Vagococcus teuberi strain DSM 21459 plasmid pTB1.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.
Vagococcus teuberi sp. nov., isolated from the Malian artisanal sour milk fene
Submitted (16-SEP-2016) Laboratory of Food Biotechnology, ETH Zurich, schmelzbergstrasse, Zurich 8092, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP017268.1.\nBacteria and/or source DNA is available from the Laboratory of Food\nBiotechnology Institute of Food, Nutrition and Health ETH Zurich.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC NGS Cell v. 8.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 13:47:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,192\nCDSs (total) :: 2,112\nGenes (coding) :: 2,038\nCDSs (with protein) :: 2,038\nGenes (RNA) :: 80\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 37 of 74\nPseudo Genes (incomplete) :: 40 of 74\nPseudo Genes (internal stop) :: 32 of 74\nPseudo Genes (multiple problems) :: 31 of 74\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:TIGR00341.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010051320.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002334375.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_019768788.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003759224.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002834526.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014931719.1
COORDINATES: similar to AA sequence:RefSeq:WP_003768444.1
COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS1216 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017865288.1
COORDINATES: similar to AA sequence:RefSeq:WP_003726380.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013709848.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014824368.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase