Vagococcus teuberi strain DSM 21459 plasmid pTB1.
type: Entry
definition: Vagococcus teuberi strain DSM 21459 plasmid pTB1.
sequence version: NZ_CP017268.1
sequence date: 2023-03-24
sequence: sequence
division: CON
label: NZ_CP017268.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05781328
keyword: RefSeq
source: Vagococcus teuberi
organism: Vagococcus teuberi
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP017268.1.\nBacteria and/or source DNA is available from the Laboratory of Food\nBiotechnology Institute of Food, Nutrition and Health ETH Zurich.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC NGS Cell v. 8.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 13:47:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,192\nCDSs (total) :: 2,112\nGenes (coding) :: 2,038\nCDSs (with protein) :: 2,038\nGenes (RNA) :: 80\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 37 of 74\nPseudo Genes (incomplete) :: 40 of 74\nPseudo Genes (internal stop) :: 32 of 74\nPseudo Genes (multiple problems) :: 31 of 74\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 15225
topology: linear
so has quality: SO_0000987
location: 1..15225
location: region:1-15225:1
RO_0002162: 519472

NZ_CP017268
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05781328
type: BioSample
SIO_000068: biosample

1
title: Vagococcus teuberi sp. nov., isolated from the Malian artisanal sour milk fene
author: Wullschleger, S.
author: Seifert, C.
author: Baumgartner, S.
author: Lacroix, C.
author: Bonfoh, B.
author: Stevens, M.J.
author: Meile, L.
journal: Unpublished

2
title: Direct Submission
author: Stevens, M.J.
author: Inglin, R.C.
author: Meile, L.
journal: Submitted (16-SEP-2016) Laboratory of Food Biotechnology, ETH Zurich, schmelzbergstrasse, Zurich 8092, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15225:1
position: 15225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15225:1:source
so part of: sequence
organism: Vagococcus teuberi
mol type: genomic DNA
strain: DSM 21459
isolation source: milk
culture collection: DSM:21459
type material: type strain of Vagococcus teuberi
plasmid: pTB1
country: Mali
collection date: 2009-01-05

519472
type: Taxonomy
SIO_000068: taxonomy

BHY08_RS10560
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10560
old locus tag: BHY08_10565
so part of: sequence
location: complement(144..1409)
location: region:144-1409:-1
so has part: feature:144-1409:-1:exon
subclass of: SO_0000010

position:144:-1
position: 144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1409:-1
position: 1409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144-1409:-1:exon

BHY08_RS10560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10560
old locus tag: BHY08_10565
inference: COORDINATES: protein motif:HMM:TIGR00341.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIGR00341 family protein
translation: MNTYNKKDNPFLVKINSELHFNIEDIIILICSIFIASIGLNMNSTPIVIGAMLISPLMTSVIGIGISLAFQDTSILRKSITLLALQVIVSLVVSTLYFSFSPLTYASSEIIARTNPTIWDVVIAFTGGVAGVIGFKKKTANNIVPGVAIATALMPPLCTLGYAISIQSMTYIFGAFYLFVINIFFISLSTFITVYIFEAKHDKQIDSIKKKSTNAMFIILTIIIIIPSIYTASSMVKDSLNENNLNRFIESELKDSLILEKKISKEKKTIHLTLSDTSINDTKLQSLQNKLPEYHLGNMDLNIKQITETDSLSGKELEHLIRQLIDSETSVRPSVKEDPQTLEDFIIEKNKIIKTNFPLDIKKLYMNSEVASNEKQIKNVLTIELKSNLTKSLESDIESYVLDTYNNKIDNLSIVFKEDEN
SIO_010081: BHY08_RS10560
subclass of: SO_0000673
so part of: BHY08_RS10560
location: complement(144..1409)
location: region:144-1409:-1
so has part: feature:144-1409:-1:exon

WP_071457895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:144-1409:-1:exon

