Jaculus jaculus isolate mJacJac1 chromosome 20, mJacJac1.mat.Y.cur, whole genome shotgun sequence.
Jaculus jaculus (lesser Egyptian jerboa)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036408.1.\nAssembly name: mJacJac1.mat.Y.cur\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJGSA000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 2021\nAssembly Method :: Trio HiCanu v. 2.1; purge_dups v. 1.2.3;\n Scaff10x v. 4.2; Bionano Solve v. 3.5.1;\n bwa v. 0.7.17; gcpp v. 1.9.0; Longranger\n Align v. 2.2.2; Freebayes v. 1.3.2; gEVAL\n manual curation v. 2021-05--07\nAssembly Name :: mJacJac1.mat.Y.cur\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.0x\nSequencing Technology :: PacBio Sequel II CLR 101X; 10X Gemonics\n linked reads 78X; Bionano Genomics DLS\n 182X; Arima Genomics Hi-C v1 60X\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Jaculus jaculus Annotation Release\n 102\nAnnotation Version :: 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 883-like, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
zinc finger protein 883-like, transcript variant X1
terminal nucleotidyltransferase 4A, transcript variant X2
terminal nucleotidyltransferase 4A, transcript variant X1
terminal nucleotidyltransferase 4A isoform X2
terminal nucleotidyltransferase 4A isoform X1
steroid 5 alpha-reductase 1, transcript variant X2
steroid 5 alpha-reductase 1, transcript variant X1
3-oxo-5-alpha-steroid 4-dehydrogenase 1 isoform X2
3-oxo-5-alpha-steroid 4-dehydrogenase 1 isoform X1
RNA cytosine C(5)-methyltransferase NSUN2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
ubiquitin conjugating enzyme E2 Q family like 1
ubiquitin-conjugating enzyme E2Q-like protein 1
basic salivary proline-rich protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
mediator of RNA polymerase II transcription subunit 10
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
interactor of little elongation complex ELL subunit 1, transcript variant X1
interactor of little elongation complex ELL subunit 1, transcript variant X4
little elongation complex subunit 1 isoform X1
little elongation complex subunit 1 isoform X3
interactor of little elongation complex ELL subunit 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
interactor of little elongation complex ELL subunit 1, transcript variant X3
little elongation complex subunit 1 isoform X2
ADAM metallopeptidase with thrombospondin type 1 motif 16, transcript variant X4
ADAM metallopeptidase with thrombospondin type 1 motif 16, transcript variant X3
ADAM metallopeptidase with thrombospondin type 1 motif 16, transcript variant X1
A disintegrin and metalloproteinase with thrombospondin motifs 16 isoform X4
A disintegrin and metalloproteinase with thrombospondin motifs 16 isoform X3
A disintegrin and metalloproteinase with thrombospondin motifs 16 isoform X1
ADAM metallopeptidase with thrombospondin type 1 motif 16, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
A disintegrin and metalloproteinase with thrombospondin motifs 16 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 39% coverage of the annotated genomic feature by RNAseq alignments
microtubule associated serine/threonine kinase family member 4, transcript variant X1
microtubule associated serine/threonine kinase family member 4, transcript variant X2
microtubule associated serine/threonine kinase family member 4, transcript variant X3
microtubule-associated serine/threonine-protein kinase 4 isoform X1
microtubule-associated serine/threonine-protein kinase 4 isoform X2
microtubule-associated serine/threonine-protein kinase 4 isoform X3
microtubule associated serine/threonine kinase family member 4, transcript variant X7
microtubule associated serine/threonine kinase family member 4, transcript variant X10
microtubule associated serine/threonine kinase family member 4, transcript variant X4
microtubule associated serine/threonine kinase family member 4, transcript variant X5
microtubule-associated serine/threonine-protein kinase 4 isoform X4
microtubule-associated serine/threonine-protein kinase 4 isoform X5
microtubule-associated serine/threonine-protein kinase 4 isoform X7
microtubule-associated serine/threonine-protein kinase 4 isoform X10
microtubule associated serine/threonine kinase family member 4, transcript variant X6
microtubule associated serine/threonine kinase family member 4, transcript variant X11
microtubule-associated serine/threonine-protein kinase 4 isoform X6
microtubule-associated serine/threonine-protein kinase 4 isoform X11
microtubule associated serine/threonine kinase family member 4, transcript variant X8
microtubule associated serine/threonine kinase family member 4, transcript variant X9
microtubule associated serine/threonine kinase family member 4, transcript variant X13
microtubule-associated serine/threonine-protein kinase 4 isoform X8
microtubule-associated serine/threonine-protein kinase 4 isoform X9
microtubule-associated serine/threonine-protein kinase 4 isoform X13
microtubule associated serine/threonine kinase family member 4, transcript variant X12
