Borreliella bissettiae DN127 plasmid lp17, complete sequence.
type: Entry
definition: Borreliella bissettiae DN127 plasmid lp17, complete sequence.
sequence version: NC_015915.1
sequence date: 2022-12-07
sequence: sequence
division: CON
label: NC_015915.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604204
keyword: RefSeq
source: Borreliella bissettiae DN127
organism: Borreliella bissettiae DN127
taxonomy: Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borreliella.
reference: 1
references: 22207749
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002756.1.\nThe DNA or cells for this strains can be obtained from Sherwood\nCasjens (Univ. of Utah, sherwood.casjens@path.utah.edu).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 16:43:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,449\nCDSs (total) :: 1,409\nGenes (coding) :: 1,335\nCDSs (with protein) :: 1,335\nGenes (RNA) :: 40\nrRNAs :: 2, 1, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 2 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 44 of 74\nPseudo Genes (incomplete) :: 27 of 74\nPseudo Genes (internal stop) :: 30 of 74\nPseudo Genes (multiple problems) :: 23 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 27137
topology: linear
so has quality: SO_0000987
location: 1..27137
location: region:1-27137:1
RO_0002162: 521010

NC_015915
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604204
type: BioSample
SIO_000068: biosample

1
title: Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii
author: Schutzer, S.E.
author: Fraser-Liggett, C.M.
author: Qiu, W.G.
author: Kraiczy, P.
author: Mongodin, E.F.
author: Dunn, J.J.
author: Luft, B.J.
author: Casjens, S.R.
journal: J Bacteriol
volume: 194
issue: 2
pages: 545-546
year: 2012
pubmed: 22207749

22207749
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Mongodin, E.F.
author: Casjens, S.R.
author: Fraser-Liggett, C.M.
author: Qiu, W.-G.
author: Dunn, J.J.
author: Luft, B.J.
author: Schutzer, S.E.
journal: Submitted (27-JUN-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27137:1
position: 27137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27137:1:source
so part of: sequence
organism: Borreliella bissettiae DN127
mol type: genomic DNA
strain: DN127
host: Ixodes pacificus (western blackleg tick)
type material: type strain of Borrelia bissettiae
plasmid: lp17
country: USA: California

521010
type: Taxonomy
SIO_000068: taxonomy

BBIDN127_RS06120
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06120
old locus tag: BbiDN127_D0002
so part of: sequence
location: complement(1128..1610)
location: region:1128-1610:-1
so has part: feature:1128-1610:-1:exon
subclass of: SO_0000010

position:1128:-1
position: 1128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1610:-1
position: 1610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1128-1610:-1:exon

BBIDN127_RS06120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06120
old locus tag: BbiDN127_D0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002657151.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P52 family lipoprotein
translation: MKNIFVYLELNAVEICVLKDIKSVICKFYEPIVDLENDVETISLLSPHQSRDILNEFFFSLGPKKSKELINLFRKIKVKFGANVFENEVFIFYLCIDDVNFFKLLYVLDRNNFDDCDRDNFDDCDRDNFDDFSISIYEKFRLVKKNLKLRLGNYHVYESL
SIO_010081: BBIDN127_RS06120
subclass of: SO_0000673
so part of: BBIDN127_RS06120
location: complement(1128..1610)
location: region:1128-1610:-1
so has part: feature:1128-1610:-1:exon

WP_014023066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1128-1610:-1:exon

BBIDN127_RS06125
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06125
old locus tag: BbiDN127_D0003
pseudo: true
so part of: sequence
location: 2335..>2559
location: region:2335-2559:1
so has part: feature:2335-2559:1:exon
subclass of: SO_0000010

position:2335:1
position: 2335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2559:1
position: 2559
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2335-2559:1:exon

BBIDN127_RS06125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06125
old locus tag: BbiDN127_D0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257996.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid maintenance protein
SIO_010081: BBIDN127_RS06125
subclass of: SO_0000673
so part of: BBIDN127_RS06125
location: 2335..>2559
location: region:2335-2559:1
so has part: feature:2335-2559:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2335-2559:1:exon

