Toxoplasma gondii ME49 chromosome V, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma.
Submitted (18-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (25-APR-2013) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
ABPA02000001 and ABPA02000002 sequences updated by submitter
Submitted (31-JUL-2012) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM002039.\nThis work was supported by the National Institute of Allergy and\nInfectious Diseases (NIAID), Genome Sequencing Centers for\nInfectious Diseases (GSCID) program. This sequence record is\nco-owned by JCVI and EuPathDB. Additional Toxoplasma gondii\nresources are available at ToxoDB, http://toxodb.org/toxo/ and at\nJCVI, http://gsc.jcvi.org/projects/gsc/t_gondii/index.shtml.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1.92\nAssembly Name :: TGA4\nGenome Coverage :: 26.55x\nSequencing Technology :: 454 GS FLX Titanium; Sanger\n##Genome-Assembly-Data-END##
encoded by transcript TGME49_220080; Predicted trans-membrane domain (TMHMM2.0):52-72:266-289
encoded by transcript TGME49_220190; Signal peptide predicted by SignalP 2.0 HMM (probability 0.468) with cleavage site probability 0.190 at residue 29; Predicted trans-membrane domain (TMHMM2.0):539-559
encoded by transcript TGME49_220240; Signal peptide predicted by SignalP 2.0 HMM (probability 0.911) with cleavage site probability 0.490 at residue 33; Predicted trans-membrane domain (TMHMM2.0):9-29:78-101
Nucleotide-sensitive chloride conductance regulator (ICln) protein
alveolin domain containing intermediate filament IMC6
encoded by transcript TGME49_220270; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_220280; Signal peptide predicted by SignalP 2.0 HMM (probability 0.788) with cleavage site probability 0.478 at residue 24
encoded by transcript TGME49_220300; Signal peptide predicted by SignalP 2.0 HMM (probability 0.786) with cleavage site probability 0.555 at residue 31; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_220310; Predicted trans-membrane domain (TMHMM2.0):134-153
encoded by transcript TGME49_220330; Signal peptide predicted by SignalP 2.0 HMM (probability 0.924) with cleavage site probability 0.767 at residue 41; Predicted trans-membrane domain (TMHMM2.0):297-320:396-419:433-456
encoded by transcript TGME49_220340; Predicted trans-membrane domain (TMHMM2.0):148-171:190-213:300-320:359-382
tRNA ligases class II (D, K and N) domain-containing protein
encoded by transcript TGME49_220350; Predicted trans-membrane domain (TMHMM2.0):28-51
encoded by transcript TGME49_220380; Predicted trans-membrane domain (TMHMM2.0):1026-1046
encoded by transcript TGME49_220390; Predicted trans-membrane domain (TMHMM2.0):23-46:60-80:100-123:137-160
encoded by transcript TGME49_220400; Gene product name based on ToxoDB Community Expert Annotation.
3'5'-cyclic nucleotide phosphodiesterase domain-containing protein
encoded by transcript TGME49_220420; Predicted trans-membrane domain (TMHMM2.0):210-233:247-270:276-299:308-331:337-360
cyclin-dependent kinase regulatory subunit protein
pre-rRNA-processing protein PNO1, putative
encoded by transcript TGME49_220525; Predicted trans-membrane domain (TMHMM2.0):55-78
encoded by transcript TGME49_220540; Predicted trans-membrane domain (TMHMM2.0):112-135:138-161
encoded by transcript TGME49_220560; Predicted trans-membrane domain (TMHMM2.0):61-84:220-240:254-277:312-335:372-392
encoded by transcript TGME49_220570; Predicted trans-membrane domain (TMHMM2.0):78-101
protein phosphatase 2C domain-containing protein
encoded by transcript TGME49_287430; 3' partial because of sequencing gap, protein match to GenBank: EEE30670.1
encoded by transcript TGME49_287460; Signal peptide predicted by SignalP 2.0 HMM (probability 0.909) with cleavage site probability 0.639 at residue 28
encoded by transcript TGME49_287470; 5' and 3' partial because of sequencing gaps, supported by RNAseq.
