:exon

WP_014023108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14813-15568:1:exon

BBIDN127_RS06370
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06370
old locus tag: BbiDN127_H0012
so part of: sequence
location: 15664..16284
location: region:15664-16284:1
so has part: feature:15664-16284:1:exon
subclass of: SO_0000010

position:15664:1
position: 15664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16284:1
position: 16284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15664-16284:1:exon

BBIDN127_RS06370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06370
old locus tag: BbiDN127_H0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703850.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MGKKENKKQVTLYKRVEISTGEELNLDNNQDEELRNYNELKEQLKLNLKSDINNKIQRMKILYEIKQKELYKYDGFKSFKQFIKSYVIARSQAYMYLKIYEKVLEGAISIEKVKEMGFVATYKDILKNNSSYAYKGDMIKENVEEGDDNPNIPIRILMKDKEVYDFCKKDTKRIYFILERLIKDKKNILSDLMIDYENHRKDKRKN
SIO_010081: BBIDN127_RS06370
subclass of: SO_0000673
so part of: BBIDN127_RS06370
location: 15664..16284
location: region:15664-16284:1
so has part: feature:15664-16284:1:exon

WP_014023109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15664-16284:1:exon

BBIDN127_RS06375
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06375
old locus tag: BbiDN127_H0014
so part of: sequence
location: 16466..16771
location: region:16466-16771:1
so has part: feature:16466-16771:1:exon
subclass of: SO_0000010

position:16466:1
position: 16466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16771:1
position: 16771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16466-16771:1:exon

BBIDN127_RS06375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06375
old locus tag: BbiDN127_H0014
inference: COORDINATES: protein motif:HMM:NF040499.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MNENDLYNELVRLGMNKILASDLATRFYHNEITIKDSEIVKLELQGFVRDEISIVKGEIKSLKTEFDSKLKLNNWMIGIALASQGAIGILVSLFFYVLNKL
SIO_010081: BBIDN127_RS06375
subclass of: SO_0000673
so part of: BBIDN127_RS06375
location: 16466..16771
location: region:16466-16771:1
so has part: feature:16466-16771:1:exon

WP_014023111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16466-16771:1:exon

BBIDN127_RS07875
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07875
so part of: sequence
location: complement(17507..17746)
location: region:17507-17746:-1
so has part: feature:17507-17746:-1:exon
subclass of: SO_0000010

position:17507:-1
position: 17507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17746:-1
position: 17746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17507-17746:-1:exon

BBIDN127_RS07875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07875
inference: COORDINATES: protein motif:HMM:NF017444.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P13 family porin
translation: MTQCLILGYWKGILWLTGNIIGNTAQNATTITRIHTNRDRSGVDTIAASHITSLIIPFKSVNKYNENLKKRLGIDLAGF
SIO_010081: BBIDN127_RS07875
subclass of: SO_0000673
so part of: BBIDN127_RS07875
location: complement(17507..17746)
location: region:17507-17746:-1
so has part: feature:17507-17746:-1:exon

WP_081462140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17507-17746:-1:exon

BBIDN127_RS06385
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06385
old locus tag: BbiDN127_H0017
so part of: sequence
location: 18909..19469
location: region:18909-19469:1
so has part: feature:18909-19469:1:exon
subclass of: SO_0000010

position:18909:1
position: 18909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19469:1
position: 19469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18909-19469:1:exon

BBIDN127_RS06385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06385
old locus tag: BbiDN127_H0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703761.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P52 family lipoprotein
translation: MGILVGICIITLALLGCYLPDKQEQAVQTFFEIENLEMESYDKEPDEIITEGVFSNLRLYAAEHRLLVDIKKTLISLKDPNYRDVPPVPDYNEVYFNKFFLDLGSERSKELIKLFGKLKNEQNNKFKYEVYWLYSCIRALYSPDIKYSGEGGNEYFYNGREVFMPRPTIDEQYFKVKKGIEQYALR
SIO_010081: BBIDN127_RS06385
subclass of: SO_0000673
so part of: BBIDN127_RS06385
location: 18909..19469
location: region:18909-19469:1
so has part: feature:18909-19469:1:exon

WP_014023114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18909-19469:1:exon

BBIDN127_RS07635
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07635
so part of: sequence
location: complement(19904..20347)
location: region:19904-20347:-1
so has part: feature:19904-20347:-1:exon
subclass of: SO_0000010

position:19904:-1
position: 19904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20347:-1
position: 20347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19904-20347:-1:exon

BBIDN127_RS07635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07635
inference: COORDINATES: protein motif:HMM:NF017132.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BlyB family putative holin accessory protein
translation: MVNSIKYKSENKPETINEKSKTLFKDNLELGLTSISNLINVFSESKNEFGEVAHKGFSLVYDLYSYYTSIYKSNMERLESALTPTTITKKLDPLNEKINKVIDLVNSDDKNLKIHNGLKFDESGTPIYKNQEISKIKNLTSSMYNIN
SIO_010081: BBIDN127_RS07635
subclass of: SO_0000673
so part of: BBIDN127_RS07635
location: complement(19904..20347)
location: region:19904-20347:-1
so has part: feature:19904-20347:-1:exon

WP_233421660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19904-20347:-1:exon

