Alcaligenes faecalis strain ZD02 plasmid pZD02, complete sequence.
type: Entry
definition: Alcaligenes faecalis strain ZD02 plasmid pZD02, complete sequence.
sequence version: NZ_CP013143.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP013143.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03379009
keyword: RefSeq
source: Alcaligenes faecalis
organism: Alcaligenes faecalis
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP013143.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:25:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,871\nCDSs (total) :: 3,801\nGenes (coding) :: 3,784\nCDSs (with protein) :: 3,784\nGenes (RNA) :: 70\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 4 of 17\nPseudo Genes (incomplete) :: 12 of 17\nPseudo Genes (internal stop) :: 3 of 17\nPseudo Genes (multiple problems) :: 2 of 17\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14928
topology: circular
so has quality: SO_0000988
location: 1..14928
location: region:1-14928:1
RO_0002162: 511

NZ_CP013143
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03379009
type: BioSample
SIO_000068: biosample

1
title: The complete genome sequence of Alcaligenes faecalis ZD02, a novel potential bionematocide
author: Ju, S.
author: Zheng, J.
author: Sun, M.
journal: Unpublished

2
title: Direct Submission
author: Ju, S.
author: Zheng, J.
author: Sun, M.
journal: Submitted (10-NOV-2015) College of Life Sciences and Technology, State Key Laboratory of Agricultural Microbiology, No. 1 Shizishan Street, Hongshan District, Wuhan, Hubei 430070, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14928:1
position: 14928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14928:1:source
so part of: sequence
organism: Alcaligenes faecalis
mol type: genomic DNA
strain: ZD02
host: nematode
plasmid: pZD02
country: China: Wuhan, Hubei
altitude: 20 m
collection date: 2011-10-23
collected by: Jinshui Zheng

511
type: Taxonomy
SIO_000068: taxonomy

UZ73_RS19165
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19165
old locus tag: UZ73_19160
pseudo: true
so part of: sequence
location: 6..844
location: region:6-844:1
so has part: feature:6-844:1:exon
subclass of: SO_0000010

29371622
type: Gene
SIO_000068: ncbigene

position:6:1
position: 6
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:844:1
position: 844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6-844:1:exon

UZ73_RS19165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19165
old locus tag: UZ73_19160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001749984.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: AadA family aminoglycoside 3''-O-nucleotidyltransferase
SIO_010081: UZ73_RS19165
subclass of: SO_0000673
so part of: UZ73_RS19165
location: 6..844
location: region:6-844:1
so has part: feature:6-844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6-844:1:exon

UZ73_RS19170
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19170
old locus tag: UZ73_19165
so part of: sequence
location: 961..1308
location: region:961-1308:1
so has part: feature:961-1308:1:exon
subclass of: SO_0000010

29371631
type: Gene
SIO_000068: ncbigene

position:961:1
position: 961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1308:1
position: 1308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:961-1308:1:exon

UZ73_RS19170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19170
old locus tag: UZ73_19165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quaternary ammonium compound efflux SMR transporter QacE delta 1
translation: MKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAFYFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLARSPSWKSLRRPTPW
SIO_010081: UZ73_RS19170
subclass of: SO_0000673
so part of: UZ73_RS19170
location: 961..1308
location: region:961-1308:1
so has part: feature:961-1308:1:exon

WP_000679427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:961-1308:1:exon

UZ73_RS19175
type: Gene
subclass of: SO_0000704
RO_0002162: 511
gene: sul1
locus tag: UZ73_RS19175
old locus tag: UZ73_19170
so part of: sequence
location: 1302..2141
location: region:1302-2141:1
so has part: feature:1302-2141:1:exon
subclass of: SO_0000010

29371630
type: Gene
SIO_000068: ncbigene

position:1302:1
position: 1302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2141:1
position: 2141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1302-2141:1:exon

UZ73_RS19175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
gene: sul1
locus tag: UZ73_RS19175
old locus tag: UZ73_19170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfonamide-resistant dihydropteroate synthase Sul1
translation: MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRSRDARDRGLDHA
SIO_010081: UZ73_RS19175
subclass of: SO_0000673
so part of: UZ73_RS19175
location: 1302..2141
location: region:1302-2141:1
so has part: feature:1302-2141:1:exon

WP_000259031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1302-2141:1:exon

UZ73_RS19180
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19180
old locus tag: UZ73_19175
so part of: sequence
location: 2269..2769
location: region:2269-2769:1
so has part: feature:2269-2769:1:exon
subclass of: SO_0000010