microtubule-associated serine/threonine-protein kinase 4 isoform X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
phosphoinositide-3-kinase regulatory subunit 1, transcript variant X1
phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1
phosphoinositide-3-kinase regulatory subunit 1, transcript variant X3
phosphatidylinositol 3-kinase regulatory subunit alpha isoform X3
phosphoinositide-3-kinase regulatory subunit 1, transcript variant X2
phosphatidylinositol 3-kinase regulatory subunit alpha isoform X2
uncharacterized LOC123456247, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123456247, transcript variant X1
uncharacterized LOC123456254, transcript variant X2
uncharacterized LOC123456254, transcript variant X1
small nucleolar RNA SNORA2/SNORA34 family
COORDINATES: nucleotide motif:Rfam:12.0:RF00410
peroxisomal multifunctional enzyme type 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
zinc finger CCHC domain-containing protein 10
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
centrosomal protein 72, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
centrosomal protein 72, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
centrosomal protein of 72 kDa isoform X1
centrosomal protein of 72 kDa isoform X2
tubulin polymerization promoting protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
tubulin polymerization promoting protein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
tubulin polymerization promoting protein, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
tubulin polymerization promoting protein, transcript variant X3
tubulin polymerization-promoting protein isoform X1
tubulin polymerization-promoting protein isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: palmitoyltransferase ZDHHC11
bromodomain containing 9, transcript variant X3
bromodomain containing 9, transcript variant X2
bromodomain containing 9, transcript variant X1
bromodomain-containing protein 9 isoform X3
bromodomain-containing protein 9 isoform X2
bromodomain-containing protein 9 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
NKD inhibitor of WNT signaling pathway 2
COORDINATES: nucleotide motif:Rfam:12.0:RF00012
solute carrier family 12 member 7, transcript variant X1
solute carrier family 12 member 7, transcript variant X2
solute carrier family 12 member 7 isoform X2
solute carrier family 12 member 7 isoform X1
solute carrier family 6 member 19, transcript variant X1
sodium-dependent neutral amino acid transporter B(0)AT1 isoform X1
solute carrier family 6 member 19, transcript variant X2
sodium-dependent neutral amino acid transporter B(0)AT1 isoform X2
solute carrier family 6 member 18, transcript variant X1
solute carrier family 6 member 18, transcript variant X2
inactive sodium-dependent neutral amino acid transporter B(0)AT3 isoform X1
inactive sodium-dependent neutral amino acid transporter B(0)AT3 isoform X2
telomerase reverse transcriptase, transcript variant X2
telomerase reverse transcriptase, transcript variant X1
telomerase reverse transcriptase isoform X2
telomerase reverse transcriptase isoform X1
cleft lip and palate transmembrane protein 1-like protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
lysophosphatidylcholine acyltransferase 1
mitochondrial ribosomal protein L36, transcript variant X2
mitochondrial ribosomal protein L36, transcript variant X1
39S ribosomal protein L36, mitochondrial
NADH:ubiquinone oxidoreductase subunit S6, transcript variant X1
NADH:ubiquinone oxidoreductase subunit S6, transcript variant X2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial isoform X1
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
iroquois-class homeodomain protein IRX-4
iroquois homeobox 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
iroquois homeobox 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
iroquois-class homeodomain protein IRX-2
voltage-dependent anion-selective channel protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
iroquois-class homeodomain protein IRX-1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 140 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein 420-like, transcript variant X3
zinc finger protein 420-like, transcript variant X2
zinc finger protein 420-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: zinc finger protein 33B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 110 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: zinc finger protein 585A-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 2 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 3% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 136 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00015
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 128 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: vomeronasal type-2 receptor 116-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 Proteins, and 3% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 75 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 88 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein C14orf119 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123456268, transcript variant X2