BBIDN127_RS06130
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06130
old locus tag: BbiDN127_D0004
pseudo: true
so part of: sequence
location: complement(2584..3542)
location: region:2584-3542:-1
so has part: feature:2584-3542:-1:exon
subclass of: SO_0000010

position:2584:-1
position: 2584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3542:-1
position: 3542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2584-3542:-1:exon

BBIDN127_RS06130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06130
old locus tag: BbiDN127_D0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540421.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S2/P23 family protein
SIO_010081: BBIDN127_RS06130
subclass of: SO_0000673
so part of: BBIDN127_RS06130
location: complement(2584..3542)
location: region:2584-3542:-1
so has part: feature:2584-3542:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2584-3542:-1:exon

BBIDN127_RS06135
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06135
old locus tag: BbiDN127_D0006
so part of: sequence
location: 3843..4127
location: region:3843-4127:1
so has part: feature:3843-4127:1:exon
subclass of: SO_0000010

position:3843:1
position: 3843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4127:1
position: 4127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3843-4127:1:exon

BBIDN127_RS06135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06135
old locus tag: BbiDN127_D0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023068.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NINE protein
translation: MSKAVDEIYCHSCGKTIKKDAEICISCGVRNKQTENYNKLVVFLLCLFLGYLGVHRFYVGKIGTGMLYLFTFGFLYVGALIDLIRIATNKFECK
SIO_010081: BBIDN127_RS06135
subclass of: SO_0000673
so part of: BBIDN127_RS06135
location: 3843..4127
location: region:3843-4127:1
so has part: feature:3843-4127:1:exon

WP_014023068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3843-4127:1:exon

BBIDN127_RS07275
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07275
pseudo: true
so part of: sequence
location: <4247..>4544
location: region:4247-4544:1
so has part: feature:4247-4544:1:exon
subclass of: SO_0000010

position:4247:1
position: 4247
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4544:1
position: 4544
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4247-4544:1:exon

BBIDN127_RS07275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010883899.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid maintenance protein
SIO_010081: BBIDN127_RS07275
subclass of: SO_0000673
so part of: BBIDN127_RS07275
location: <4247..>4544
location: region:4247-4544:1
so has part: feature:4247-4544:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4247-4544:1:exon

BBIDN127_RS06145
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06145
old locus tag: BbiDN127_D0008
pseudo: true
so part of: sequence
location: <4611..>4949
location: region:4611-4949:1
so has part: feature:4611-4949:1:exon
subclass of: SO_0000010

position:4611:1
position: 4611
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4949:1
position: 4949
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4611-4949:1:exon

BBIDN127_RS06145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06145
old locus tag: BbiDN127_D0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540434.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
SIO_010081: BBIDN127_RS06145
subclass of: SO_0000673
so part of: BBIDN127_RS06145
location: <4611..>4949
location: region:4611-4949:1
so has part: feature:4611-4949:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4611-4949:1:exon

BBIDN127_RS06150
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06150
old locus tag: BbiDN127_D0009
so part of: sequence
location: 5495..6349
location: region:5495-6349:1
so has part: feature:5495-6349:1:exon
subclass of: SO_0000010

position:5495:1
position: 5495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6349:1
position: 6349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5495-6349:1:exon

BBIDN127_RS06150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06150
old locus tag: BbiDN127_D0009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: complement regulator-acquiring protein
translation: MKTPKLNKSKINIITAILTSICISCAPLGNVNPNKLKSRTTTRNLKKTKTRANSKNLKKPNSHTNSENLSENSTKNLSTNNQNFENESQNSKSSNQNSQEQTATSKLEKIGKDLETQEKQDNIQIAKIDTKYDFLDTFKLQNDDYFMHREKMKLKKIIYSSLNYDTEKILTLKEILEKLDKNYDNRTIAGKFLETSKNIQLQIEDRHLTKIQNILPTLSKKNAEELLQKTEQDLKIKQNFVKALNETIAAYNKNSGNIKKNDAALANHIKEKYSHPLYLLNQAD
SIO_010081: BBIDN127_RS06150
subclass of: SO_0000673
so part of: BBIDN127_RS06150
location: 5495..6349
location: region:5495-6349:1
so has part: feature:5495-6349:1:exon