29371629
type: Gene
SIO_000068: ncbigene

position:2269:1
position: 2269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2769:1
position: 2769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2269-2769:1:exon

UZ73_RS19180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19180
old locus tag: UZ73_19175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MDSEEPPNVRVACSGDIDEVVRLMHDAAAWMSAKGTPAWDVARIDRTFAETFVLRSELLVASCSDGIVGCCTLSAEDPEFWPDALKGEAAYLHKLAVRRTHAGRGVSSALIEACRHAARTQGCAKLRLDCHPNLRGLYERLGFTHVDTFNPGWDPTFIAERLELEI
SIO_010081: UZ73_RS19180
subclass of: SO_0000673
so part of: UZ73_RS19180
location: 2269..2769
location: region:2269-2769:1
so has part: feature:2269-2769:1:exon

WP_000376623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2269-2769:1:exon

UZ73_RS19835
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19835
pseudo: true
so part of: sequence
location: <3090..3158
location: region:3090-3158:1
so has part: feature:3090-3158:1:exon
subclass of: SO_0000010

60760061
type: Gene
SIO_000068: ncbigene

position:3090:1
position: 3090
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:3158:1
position: 3158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3090-3158:1:exon

UZ73_RS19835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19835
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: UZ73_RS19835
subclass of: SO_0000673
so part of: UZ73_RS19835
location: <3090..3158
location: region:3090-3158:1
so has part: feature:3090-3158:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3090-3158:1:exon

UZ73_RS19185
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19185
old locus tag: UZ73_19180
so part of: sequence
location: 3276..4040
location: region:3276-4040:1
so has part: feature:3276-4040:1:exon
subclass of: SO_0000010

29371628
type: Gene
SIO_000068: ncbigene

position:3276:1
position: 3276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4040:1
position: 4040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3276-4040:1:exon

UZ73_RS19185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19185
old locus tag: UZ73_19180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS6100 family transposase
translation: MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
SIO_010081: UZ73_RS19185
subclass of: SO_0000673
so part of: UZ73_RS19185
location: 3276..4040
location: region:3276-4040:1
so has part: feature:3276-4040:1:exon

WP_001389365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3276-4040:1:exon

UZ73_RS19195
type: Gene
subclass of: SO_0000704
RO_0002162: 511
gene: mphR(A)
locus tag: UZ73_RS19195
old locus tag: UZ73_19190
so part of: sequence
location: complement(4533..5117)
location: region:4533-5117:-1
so has part: feature:4533-5117:-1:exon
subclass of: SO_0000010

29371621
type: Gene
SIO_000068: ncbigene

position:4533:-1
position: 4533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5117:-1
position: 5117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4533-5117:-1:exon

UZ73_RS19195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
gene: mphR(A)
locus tag: UZ73_RS19195
old locus tag: UZ73_19190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001137892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: macrolide-binding transcriptional repressor MphR(A)
translation: MPRPKLKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPIGAGPQGLWEFLQVLVRSMNTRNDFSVNYLISWYELQVPELRTLAIQRNRAVVEGIRKRLPPGAPAAAELLLHSVIAGATMQWAVDPDGELADHVLAQIAAILCLMFPEHDDFQLLQAHA
SIO_010081: UZ73_RS19195
subclass of: SO_0000673
so part of: UZ73_RS19195
location: complement(4533..5117)
location: region:4533-5117:-1
so has part: feature:4533-5117:-1:exon

WP_001137892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4533-5117:-1:exon

UZ73_RS19200
type: Gene
subclass of: SO_0000704
RO_0002162: 511
alternative label: mrx
gene: mrx(A)
locus tag: UZ73_RS19200
old locus tag: UZ73_19195
gene synonym: mrx
so part of: sequence
location: complement(5117..6355)
location: region:5117-6355:-1
so has part: feature:5117-6355:-1:exon
subclass of: SO_0000010

29371620
type: Gene
SIO_000068: ncbigene

position:6355:-1
position: 6355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5117-6355:-1:exon