uncharacterized LOC123456268, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123456268, transcript variant X5
uncharacterized LOC123456268, transcript variant X4
uncharacterized LOC123456268, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 71% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
splicing regulatory glutamic acid and lysine rich protein 1, transcript variant X1
splicing regulatory glutamic acid and lysine rich protein 1, transcript variant X2
splicing regulatory glutamine/lysine-rich protein 1 isoform X1
splicing regulatory glutamine/lysine-rich protein 1 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
erbb2 interacting protein, transcript variant X2
erbb2 interacting protein, transcript variant X8
erbb2 interacting protein, transcript variant X1
erbb2 interacting protein, transcript variant X9
erbb2 interacting protein, transcript variant X7
erbb2 interacting protein, transcript variant X3
erbb2 interacting protein, transcript variant X6
erbb2 interacting protein, transcript variant X4
erbb2 interacting protein, transcript variant X5
small glutamine rich tetratricopeptide repeat co-chaperone beta, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
small glutamine rich tetratricopeptide repeat co-chaperone beta, transcript variant X1
small glutamine rich tetratricopeptide repeat co-chaperone beta, transcript variant X3
small glutamine rich tetratricopeptide repeat co-chaperone beta, transcript variant X4
small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1
small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X2
small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X3
trafficking protein particle complex subunit 13, transcript variant X2
trafficking protein particle complex subunit 13, transcript variant X1
trafficking protein particle complex subunit 13 isoform X2
trafficking protein particle complex subunit 13 isoform X1
shieldin complex subunit 3, transcript variant X1
shieldin complex subunit 3, transcript variant X2
peptidylprolyl isomerase domain and WD repeat containing 1, transcript variant X1
peptidylprolyl isomerase domain and WD repeat containing 1, transcript variant X4
peptidylprolyl isomerase domain and WD repeat containing 1, transcript variant X3
peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1
peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X3
peptidylprolyl isomerase domain and WD repeat containing 1, transcript variant X2
peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X2
centromere protein K, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
centromere protein K, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
centromere protein K, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
centromere protein K, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ADAM metallopeptidase with thrombospondin type 1 motif 6, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ADAM metallopeptidase with thrombospondin type 1 motif 6, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ADAM metallopeptidase with thrombospondin type 1 motif 6, transcript variant X3
A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X1
A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X2
A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X3
ADAM metallopeptidase with thrombospondin type 1 motif 6, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
A disintegrin and metalloproteinase with thrombospondin motifs 6 isoform X4
CWC27 spliceosome associated cyclophilin
spliceosome-associated protein CWC27 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
regulator of G protein signaling 7 binding protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
regulator of G-protein signaling 7-binding protein
mannosylglucosyl-3-phosphoglycerate phosphatase-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: mannosylglucosyl-3-phosphoglycerate phosphatase-like
ring finger protein 180, transcript variant X4
ring finger protein 180, transcript variant X3
ring finger protein 180, transcript variant X2
ring finger protein 180, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 72% coverage of the annotated genomic feature by RNAseq alignments
leucine-rich repeat-containing protein 70
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
DIM1 rRNA methyltransferase and ribosome maturation factor, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
DIM1 rRNA methyltransferase and ribosome maturation factor, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
DIM1 rRNA methyltransferase and ribosome maturation factor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
probable dimethyladenosine transferase isoform X1
probable dimethyladenosine transferase isoform X2
probable dimethyladenosine transferase isoform X4
DIM1 rRNA methyltransferase and ribosome maturation factor, transcript variant X3
probable dimethyladenosine transferase isoform X3