WP_014023071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5495-6349:1:exon

BBIDN127_RS06155
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06155
old locus tag: BbiDN127_D0010
so part of: sequence
location: 7151..8053
location: region:7151-8053:1
so has part: feature:7151-8053:1:exon
subclass of: SO_0000010

position:7151:1
position: 7151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8053:1
position: 8053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7151-8053:1:exon

BBIDN127_RS06155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06155
old locus tag: BbiDN127_D0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023124.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P12 family lipoprotein
translation: MKKIILAIYMLMLLILLSCNTSSLNELMSKTKERFIAKKEDSESIKKTQKDGKIVEQYLEEREKQIVQADPVESVNAENLVILNFPYYPQKEIEIKEEDLSPSTDEEKEAEKVISDVKSALVDLKFSKLIDDEHKLKNEYEQLESSFHTVYYAILELKNKLWGHLRQNNAKKHKHNNIERQKLTQLGQLNNNLNKKRADIDELRIKLESGLNERTSAKYFFEKAQKTLKEAIAERLKNKHSNWSRKKNSNLLAKKARNEAENALRQLETSSIAIGQIMGRKKEVEELIQEAKSVLANFKK
SIO_010081: BBIDN127_RS06155
subclass of: SO_0000673
so part of: BBIDN127_RS06155
location: 7151..8053
location: region:7151-8053:1
so has part: feature:7151-8053:1:exon

WP_014023072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7151-8053:1:exon

BBIDN127_RS07835
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07835
pseudo: true
so part of: sequence
location: complement(<8645..9027)
location: region:8645-9027:-1
so has part: feature:8645-9027:-1:exon
subclass of: SO_0000010

position:8645:-1
position: 8645
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:9027:-1
position: 9027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8645-9027:-1:exon

BBIDN127_RS07835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258321.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ferrous iron transporter A
SIO_010081: BBIDN127_RS07835
subclass of: SO_0000673
so part of: BBIDN127_RS07835
location: complement(<8645..9027)
location: region:8645-9027:-1
so has part: feature:8645-9027:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8645-9027:-1:exon

BBIDN127_RS06160
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06160
pseudo: true
so part of: sequence
location: <9019..9709
location: region:9019-9709:1
so has part: feature:9019-9709:1:exon
subclass of: SO_0000010

position:9019:1
position: 9019
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:9709:1
position: 9709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9019-9709:1:exon

BBIDN127_RS06160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258321.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ferrous iron transporter A
SIO_010081: BBIDN127_RS06160
subclass of: SO_0000673
so part of: BBIDN127_RS06160
location: <9019..9709
location: region:9019-9709:1
so has part: feature:9019-9709:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9019-9709:1:exon

BBIDN127_RS07740
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07740
old locus tag: BbiDN127_D0016
so part of: sequence
location: complement(11095..11283)
location: region:11095-11283:-1
so has part: feature:11095-11283:-1:exon
subclass of: SO_0000010

position:11095:-1
position: 11095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11283:-1
position: 11283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11095-11283:-1:exon

BBIDN127_RS07740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07740
old locus tag: BbiDN127_D0016
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKQEKLWLKLPKIEFLSLLCLHNINKGNEIIKNVVVEKDTNNKYYILLSVESIKIIILNIC
SIO_010081: BBIDN127_RS07740
subclass of: SO_0000673
so part of: BBIDN127_RS07740
location: complement(11095..11283)
location: region:11095-11283:-1
so has part: feature:11095-11283:-1:exon

WP_014023078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11095-11283:-1:exon

BBIDN127_RS06175
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06175
old locus tag: BbiDN127_D0017
so part of: sequence
location: 11697..12512
location: region:11697-12512:1
so has part: feature:11697-12512:1:exon
subclass of: SO_0000010

position:11697:1
position: 11697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12512:1
position: 12512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11697-12512:1:exon