UZ73_RS19200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
alternative label: mrx
gene: mrx(A)
locus tag: UZ73_RS19200
old locus tag: UZ73_19195
gene synonym: mrx
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000004159.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: macrolide resistance MFS transporter Mrx(A)
translation: MSERRYSPLATLFAATFLFRIGNAVAALALPWFVLSHTKSAAWAGATAASSVIATIIGAWVGGGLVDRFGRAPVALISGVVGGVAMASIPLLDAVGALSNTGLIACVVLGAAFDAPGMAAQDSELPKLGHVAGLSVERVSSLKAVIGNVAILGGPALGGAAIGLLGAAPTLGLTAFCSVLAGLLGAWVLPARAARTMTTTATLSMRAGVAFLWSEPLLRPLFGIVMIFVGIVGANGSVIMPALFVDAGRQVAELGLFSSMMGAGGLLGIAIHASVGARISAQNWLAVAFCGSAVGSLLLSQLPGVPVLMLLGALVGLLTGSVSPILNAAIYNRTPPELLGRVLGTVSAVMLSASPMVMLAAGAFVDLAGPLPGLVVSAVFAGLVALLSLRLQFATMAAAATASAPTHTEGEH
SIO_010081: UZ73_RS19200
subclass of: SO_0000673
so part of: UZ73_RS19200
location: complement(5117..6355)
location: region:5117-6355:-1
so has part: feature:5117-6355:-1:exon

WP_000004159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5117-6355:-1:exon

UZ73_RS19205
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19205
old locus tag: UZ73_19200
so part of: sequence
location: complement(6352..7257)
location: region:6352-7257:-1
so has part: feature:6352-7257:-1:exon
subclass of: SO_0000010

29371619
type: Gene
SIO_000068: ncbigene

position:6352:-1
position: 6352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7257:-1
position: 7257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6352-7257:-1:exon

UZ73_RS19205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19205
old locus tag: UZ73_19200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000219391.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mph(A) family macrolide 2'-phosphotransferase
translation: MTVVTTADTFQLYALAARHGLKLHGPLTVNELGLDYRIVIATVDDGRRWVLRIPRRAEVSAKVEPEARVLAMLKNRLPFAVPDWRVANAELVAYPMLEDSTAMVIQPGSSTPDWVVPQDSEVFAESFATALAALHAVPISAAVDAGMLIRTPTQARQKVADDVDRVRREFVVNDKRLHRWQRWLDDDSSWPDFSVVVHGDLYVGHVLIDNTERVSGMIDWSEARVDDPAIDMAAHLMVFGEEGLAKLLLTYEAAGGRVWPRLAHHIAERLAFGAVTYALFALDSGNEEYLAAAKAQLAAAE
SIO_010081: UZ73_RS19205
subclass of: SO_0000673
so part of: UZ73_RS19205
location: complement(6352..7257)
location: region:6352-7257:-1
so has part: feature:6352-7257:-1:exon

WP_000219387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6352-7257:-1:exon

UZ73_RS19210
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19210
old locus tag: UZ73_19205
so part of: sequence
location: 8354..8557
location: region:8354-8557:1
so has part: feature:8354-8557:1:exon
subclass of: SO_0000010

29371618
type: Gene
SIO_000068: ncbigene

position:8354:1
position: 8354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8557:1
position: 8557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8354-8557:1:exon

UZ73_RS19210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19210
old locus tag: UZ73_19205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016349635.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHPREFIAKHIKATLEKEEFPPHAVSLGVKEATFFFDRTPSFAKGKVFDECLKAARAVARVAKKAKP
SIO_010081: UZ73_RS19210
subclass of: SO_0000673
so part of: UZ73_RS19210
location: 8354..8557
location: region:8354-8557:1
so has part: feature:8354-8557:1:exon

WP_000553518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8354-8557:1:exon

UZ73_RS19215
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19215
old locus tag: UZ73_19210
so part of: sequence
location: complement(8863..9867)
location: region:8863-9867:-1
so has part: feature:8863-9867:-1:exon
subclass of: SO_0000010

29371626
type: Gene
SIO_000068: ncbigene

position:8863:-1
position: 8863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9867:-1
position: 9867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8863-9867:-1:exon

UZ73_RS19215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19215
old locus tag: UZ73_19210
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110-like element IS5075 family transposase
translation: MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLATCPATTIAMEACGGSHFMARKLAELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISRLSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRELLCRKSNFVVTCALANKLARIAWALTARQQTYEA
SIO_010081: UZ73_RS19215
subclass of: SO_0000673
so part of: UZ73_RS19215
location: complement(8863..9867)
location: region:8863-9867:-1
so has part: feature:8863-9867:-1:exon

WP_000427614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8863-9867:-1:exon

UZ73_RS19220
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19220
old locus tag: UZ73_19215
so part of: sequence
location: complement(9946..12918)
location: region:9946-12918:-1
so has part: feature:9946-12918:-1:exon
subclass of: SO_0000010