kinesin family member 2A, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
kinesin family member 2A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
kinesin family member 2A, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
kinesin family member 2A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00438
COORDINATES: nucleotide motif:Rfam:12.0:RF00400
zinc finger SWIM domain-containing protein 6
small integral membrane protein 15, transcript variant X2
small integral membrane protein 15, transcript variant X5
small integral membrane protein 15, transcript variant X1
small integral membrane protein 15, transcript variant X3
small integral membrane protein 15, transcript variant X4
NADH:ubiquinone oxidoreductase complex assembly factor 2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2
uncharacterized LOC123456263, transcript variant X2
uncharacterized LOC123456263, transcript variant X3
uncharacterized LOC123456263, transcript variant X1
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
COORDINATES: nucleotide motif:Rfam:12.0:RF01233
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
elongation of very long chain fatty acids protein 7
DEP domain containing 1B, transcript variant X1
DEP domain containing 1B, transcript variant X2
DEP domain-containing protein 1B isoform X1
DEP domain-containing protein 1B isoform X2
COORDINATES: nucleotide motif:Rfam:12.0:RF00561
phosphodiesterase 4D, transcript variant X2
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X2
phosphodiesterase 4D, transcript variant X1
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X1
phosphodiesterase 4D, transcript variant X3
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X3
phosphodiesterase 4D, transcript variant X6
phosphodiesterase 4D, transcript variant X5
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X5
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X6
phosphodiesterase 4D, transcript variant X4
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X4
phosphodiesterase 4D, transcript variant X8
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X8
phosphodiesterase 4D, transcript variant X7
cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
RAB3C, member RAS oncogene family, transcript variant X3
RAB3C, member RAS oncogene family, transcript variant X2
RAB3C, member RAS oncogene family, transcript variant X1
GRB2 binding adaptor protein, transmembrane
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 8% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
GC-rich promoter binding protein 1, transcript variant X3
GC-rich promoter binding protein 1, transcript variant X1
GC-rich promoter binding protein 1, transcript variant X2
COORDINATES: nucleotide motif:Rfam:12.0:RF01210
MIER family member 3, transcript variant X6
MIER family member 3, transcript variant X3
MIER family member 3, transcript variant X4
MIER family member 3, transcript variant X5
mesoderm induction early response protein 3 isoform X3
mesoderm induction early response protein 3 isoform X4
MIER family member 3, transcript variant X1
MIER family member 3, transcript variant X2
mesoderm induction early response protein 3 isoform X1
mesoderm induction early response protein 3 isoform X2
mesoderm induction early response protein 3 isoform X5
SET domain containing 9, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
SET domain containing 9, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
mitogen-activated protein kinase kinase kinase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00272
ankyrin repeat domain 55, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ankyrin repeat domain 55, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ankyrin repeat domain-containing protein 55 isoform X1
ankyrin repeat domain-containing protein 55 isoform X2
ankyrin repeat domain 55, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ankyrin repeat domain-containing protein 55 isoform X3
interleukin 6 cytokine family signal transducer, transcript variant X1
interleukin 6 cytokine family signal transducer, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
transcription initiation factor TFIID subunit 12-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
DEAD-box helicase 4, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
DEAD-box helicase 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
DEAD-box helicase 4, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
DEAD-box helicase 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
DEAD-box helicase 4, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
DEAD-box helicase 4, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
probable ATP-dependent RNA helicase DDX4 isoform X5
probable ATP-dependent RNA helicase DDX4 isoform X1
probable ATP-dependent RNA helicase DDX4 isoform X6
probable ATP-dependent RNA helicase DDX4 isoform X4
probable ATP-dependent RNA helicase DDX4 isoform X3
probable ATP-dependent RNA helicase DDX4 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 75% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