BHY08_RS10855
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10855
so part of: sequence
location: complement(1794..1925)
location: region:1794-1925:-1
so has part: feature:1794-1925:-1:exon
subclass of: SO_0000010

position:1794:-1
position: 1794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1925:-1
position: 1925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1794-1925:-1:exon

BHY08_RS10855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010051320.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTQEQLSEILNVSRSTVSSWEVGRNYPDLETIIAIETDPKVTF
SIO_010081: BHY08_RS10855
subclass of: SO_0000673
so part of: BHY08_RS10855
location: complement(1794..1925)
location: region:1794-1925:-1
so has part: feature:1794-1925:-1:exon

WP_276325603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1794-1925:-1:exon

BHY08_RS10565
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10565
old locus tag: BHY08_10570
so part of: sequence
location: 2409..3134
location: region:2409-3134:1
so has part: feature:2409-3134:1:exon
subclass of: SO_0000010

position:2409:1
position: 2409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3134:1
position: 3134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2409-3134:1:exon

BHY08_RS10565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10565
old locus tag: BHY08_10570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002334375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MESNETVVYRNDLNLVPLKKFRSVEMDIFFAVCSKMKDKGNQDIRLSFDNLKKISGQSDKSYRRFIQDTDLMYQKLLTLTYRTKEKGLTEYFVLFTKFSIDENKQEVSIRVNPDLEYILNDLQIEFTKYELKEFTTLSSRYTKTLYRLLKQYRDTGFYVVNMDSFRQILDIPDSYRMTDIDRQVLNPAMEELNNIFKNIRVEKIKKGRSVVRLKFLFDKQDKIVQEDLPKVPMYNWLKGSN
SIO_010081: BHY08_RS10565
subclass of: SO_0000673
so part of: BHY08_RS10565
location: 2409..3134
location: region:2409-3134:1
so has part: feature:2409-3134:1:exon

WP_071457896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2409-3134:1:exon

BHY08_RS10570
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10570
old locus tag: BHY08_10575
so part of: sequence
location: 3136..3702
location: region:3136-3702:1
so has part: feature:3136-3702:1:exon
subclass of: SO_0000010

position:3136:1
position: 3136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3702:1
position: 3702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3136-3702:1:exon

BHY08_RS10570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10570
old locus tag: BHY08_10575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLTFGKFSKQYNVPRASVYSIMNDLEETNINLYNECVDSSTGTKKLTDVGIQYILELRGITSSSETLERQKSDNVNTINVQDSDKDVLMAIDLLKKELDTRNRQFDILQDNYNKLAKGFKESNETLAELTKNQQLLTKQLQDNNLYIESLKHSQDKSETVQEEKETILDNEEVDNKQKKKSFFSRLFG
SIO_010081: BHY08_RS10570
subclass of: SO_0000673
so part of: BHY08_RS10570
location: 3136..3702
location: region:3136-3702:1
so has part: feature:3136-3702:1:exon

WP_071457897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3136-3702:1:exon

BHY08_RS10575
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10575
old locus tag: BHY08_10580
so part of: sequence
location: complement(3915..4328)
location: region:3915-4328:-1
so has part: feature:3915-4328:-1:exon
subclass of: SO_0000010

position:3915:-1
position: 3915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4328:-1
position: 4328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3915-4328:-1:exon

BHY08_RS10575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10575
old locus tag: BHY08_10580
inference: COORDINATES: protein motif:HMM:NF024252.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MNISDKLKNNRKQAGLTQEEIAQTLHVSRQTISNWETGRSIPDIYSLVELSNIYDISLDHLVKEDIIMMNELKKENKEKKIINRAIILSAVGVILMIISSFIKSSHIQDFSRGFGMGLLLTSAIVLILTKVLRGIYK
SIO_010081: BHY08_RS10575
subclass of: SO_0000673
so part of: BHY08_RS10575
location: complement(3915..4328)
location: region:3915-4328:-1
so has part: feature:3915-4328:-1:exon