BBIDN127_RS06175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06175
old locus tag: BbiDN127_D0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011703894.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence associated lipoprotein
translation: MKHKIIAGLFVFLFLACNTDFNTKQKDMKYQSSKKRLKSKKKGLTPKTKANPLQEESSTNQKEDHDTAPKNTLLNDLRNLIDKAHANNEKYEKKLKEEPKDQYGIEAFKNLGWSSSPGEKVTADTERAKRYRKNTYSILNTIDDNQLKKFSEIVMLSGQIQGIFNTIEAIEYTLSSLIVPSLYPKKGNLENLEISNLEKLKDLFEKVLSIKTTISKMMRQFLLDYQTDTNQIKTDENKLKSHADKLFNQISEKKKEAEKLKDDIFPIINNI
SIO_010081: BBIDN127_RS06175
subclass of: SO_0000673
so part of: BBIDN127_RS06175
location: 11697..12512
location: region:11697-12512:1
so has part: feature:11697-12512:1:exon

WP_014023079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11697-12512:1:exon

BBIDN127_RS06180
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06180
old locus tag: BbiDN127_D0018
so part of: sequence
location: 13380..14063
location: region:13380-14063:1
so has part: feature:13380-14063:1:exon
subclass of: SO_0000010

position:13380:1
position: 13380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14063:1
position: 14063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13380-14063:1:exon

BBIDN127_RS06180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06180
old locus tag: BbiDN127_D0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010258240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSKTFIFLIFLIKNLTIYAQSINYEFKQAKIKNLKGIFINYKVYLTEDLAIDNVKTLNHISTFKINLVIDKKIATSIKNEQDVIRAGNECGIFLEFQINNRIYYAKFSSIKYILQAIESFARLKNTINNLEIKNLEGNGIFLYKNGHSYNLKTDFQETAIFVNFLGFKDTTGRPYFIFYYDNIEGKDKNLKTILISFEEFHNGIREGLFLLKNEKAILEFINFSKN
SIO_010081: BBIDN127_RS06180
subclass of: SO_0000673
so part of: BBIDN127_RS06180
location: 13380..14063
location: region:13380-14063:1
so has part: feature:13380-14063:1:exon

WP_014023080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13380-14063:1:exon

BBIDN127_RS06185
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06185
old locus tag: BbiDN127_D0019
so part of: sequence
location: complement(14225..14803)
location: region:14225-14803:-1
so has part: feature:14225-14803:-1:exon
subclass of: SO_0000010

position:14225:-1
position: 14225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14803:-1
position: 14803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14225-14803:-1:exon

BBIDN127_RS06185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06185
old locus tag: BbiDN127_D0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012614979.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSKFILKYIISAFFLVSCQTYQIAYDRFSQVLDSQYDIGVNYSRDAIFKSVISIKYDKLKNKREYFILVRAQSKNSGQIKLEKIITDTRFESKGELVSENSKRVVYYNDFYDSYFPYDHTTVVTEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIYAFRNDVIVSFNKIPFKKFLDDFNLKVKLLGGS
SIO_010081: BBIDN127_RS06185
subclass of: SO_0000673
so part of: BBIDN127_RS06185
location: complement(14225..14803)
location: region:14225-14803:-1
so has part: feature:14225-14803:-1:exon

WP_014023081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14225-14803:-1:exon

BBIDN127_RS06190
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06190
old locus tag: BbiDN127_D0020
so part of: sequence
location: 15031..15984
location: region:15031-15984:1
so has part: feature:15031-15984:1:exon
subclass of: SO_0000010

position:15031:1
position: 15031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15984:1
position: 15984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15031-15984:1:exon

BBIDN127_RS06190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06190
old locus tag: BbiDN127_D0020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023082.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYTDPRSIINTYFVKNKKIFIINPIALKFELNFEKIIQINSKENISLKKFKGGIISLKLRSNEFSKLPKDILKGKLEFYINYVSEEKLKIVYDMMVVKVYAIDLKANNKDEICLIELKILGSIYRKENIENGFIPIIKNNNTYLFENKANNQKVNLLLKGIDKTIELPFLTKISYSNIKTINNADIKTNENLNANIKTTNRMLLNLSTKIYEELILTKSNQIKTINNKQKILKTLRSFIENENGLGGKIRLISLEKTNFLTKNLYLNSLDFILNDINIIQENSYIRIDITLLEDKIEKKYFNQASNVNPFLKNITLL
SIO_010081: BBIDN127_RS06190
subclass of: SO_0000673
so part of: BBIDN127_RS06190
location: 15031..15984
location: region:15031-15984:1
so has part: feature:15031-15984:1:exon