solute carrier family 38 member 9, transcript variant X3
solute carrier family 38 member 9, transcript variant X2
solute carrier family 38 member 9, transcript variant X1
sodium-coupled neutral amino acid transporter 9 isoform X1
sodium-coupled neutral amino acid transporter 9 isoform X2
sodium-coupled neutral amino acid transporter 9 isoform X3
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
phospholipid phosphatase 1, transcript variant X1
phospholipid phosphatase 1, transcript variant X2
phospholipid phosphatase 1, transcript variant X3
DExH-box helicase 29, transcript variant X2
DExH-box helicase 29, transcript variant X1
ATP-dependent RNA helicase DHX29 isoform X1
ATP-dependent RNA helicase DHX29 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
multiciliate differentiation and DNA synthesis associated cell cycle protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 74% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
multiciliate differentiation and DNA synthesis associated cell cycle protein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
glutathione peroxidase 8 (putative), transcript variant X2
glutathione peroxidase 8 (putative), transcript variant X1
probable glutathione peroxidase 8 isoform X1
probable glutathione peroxidase 8 isoform X2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
heat shock protein family B (small) member 3
ADP ribosylation factor like GTPase 15, transcript variant X1
ADP ribosylation factor like GTPase 15, transcript variant X2
ADP-ribosylation factor-like protein 15 isoform X1
ADP-ribosylation factor-like protein 15 isoform X2
COORDINATES: nucleotide motif:Rfam:12.0:RF00421
NADH:ubiquinone oxidoreductase subunit S4
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
molybdenum cofactor synthesis 2, transcript variant X1
molybdenum cofactor synthesis 2, transcript variant X2
molybdopterin synthase catalytic subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pelota mRNA surveillance and ribosome rescue factor, transcript variant X2
pelota mRNA surveillance and ribosome rescue factor, transcript variant X1
uncharacterized LOC123456251, transcript variant X2
uncharacterized LOC123456251, transcript variant X1
poly(ADP-ribose) polymerase family member 8, transcript variant X2
poly(ADP-ribose) polymerase family member 8, transcript variant X4
poly(ADP-ribose) polymerase family member 8, transcript variant X3
poly(ADP-ribose) polymerase family member 8, transcript variant X1
protein mono-ADP-ribosyltransferase PARP8 isoform X1
protein mono-ADP-ribosyltransferase PARP8 isoform X2
protein mono-ADP-ribosyltransferase PARP8 isoform X3
protein mono-ADP-ribosyltransferase PARP8 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
hyperpolarization activated cyclic nucleotide gated potassium channel 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
COORDINATES: nucleotide motif:Rfam:12.0:RF00408
39S ribosomal protein S30, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
nicotinamide nucleotide transhydrogenase, transcript variant X1
nicotinamide nucleotide transhydrogenase, transcript variant X3
nicotinamide nucleotide transhydrogenase, transcript variant X2
poly(A) binding protein interacting protein 1
polyadenylate-binding protein-interacting protein 1
chromosome 20 C5orf34 homolog, transcript variant X3
chromosome 20 C5orf34 homolog, transcript variant X5
chromosome 20 C5orf34 homolog, transcript variant X4
chromosome 20 C5orf34 homolog, transcript variant X7
chromosome 20 C5orf34 homolog, transcript variant X6
chromosome 20 C5orf34 homolog, transcript variant X8
chromosome 20 C5orf34 homolog, transcript variant X1
chromosome 20 C5orf34 homolog, transcript variant X9
chromosome 20 C5orf34 homolog, transcript variant X2
chromosome 20 C5orf34 homolog, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized protein C5orf34 homolog isoform X1
uncharacterized protein C5orf34 homolog isoform X4
uncharacterized protein C5orf34 homolog isoform X2
uncharacterized protein C5orf34 homolog isoform X3
transmembrane protein 267, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transmembrane protein 267, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
C-C motif chemokine ligand 28, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
C-C motif chemokine ligand 28, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
C-C motif chemokine ligand 28, transcript variant X1
3-hydroxy-3-methylglutaryl-CoA synthase 1, transcript variant X2
3-hydroxy-3-methylglutaryl-CoA synthase 1, transcript variant X1
hydroxymethylglutaryl-CoA synthase, cytoplasmic
phosphopantothenate--cysteine ligase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein 131, transcript variant X2
zinc finger protein 131, transcript variant X3
zinc finger protein 131, transcript variant X1
zinc finger protein 131, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
uncharacterized LOC123456299, transcript variant X2
uncharacterized LOC123456299, transcript variant X1
phosphatidylinositol specific phospholipase C X domain containing 1