Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG2, complete sequence.
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Candidatus Azobacteroides.
Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut
Submitted (21-MAR-2008) Contact:Atsushi Toyoda National Institute of Genetics, Comparative Genomics Laboratory; Yata 1111, Mishima, Shizuoka 411-8540, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP010658.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/14/2022 11:33:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,048\nCDSs (total) :: 1,004\nGenes (coding) :: 994\nCDSs (with protein) :: 994\nGenes (RNA) :: 44\nrRNAs :: 1, 2, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 2, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 2\nPseudo Genes (total) :: 10\nCDSs (without protein) :: 10\nPseudo Genes (ambiguous residues) :: 0 of 10\nPseudo Genes (frameshifted) :: 4 of 10\nPseudo Genes (incomplete) :: 5 of 10\nPseudo Genes (internal stop) :: 3 of 10\nPseudo Genes (multiple problems) :: 2 of 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
a single cell of termite (Coptotermes formosanus) gut protist
Pseudotrichonympha grassii (protist) in the gut of the termite Coptotermes formosanus
COORDINATES: similar to AA sequence:RefSeq:WP_012572994.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012572989.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012572991.1
COORDINATES: protein motif:HMM:NF017470.2
COORDINATES: similar to AA sequence:RefSeq:WP_012572963.1
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: protein motif:HMM:NF013930.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012573724.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573004.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573005.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573006.1
COORDINATES: similar to AA sequence:RefSeq:WP_012572976.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573012.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573016.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573017.1
COORDINATES: similar to AA sequence:RefSeq:WP_012572953.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573019.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012572955.1
COORDINATES: similar to AA sequence:RefSeq:WP_012573022.1
COORDINATES: protein motif:HMM:NF018476.2
GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
type II toxin-antitoxin system YoeB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012573024.1