WP_014023082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15031-15984:1:exon

BBIDN127_RS06195
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06195
old locus tag: BbiDN127_D0021
so part of: sequence
location: 16134..16460
location: region:16134-16460:1
so has part: feature:16134-16460:1:exon
subclass of: SO_0000010

position:16134:1
position: 16134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16460:1
position: 16460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16134-16460:1:exon

BBIDN127_RS06195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06195
old locus tag: BbiDN127_D0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257662.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIHVDNRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLRIEQAKKIMSRKSTKHEIQITSKKMGHTL
SIO_010081: BBIDN127_RS06195
subclass of: SO_0000673
so part of: BBIDN127_RS06195
location: 16134..16460
location: region:16134-16460:1
so has part: feature:16134-16460:1:exon

WP_014023083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16134-16460:1:exon

BBIDN127_RS06200
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06200
old locus tag: BbiDN127_D0022
so part of: sequence
location: 16616..17722
location: region:16616-17722:1
so has part: feature:16616-17722:1:exon
subclass of: SO_0000010

position:16616:1
position: 16616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17722:1
position: 17722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16616-17722:1:exon

BBIDN127_RS06200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06200
old locus tag: BbiDN127_D0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890254.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MIIKIKNNVNTNFNNLITLEEIIKYNQKNTSSNLIELKHSRLKSYLTKKKAIYQRILKVCWAIELKNKEYYKSNKIKTYSTIEIFNIVNKCLAKDKKKISIRTLEYDISFLNQILLITTKLKHLGKDNGSFAFYIQNKNLWKHRFTIIQDAINEEIKEYLKDKKIVSDFSKEINHTTKKNNIKNIKSKHSIADESIADVIPKGIKDINKIKNSIEKNDKKINKISYKEFIVNGLIKIHKIEKLQITKILKISNNEKTYVNALRNLKSAIEKYKEEYKIEDISNHFIKEFKSRYSKKIWMMNGKTEKTNDFNEIWENRFKKKFLSKTLKEKYQSNCEKENKIIVNNKKRVNILFSNNNGFKRIIKINKN
SIO_010081: BBIDN127_RS06200
subclass of: SO_0000673
so part of: BBIDN127_RS06200
location: 16616..17722
location: region:16616-17722:1
so has part: feature:16616-17722:1:exon

WP_014023084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16616-17722:1:exon

BBIDN127_RS06205
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06205
old locus tag: BbiDN127_D0023
so part of: sequence
location: complement(17900..18118)
location: region:17900-18118:-1
so has part: feature:17900-18118:-1:exon
subclass of: SO_0000010

position:17900:-1
position: 17900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18118:-1
position: 18118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17900-18118:-1:exon

BBIDN127_RS06205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06205
old locus tag: BbiDN127_D0023
inference: COORDINATES: protein motif:HMM:NF036597.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5425 family lipoprotein
translation: MNTDESKIDTISNFEKKYMNNLDYQCLSQKESAVRNSQIKLSGNINEKRFYSSRISNVSNYYDKTNTSCKRK
SIO_010081: BBIDN127_RS06205
subclass of: SO_0000673
so part of: BBIDN127_RS06205
location: complement(17900..18118)
location: region:17900-18118:-1
so has part: feature:17900-18118:-1:exon

WP_233421656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17900-18118:-1:exon

BBIDN127_RS07840
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07840
pseudo: true
so part of: sequence
location: <18581..>18664
location: region:18581-18664:1
so has part: feature:18581-18664:1:exon
subclass of: SO_0000010

position:18581:1
position: 18581
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:18664:1
position: 18664
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18581-18664:1:exon