WP_071457898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3915-4328:-1:exon

BHY08_RS10580
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10580
old locus tag: BHY08_10585
pseudo: true
so part of: sequence
location: complement(4707..5326)
location: region:4707-5326:-1
so has part: feature:4707-5326:-1:exon
subclass of: SO_0000010

position:4707:-1
position: 4707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5326:-1
position: 5326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4707-5326:-1:exon

BHY08_RS10580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10580
old locus tag: BHY08_10585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019768788.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: NAD(P)H-dependent oxidoreductase
SIO_010081: BHY08_RS10580
subclass of: SO_0000673
so part of: BHY08_RS10580
location: complement(4707..5326)
location: region:4707-5326:-1
so has part: feature:4707-5326:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4707-5326:-1:exon

BHY08_RS11190
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS11190
pseudo: true
so part of: sequence
location: <5367..5503
location: region:5367-5503:1
so has part: feature:5367-5503:1:exon
subclass of: SO_0000010

position:5367:1
position: 5367
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5503:1
position: 5503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5367-5503:1:exon

BHY08_RS11190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS11190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003759224.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: BHY08_RS11190
subclass of: SO_0000673
so part of: BHY08_RS11190
location: <5367..5503
location: region:5367-5503:1
so has part: feature:5367-5503:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5367-5503:1:exon

BHY08_RS10585
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10585
old locus tag: BHY08_10590
pseudo: true
so part of: sequence
location: <5559..6392
location: region:5559-6392:1
so has part: feature:5559-6392:1:exon
subclass of: SO_0000010

position:5559:1
position: 5559
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:6392:1
position: 6392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5559-6392:1:exon

BHY08_RS10585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10585
old locus tag: BHY08_10590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834526.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: BHY08_RS10585
subclass of: SO_0000673
so part of: BHY08_RS10585
location: <5559..6392
location: region:5559-6392:1
so has part: feature:5559-6392:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5559-6392:1:exon

BHY08_RS10590
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10590
old locus tag: BHY08_10595
so part of: sequence
location: complement(7029..7880)
location: region:7029-7880:-1
so has part: feature:7029-7880:-1:exon
subclass of: SO_0000010

position:7029:-1
position: 7029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7880:-1
position: 7880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7029-7880:-1:exon

BHY08_RS10590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10590
old locus tag: BHY08_10595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014931719.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldo/keto reductase
translation: MKNIKLNNGVEVPLVGFGTFQITEPLEAEKAVINAIKSGYRHIDTAQSYMNEEAVGKGISKSGVARSELFITTKIWVENVSYKGVLDSFERSLKRLDLEYIDLLLIHQPYNDVYGAWKAMEELQESGRVRAIGVSNFSVDRVVDLAAFNKVAPQVNQIEINPFHQQTETIEALKNEKVVVEAWAPFAEGKNNIFSNPILKDIGDKYNKSVAQVIVRWLVEQDILVLTKSVNINRMKENIDVFDFSLSTEDKEKIAELDLSTSQFFSHSDPEMVKWMASRKLGI
SIO_010081: BHY08_RS10590
subclass of: SO_0000673
so part of: BHY08_RS10590
location: complement(7029..7880)
location: region:7029-7880:-1
so has part: feature:7029-7880:-1:exon

WP_071457899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7029-7880:-1:exon

BHY08_RS10595
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10595
old locus tag: BHY08_10600
so part of: sequence
location: complement(7883..8314)
location: region:7883-8314:-1
so has part: feature:7883-8314:-1:exon
subclass of: SO_0000010

position:7883:-1
position: 7883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8314:-1
position: 8314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7883-8314:-1:exon

