[Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae; Lachnospira.
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
Genomic and transcriptional studies of human gut bacteria suggest mutualistic relationship between model Bacteroidetes and Firmicutes
Submitted (03-JUN-2008) Center for Genome Sciences, Washington University in St. Louis, 4444 Forest Park Ave., St. Louis, MO 63108, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001105.1.\nSource DNA is available from Jeffrey I. Gordon, jgordon@wustl.edu.\nThis genome was sequenced by the Genome Sequencing Center,\nWashington University School of Medicine, Washington University in\nSt. Louis.\nSource DNA is available from Jeffrey I. Gordon, jgordon@wustl.edu.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 01:27:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,737\nCDSs (total) :: 2,671\nGenes (coding) :: 2,635\nCDSs (with protein) :: 2,635\nGenes (RNA) :: 66\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 10 of 36\nPseudo Genes (incomplete) :: 30 of 36\nPseudo Genes (internal stop) :: 6 of 36\nPseudo Genes (multiple problems) :: 8 of 36\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015517591.1
GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015517590.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744423.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015517589.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517588.1
COORDINATES: protein motif:HMM:NF040910.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744426.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517585.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517584.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320184.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517583.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517582.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517581.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320188.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320189.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012744435.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744437.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517578.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517577.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012744440.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320195.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744442.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517575.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517574.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320199.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517572.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR01641.1
GO:0044423 - virion component [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]; GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012744449.1
GO:0046798 - viral portal complex [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0051027 - DNA transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009320205.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744452.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517568.1
COORDINATES: similar to AA sequence:RefSeq:WP_002350148.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744455.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015517564.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320211.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744458.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744459.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009320214.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517562.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320215.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744463.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517561.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009320218.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517560.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320222.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744469.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744471.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320225.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744476.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517557.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517556.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517555.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320241.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517549.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015517547.1
COORDINATES: similar to AA sequence:RefSeq:WP_015530174.1
nucleoside triphosphate pyrophosphohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009320245.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320247.1
sporulation transcriptional regulator SpoIIID
COORDINATES: similar to AA sequence:RefSeq:WP_012744488.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744489.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517542.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517541.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744492.1
COORDINATES: similar to AA sequence:RefSeq:WP_015522063.1
COORDINATES: protein motif:HMM:NF025717.2
COORDINATES: similar to AA sequence:RefSeq:WP_009320255.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517538.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012744499.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012744500.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320259.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517535.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009320261.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744504.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744505.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744506.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744507.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517533.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744509.1
COORDINATES: similar to AA sequence:RefSeq:WP_015517532.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015517531.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744512.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744513.1
COORDINATES: similar to AA sequence:RefSeq:WP_009320273.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744516.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015517526.1
GO:0004386 - helicase activity [Evidence IEA]