Alcaligenes faecalis strain ZD02 plasmid pZD02, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.
The complete genome sequence of Alcaligenes faecalis ZD02, a novel potential bionematocide
Submitted (10-NOV-2015) College of Life Sciences and Technology, State Key Laboratory of Agricultural Microbiology, No. 1 Shizishan Street, Hongshan District, Wuhan, Hubei 430070, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP013143.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:25:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,871\nCDSs (total) :: 3,801\nGenes (coding) :: 3,784\nCDSs (with protein) :: 3,784\nGenes (RNA) :: 70\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 4 of 17\nPseudo Genes (incomplete) :: 12 of 17\nPseudo Genes (internal stop) :: 3 of 17\nPseudo Genes (multiple problems) :: 2 of 17\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_001749984.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
AadA family aminoglycoside 3''-O-nucleotidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
quaternary ammonium compound efflux SMR transporter QacE delta 1
COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
sulfonamide-resistant dihydropteroate synthase Sul1
COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS6100 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001137892.1
macrolide-binding transcriptional repressor MphR(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000004159.1
macrolide resistance MFS transporter Mrx(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000219391.1
Mph(A) family macrolide 2'-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016349635.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1
IS110-like element IS5075 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001138064.1
COORDINATES: similar to AA sequence:RefSeq:WP_016236504.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1