BBIDN127_RS07840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023152.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: BBIDN127_RS07840
subclass of: SO_0000673
so part of: BBIDN127_RS07840
location: <18581..>18664
location: region:18581-18664:1
so has part: feature:18581-18664:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18581-18664:1:exon

BBIDN127_RS06210
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06210
old locus tag: BbiDN127_D0024
so part of: sequence
location: complement(19182..19844)
location: region:19182-19844:-1
so has part: feature:19182-19844:-1:exon
subclass of: SO_0000010

position:19182:-1
position: 19182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19844:-1
position: 19844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19182-19844:-1:exon

BBIDN127_RS06210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06210
old locus tag: BbiDN127_D0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257672.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKELTINYNEYTIGGIKGTFFGNSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKALSDPNFSSTNIAMNCINTFKLIVDIVNMQTGENYDYDTFITKTETEKMLKYGTKIIAALARHFDEQSRTNFNESYYEWEKGWVDKKWINYEPTSEEIKEIQAINQKSNSLKLKHGKTPPNKGQIRLLKAINKIESQSQQQNVKPNRKTKKLKRNLGGKAKI
SIO_010081: BBIDN127_RS06210
subclass of: SO_0000673
so part of: BBIDN127_RS06210
location: complement(19182..19844)
location: region:19182-19844:-1
so has part: feature:19182-19844:-1:exon

WP_014023086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19182-19844:-1:exon

BBIDN127_RS06215
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06215
old locus tag: BbiDN127_D0027
so part of: sequence
location: 21233..21973
location: region:21233-21973:1
so has part: feature:21233-21973:1:exon
subclass of: SO_0000010

position:21233:1
position: 21233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21973:1
position: 21973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21233-21973:1:exon

BBIDN127_RS06215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06215
old locus tag: BbiDN127_D0027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014540544.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKKIAFHIQKGGVGKTTLSGNIASYLSKTKKVILVDCDIQQGSSSTWFLNHEILKLDIKDSLLKKVDIDQVLRQIQKNFYIFPCVPSGTFRRDVQHELQDSPYLIDDFCLELEKLGFEFAIFDLSPSFELWERRIILAMCEVVTPLTPEFLSLEGINIFKEEFDSLLKSYRKKVKHEKIICNMLNKSFKRHNLHLKQFKTFGYDLYEVGQDAKIAESQLYKKSIFDYCSESRSILELSRLGDALCL
SIO_010081: BBIDN127_RS06215
subclass of: SO_0000673
so part of: BBIDN127_RS06215
location: 21233..21973
location: region:21233-21973:1
so has part: feature:21233-21973:1:exon

WP_014023089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21233-21973:1:exon

BBIDN127_RS06220
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06220
old locus tag: BbiDN127_D0028
so part of: sequence
location: 21964..22233
location: region:21964-22233:1
so has part: feature:21964-22233:1:exon
subclass of: SO_0000010

position:21964:1
position: 21964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22233:1
position: 22233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21964-22233:1:exon

BBIDN127_RS06220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06220
old locus tag: BbiDN127_D0028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010257680.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPISKEVDLEEIIKQNVSKSKFAFRDDDVISNNISNVKPGRSKMMTKQVSVGLKHEYWIEFYSILDKKGLTASGFIRALIMEYIEASRK
SIO_010081: BBIDN127_RS06220
subclass of: SO_0000673
so part of: BBIDN127_RS06220
location: 21964..22233
location: region:21964-22233:1
so has part: feature:21964-22233:1:exon

WP_014023090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21964-22233:1:exon

BBIDN127_RS06230
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06230
old locus tag: BbiDN127_D0031
so part of: sequence
location: 24537..24791
location: region:24537-24791:1
so has part: feature:24537-24791:1:exon
subclass of: SO_0000010

position:24537:1
position: 24537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24791:1
position: 24791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24537-24791:1:exon

BBIDN127_RS06230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06230
old locus tag: BbiDN127_D0031
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDYEYVYKFLDEWIQKKYNAKLGFTIEKVDGLEYICKAKRYSSLKKILARIVKDYKEIFLGRLQKDGSGVAAVPGSGGKRQGGS
SIO_010081: BBIDN127_RS06230
subclass of: SO_0000673
so part of: BBIDN127_RS06230
location: 24537..24791
location: region:24537-24791:1
so has part: feature:24537-24791:1:exon