BHY08_RS10595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10595
old locus tag: BHY08_10600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003768444.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MKIKEAAEMFSLPIDTLRYYERIEIIPPVKRNESGYREYQLQDLNWIFLVTNLRKAGISIESLIEFSRLAQLKDKQNVEQAQKDILNEQLDELNEKIAELTQTRELLEYKINSFDDHITQFKLGKVTPDNVEKLWEFNKKSEE
SIO_010081: BHY08_RS10595
subclass of: SO_0000673
so part of: BHY08_RS10595
location: complement(7883..8314)
location: region:7883-8314:-1
so has part: feature:7883-8314:-1:exon

WP_071457900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7883-8314:-1:exon

BHY08_RS10600
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10600
old locus tag: BHY08_10605
so part of: sequence
location: 9141..9821
location: region:9141-9821:1
so has part: feature:9141-9821:1:exon
subclass of: SO_0000010

position:9141:1
position: 9141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9821:1
position: 9821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9141-9821:1:exon

BHY08_RS10600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10600
old locus tag: BHY08_10605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: BHY08_RS10600
subclass of: SO_0000673
so part of: BHY08_RS10600
location: 9141..9821
location: region:9141-9821:1
so has part: feature:9141-9821:1:exon

WP_001015311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9141-9821:1:exon

BHY08_RS10605
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10605
old locus tag: BHY08_10610
so part of: sequence
location: complement(10562..12679)
location: region:10562-12679:-1
so has part: feature:10562-12679:-1:exon
subclass of: SO_0000010

position:10562:-1
position: 10562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12679:-1
position: 12679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10562-12679:-1:exon

BHY08_RS10605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10605
old locus tag: BHY08_10610
EC number: 7.2.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017865288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MSKETSSKTYRVEGLSCTNCAAKFEKNVKSIEGVTDAKVNFGAGKIKVEGTSSIQEIKSAGAFENLIIQDEDNQESEGGQKDSFLKRNWKLVISVILIAIAFYFRATVGENDIITKSLFISAIVIGGFSLFTEGIKDLLKLNFSMEVLMTVAIIGASIIGEWAEGSIVVILFAVSEALERFSMDRARQSIRSLMDIAPKEALIRRNNEEKMINVSDIQIGDIMIIKPGQKIAMDGVVIKGHSAVNQAAITGESVPIEKQIKDEIFAGTLNEEGILEVEVTKHVNDTTIAKIIHLVEEAQGERAPAQAFVDNFAKYYTPSIMAISALIIIIPPLFFGGDWNKWLYQGLSLLVVGCPCSLVISTPVSIVSAIGNSAKNGVLVKGGIYLEEIGGLKAIAFDKTGTLTKGTPSVTDFVLSDTNQENQYLSIISALEILSQHPLASAILKEADRRESNYQMIDIMNFKSVTGKGIKGDYQGTTYFVGSPKLFDSELIRQASVMKIYEKLQEQGKTVMIFGTAQNILAIIAVADELRKSSSEIIAKLHQLGIEHTIMLTGDNIRTAKSIGEQVGMTDIKGDLMPQDKLDYIKELKEKYGKVAMVGDGVNDAPALASATVGIAMGGAGTDTALETADVALMGDDLQKLPFIVNLSRKTLKIIKQNITFSLSIKFLALLLIIPGWLSLWIAIVADMGATLLVTLNGLRLMKQK
SIO_010081: BHY08_RS10605
subclass of: SO_0000673
so part of: BHY08_RS10605
location: complement(10562..12679)
location: region:10562-12679:-1
so has part: feature:10562-12679:-1:exon

WP_071457901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10562-12679:-1:exon

BHY08_RS10610
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10610
old locus tag: BHY08_10615
so part of: sequence
location: complement(12672..13034)
location: region:12672-13034:-1
so has part: feature:12672-13034:-1:exon
subclass of: SO_0000010

position:12672:-1
position: 12672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13034:-1
position: 13034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12672-13034:-1:exon