29371625
type: Gene
SIO_000068: ncbigene

position:9946:-1
position: 9946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12918:-1
position: 12918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9946-12918:-1:exon

UZ73_RS19220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19220
old locus tag: UZ73_19215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001138064.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRSILSATERESLLALPDAKDELIRHYTFNETDLSVIRQRRGAANRLGFAVQLCYLRFPGTFLGVDEPPFPPLLRMVAAQLKMPVESWSEYGQREQTRREHLVELQTVFGFKPFTMSHYRQAVHTLTELALQTDKGIVLASALVENLRRQSIILPAMNAIERASAEAITRANRRIYAALTDSLLSPHRQRLDELLKRKDGSKVTWLAWLRQSPAKPNSRHMLEHIERLKSWQALDLPAGIERQVHQNRLLKIAREGGQMTPADLAKFEVQRRYATLVALAIEGMATVTDEIIDLHDRIIGKLFNAAKNKHQQQFQASGKAINDKVRMYGRIGQALIEAKQSGSDPFAAIEAVMPWDTFAASVTEAQTLARPADFDFLHHIGESYATLRRYAPQFLGVLKLRAAPAAKGVLDAIDMLRGMNSDSARKVPADAPTAFIKPRWAKLVLTDDGIDRRYYELCALSELKNALRSGDVWVQGSRQFKDFDEYLVPVEKFATLKLASELPLAVATDCDQYLHDRLELLEAQLATVNRMAAANDLPDAIITTASGLKITPLDAAVPDAAQAMIDQTAMLLPHLKITELLMEVDEWTGFTRHFTHLKTSDTAKDKTLLLTTILADAINLGLTKMAESCPGTTYAKLSWLQAWHIRDETYSTALAELVNAQFRQPFAGNWGDGTTSSSDGQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPFSAKVVNVGIRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGETKLFIPKGDAAYDALKPMISSDRLNIKQIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFYRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATSALRGNGTALDDTLLQYLSPLGWEHINLTGDYLWRSSAKVGAGKFRPLRPLPPA
SIO_010081: UZ73_RS19220
subclass of: SO_0000673
so part of: UZ73_RS19220
location: complement(9946..12918)
location: region:9946-12918:-1
so has part: feature:9946-12918:-1:exon

WP_001138073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9946-12918:-1:exon

UZ73_RS19225
type: Gene
subclass of: SO_0000704
RO_0002162: 511
locus tag: UZ73_RS19225
old locus tag: UZ73_19220
so part of: sequence
location: complement(12921..13478)
location: region:12921-13478:-1
so has part: feature:12921-13478:-1:exon
subclass of: SO_0000010

29371624
type: Gene
SIO_000068: ncbigene

position:12921:-1
position: 12921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13478:-1
position: 13478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12921-13478:-1:exon

UZ73_RS19225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
locus tag: UZ73_RS19225
old locus tag: UZ73_19220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016236504.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MQGQRIGYVRVSSFDQNPERQLEGVQVARVFTDKASGKDTQRPELERLLAFVREGDTVVVHSMDRLARNLDDLRRIVQGLTQRGVRMEFVKEGLKFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIVLAKQRGAYRGRKKSLNSEQIAELKRRVAAGDQKTLVARDFGISRETLYQYLRED
SIO_010081: UZ73_RS19225
subclass of: SO_0000673
so part of: UZ73_RS19225
location: complement(12921..13478)
location: region:12921-13478:-1
so has part: feature:12921-13478:-1:exon

WP_001162012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12921-13478:-1:exon

UZ73_RS19230
type: Gene
subclass of: SO_0000704
RO_0002162: 511
gene: intI1
locus tag: UZ73_RS19230
old locus tag: UZ73_19225
so part of: sequence
location: complement(13775..14788)
location: region:13775-14788:-1
so has part: feature:13775-14788:-1:exon
subclass of: SO_0000010

29371623
type: Gene
SIO_000068: ncbigene

position:13775:-1
position: 13775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14788:-1
position: 14788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13775-14788:-1:exon

UZ73_RS19230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 511
gene: intI1
locus tag: UZ73_RS19230
old locus tag: UZ73_19225
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class 1 integron integrase IntI1
translation: MKTATAPLPPLRSVKVLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
SIO_010081: UZ73_RS19230
subclass of: SO_0000673
so part of: UZ73_RS19230
location: complement(13775..14788)
location: region:13775-14788:-1
so has part: feature:13775-14788:-1:exon

WP_000845039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13775-14788:-1:exon