BBIDN127_RS07880
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07880
pseudo: true
so part of: sequence
location: complement(<20336..20599)
location: region:20336-20599:-1
so has part: feature:20336-20599:-1:exon
subclass of: SO_0000010

position:20336:-1
position: 20336
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:20599:-1
position: 20599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20336-20599:-1:exon

BBIDN127_RS07880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: BlyB family putative holin accessory protein
SIO_010081: BBIDN127_RS07880
subclass of: SO_0000673
so part of: BBIDN127_RS07880
location: complement(<20336..20599)
location: region:20336-20599:-1
so has part: feature:20336-20599:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20336-20599:-1:exon

BBIDN127_RS07730
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07730
old locus tag: BbiDN127_H0021
so part of: sequence
location: 21445..21594
location: region:21445-21594:1
so has part: feature:21445-21594:1:exon
subclass of: SO_0000010

position:21445:1
position: 21445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21594:1
position: 21594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21445-21594:1:exon

BBIDN127_RS07730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07730
old locus tag: BbiDN127_H0021
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKKNKKKLFLNDRIEHNIIGNLYNLDTNIDKNLTKNNKEFPTYNFYEI
SIO_010081: BBIDN127_RS07730
subclass of: SO_0000673
so part of: BBIDN127_RS07730
location: 21445..21594
location: region:21445-21594:1
so has part: feature:21445-21594:1:exon

WP_014023118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21445-21594:1:exon

BBIDN127_RS07340
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: tnpA
locus tag: BBIDN127_RS07340
pseudo: true
so part of: sequence
location: complement(21610..21981)
location: region:21610-21981:-1
so has part: feature:21610-21981:-1:exon
subclass of: SO_0000010

position:21610:-1
position: 21610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21981:-1
position: 21981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21610-21981:-1:exon

BBIDN127_RS07340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: tnpA
locus tag: BBIDN127_RS07340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007504319.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
SIO_010081: BBIDN127_RS07340
subclass of: SO_0000673
so part of: BBIDN127_RS07340
location: complement(21610..21981)
location: region:21610-21981:-1
so has part: feature:21610-21981:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21610-21981:-1:exon

BBIDN127_RS07645
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07645
old locus tag: BbiDN127_H0024
pseudo: true
so part of: sequence
location: 22053..23186
location: region:22053-23186:1
so has part: feature:22053-23186:1:exon
subclass of: SO_0000010

position:22053:1
position: 22053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23186:1
position: 23186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22053-23186:1:exon

BBIDN127_RS07645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07645
old locus tag: BbiDN127_H0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023152.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: RNA-guided endonuclease TnpB family protein
SIO_010081: BBIDN127_RS07645
subclass of: SO_0000673
so part of: BBIDN127_RS07645
location: 22053..23186
location: region:22053-23186:1
so has part: feature:22053-23186:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22053-23186:1:exon

BBIDN127_RS06405
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: cspZ
locus tag: BBIDN127_RS06405
old locus tag: BbiDN127_H0025
so part of: sequence
location: 23385..24092
location: region:23385-24092:1
so has part: feature:23385-24092:1:exon
subclass of: SO_0000010

position:23385:1
position: 23385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24092:1
position: 24092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23385-24092:1:exon

BBIDN127_RS06405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: cspZ
locus tag: BBIDN127_RS06405
old locus tag: BbiDN127_H0025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890313.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: factor H-binding protein CspZ
translation: MKKIFLSIYMLISISLLSCDVSRLNQRNIDELKIFVEKAKYYSIKLDTIYNEYTGAYNDIMTYSEVTYSDQSKVNQAISILKKDNKIVNKFKELEKIIEEYKPMFLSKLIDDFAIELDQAVDNVSNARHAADSYKKLRKSVVLAYIESFDVISSKFVDSKFVEASKKFVNKAKEFVEENDLIALECIVKTIGDMVNDREINSRSRYDNYYKKEADFLGAAVELEGAYKAIKQTLL
SIO_010081: BBIDN127_RS06405
subclass of: SO_0000673
so part of: BBIDN127_RS06405
location: 23385..24092
location: region:23385-24092:1
so has part: feature:23385-24092:1:exon

WP_044055026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23385-24092:1:exon

BBIDN127_RS06410
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06410
old locus tag: BbiDN127_H0026
so part of: sequence
location: complement(24392..>24945)
location: region:24392-24945:-1
so has part: feature:24392-24945:-1:exon
subclass of: SO_0000010

position:24392:-1
position: 24392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24945:-1
position: 24945
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24392-24945:-1:exon

BBIDN127_RS06410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06410
old locus tag: BbiDN127_H0026
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012614941.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 3
transl table: 11
product: P12 family lipoprotein
translation: ADEAIKHLEENFLKNSKFSELIREVRVLKDEYALIKADLYDVFEKIHNKKTPLMENYKNNRDKINKLTQLQNNLNIHTELEQLINMIDIAENEISSAAFLFENAQKRLKESIIKRLESKNYRTSYGLKLSREATSGARSALNDARSALNNLESSALKKLEPMGRKKEIKELIKHAKTVLEGFN
SIO_010081: BBIDN127_RS06410
subclass of: SO_0000673
so part of: BBIDN127_RS06410
location: complement(24392..>24945)
location: region:24392-24945:-1
so has part: feature:24392-24945:-1:exon

WP_014023121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24392-24945:-1:exon