WP_014023093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24537-24791:1:exon

BBIDN127_RS06235
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS06235
old locus tag: BbiDN127_D0032
so part of: sequence
location: 24943..25479
location: region:24943-25479:1
so has part: feature:24943-25479:1:exon
subclass of: SO_0000010

position:24943:1
position: 24943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25479:1
position: 25479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24943-25479:1:exon

BBIDN127_RS06235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS06235
old locus tag: BbiDN127_D0032
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014486298.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF226 domain-containing protein
translation: MYHTRLMNVLWAWRVSKKMFAIFFANTLNKEKKAVYLYPLKEGDVFYGIFYGYKRIKGNRFFNDYASVCRFSKKNFKTFNKAYYLEFRFKTGSVFMYVHTISYFVDGRNIRSIRKLYKKILKLEQEVFKFYSKDLQPEGIITKWVSKIKQKREERLDQIGNLINPPPHLRVRSRFRKF
SIO_010081: BBIDN127_RS06235
subclass of: SO_0000673
so part of: BBIDN127_RS06235
location: 24943..25479
location: region:24943-25479:1
so has part: feature:24943-25479:1:exon

WP_014023094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24943-25479:1:exon

BBIDN127_RS06240
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06240
old locus tag: BbiDN127_D0034
so part of: sequence
location: 25558..26247
location: region:25558-26247:1
so has part: feature:25558-26247:1:exon
subclass of: SO_0000010

position:25558:1
position: 25558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26247:1
position: 26247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25558-26247:1:exon

BBIDN127_RS06240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
gene: bdr
locus tag: BBIDN127_RS06240
old locus tag: BbiDN127_D0034
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010256603.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Bdr family repetitive protein
translation: MESVLATNITEEQIYKEFLRLGMEQLIAQDLSKRYYHNELTYRDLENLEKQFGIKFDNLEFKIDTVEKNLQKDISNLDIKIDTVEKNLQKDISNLDIKIDTVEKNLNAKIDGVEKNLQKDISNLDIKIDNVEKNLNAKIDGVEKNLQKDMFNLEQRLEAKLEANNKVLLEKLEANNKVLLEKLEANNKVLLEKLSVKNRVSVVIASVVSPIVLSILASLIMLLIGNYFK
SIO_010081: BBIDN127_RS06240
subclass of: SO_0000673
so part of: BBIDN127_RS06240
location: 25558..26247
location: region:25558-26247:1
so has part: feature:25558-26247:1:exon

WP_044055019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25558-26247:1:exon

BBIDN127_RS07745
type: Gene
subclass of: SO_0000704
RO_0002162: 521010
locus tag: BBIDN127_RS07745
old locus tag: BbiDN127_D0035
so part of: sequence
location: complement(26270..26893)
location: region:26270-26893:-1
so has part: feature:26270-26893:-1:exon
subclass of: SO_0000010

position:26270:-1
position: 26270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26893:-1
position: 26893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26270-26893:-1:exon

BBIDN127_RS07745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 521010
locus tag: BBIDN127_RS07745
old locus tag: BbiDN127_D0035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014023186.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASGISLAHLKNQNIKTPYNFKSDILSYALDNGLQIETYSLICSNEISRCIENLDKNRLLSIDARRINYVANNIFGFRITAKQLKIIYSLIAKSKETLNEITYNSNSQNFFLVKTPCILNLSQKLNYIKSFAPLKLNQSNLNHYLNSSTGTKLTIINLISNFFTEKEPCKNLHNLKLYINANLKKLGIYKNTNKLQKHIISKNFFLD
SIO_010081: BBIDN127_RS07745
subclass of: SO_0000673
so part of: BBIDN127_RS07745
location: complement(26270..26893)
location: region:26270-26893:-1
so has part: feature:26270-26893:-1:exon

WP_014023097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26270-26893:-1:exon