BHY08_RS10610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10610
old locus tag: BHY08_10615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003726380.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MTNEICEITCIHEEQVTNSKERLKNTNSKDLSSLFKILSDENRFKILHALAYEDQLCVCDVANIIGATMANTSHHLQSLKKLGVVDSKKIGKLVYYFSSDDRIVELINLGKQLEQGDRCE
SIO_010081: BHY08_RS10610
subclass of: SO_0000673
so part of: BHY08_RS10610
location: complement(12672..13034)
location: region:12672-13034:-1
so has part: feature:12672-13034:-1:exon

WP_071457902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12672-13034:-1:exon

BHY08_RS10615
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
gene: fghA
locus tag: BHY08_RS10615
old locus tag: BHY08_10620
so part of: sequence
location: complement(13203..14042)
location: region:13203-14042:-1
so has part: feature:13203-14042:-1:exon
subclass of: SO_0000010

position:13203:-1
position: 13203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14042:-1
position: 14042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13203-14042:-1:exon

BHY08_RS10615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
gene: fghA
locus tag: BHY08_RS10615
old locus tag: BHY08_10620
EC number: 3.1.2.12
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013709848.1
GO function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO process: GO:0046292 - formaldehyde metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-formylglutathione hydrolase
translation: MDLKILEIHTSFGGKQIKCQHTSKILKCEMIFSLFLPKSKSETVPLIWWLAGLTCTDDNFSQKGAFQKYASEQNVAFIMPDTSPRGNVADSDDWDLGQGASFYINATLEPWKENFQMYDYLTKELPELVYTLIPNFSGKESIMGHSMGGHGALVLGLRNPNRFVSISAFAPISNPSNVPWGKKAFSSYLGNDKSAWKEWDATEIIKKSTKNNVPILITQGTDDNFYELQLDEEAFLSAAKNVDRDVTYKREIGYDHSYFTIATFIESHIKFHLRELKKI
SIO_010081: BHY08_RS10615
subclass of: SO_0000673
so part of: BHY08_RS10615
location: complement(13203..14042)
location: region:13203-14042:-1
so has part: feature:13203-14042:-1:exon

WP_071457903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13203-14042:-1:exon

BHY08_RS10620
type: Gene
subclass of: SO_0000704
RO_0002162: 519472
locus tag: BHY08_RS10620
old locus tag: BHY08_10625
so part of: sequence
location: complement(14047..15162)
location: region:14047-15162:-1
so has part: feature:14047-15162:-1:exon
subclass of: SO_0000010

position:14047:-1
position: 14047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15162:-1
position: 15162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14047-15162:-1:exon

BHY08_RS10620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 519472
locus tag: BHY08_RS10620
old locus tag: BHY08_10625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014824368.1
GO function: GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO process: GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
translation: MKSRAAVAFGPNKPLEIVEIDVEDPKENEVMVKILYTSVCHTDAYTLSGEDPEGVFPVVLGHEGAGVVVKVGSGVTSVKEGDHVIPLYTAECGKCKFCLSGKTNLCSAVRESQGKGVMPDGTTRFSYNGEPIYHYMGTSTFSEYTVVNEINLVKINENAPLEKVGLLGCGVTTGIGAVENTAKVEEGAITAVFGLGAIGLAVIQGLKKVNAQRIIAVDTNPDKWELAKKMGATDFVNPKDYEKPIQEVIVEMTDGGVDYSFECIGNVEVMRSALESCHKGWGESIIIGVAGAGKEIHTRPFQLVTGRVWKGSAFGGVKGRTQLPGMVEEFMDGKIDLDSFITHRLSFSQINESFELLHNGESIRTMLTYGD
SIO_010081: BHY08_RS10620
subclass of: SO_0000673
so part of: BHY08_RS10620
location: complement(14047..15162)
location: region:14047-15162:-1
so has part: feature:14047-15162:-1:exon

WP_071457904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14047-15162:-1:exon