encoded by transcript TGME49_212740; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_212850; Signal peptide predicted by SignalP 2.0 HMM (probability 0.868) with cleavage site probability 0.332 at residue 27
surface antigen repeat-containing protein
encoded by transcript TGME49_212910; Gene product name based on ToxoDB Community Expert Annotation.; Predicted trans-membrane domain (TMHMM2.0):37-60:66-84:88-111:122-145:148-171:177-196:200- 218
ADP-ribosylation factor family protein 2, putative
protein kinase (incomplete catalytic triad)
encoded by transcript TGME49_212980; Predicted trans-membrane domain (TMHMM2.0):693-713
replication factor C, subunit 5, putative
WD domain, G-beta repeat-containing protein
encoded by transcript TGME49_213067; Signal peptide predicted by SignalP 2.0 HMM (probability 0.979) with cleavage site probability 0.971 at residue 20; Predicted trans-membrane domain (TMHMM2.0):189-209
encoded by transcript TGME49_213100; Predicted trans-membrane domain (TMHMM2.0):54-77
encoded by transcript TGME49_213240; Predicted trans-membrane domain (TMHMM2.0):698-721
encoded by transcript TGME49_213280; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.584 at residue 25
encoded by transcript TGME49_213310; Predicted trans-membrane domain (TMHMM2.0):3-26:34-52
encoded by transcript TGME49_213325; Predicted trans-membrane domain (TMHMM2.0):667-690:696-719
encoded by transcript TGME49_213370; Gene product name based on ToxoDB Community Expert Annotation.
zinc finger (CCCH type) motif-containing protein
small nuclear ribonucleoprotein f (snrnp-f), putative
encoded by transcript TGME49_213490; Predicted trans-membrane domain (TMHMM2.0):190-213
encoded by transcript TGME49_213520; Signal peptide predicted by SignalP 2.0 HMM (probability 0.805) with cleavage site probability 0.235 at residue 41; Predicted trans-membrane domain (TMHMM2.0):18-41
DHHC zinc finger domain-containing protein
encoded by transcript TGME49_213550; Predicted trans-membrane domain (TMHMM2.0):32-55:59-82:172-202:222-245
encoded by transcript TGME49_213570; Predicted trans-membrane domain (TMHMM2.0):124-144:175-198:223-246:260-283
encoded by transcript TGME49_213610; Predicted trans-membrane domain (TMHMM2.0):928-951
encoded by transcript TGME49_213670; Predicted trans-membrane domain (TMHMM2.0):179-202
encoded by transcript TGME49_213746; Predicted trans-membrane domain (TMHMM2.0):11-34:73-93:113-136
Superkiller viralicidic activity 2 family 2, putative
encoded by transcript TGME49_213790; Predicted trans-membrane domain (TMHMM2.0):1097-1115:1119-1139
protein phosphatase 2b regulatory subunit, putative
encoded by transcript TGME49_213810; Product name based on PMID:17784785.
encoded by transcript TGME49_213840; Predicted trans-membrane domain (TMHMM2.0):110-133:281-304:310-333:361-384
encoded by transcript TGME49_213850; Predicted trans-membrane domain (TMHMM2.0):194-212:303-326
Myb family DNA-binding domain-containing protein
regulator of chromosome condensation RCC1
encoded by transcript TGME49_213900; Product name based on PMID:17535896.
encoded by transcript TGME49_213910; Signal peptide predicted by SignalP 2.0 HMM (probability 0.724) with cleavage site probability 0.184 at residue 106; Predicted trans-membrane domain (TMHMM2.0):32-55:59-82
3' exoribonuclease family, domain 1 domain-containing protein
ribosomal RNA small subunit methyltransferase B, putative
encoded by transcript TGME49_287270; Predicted trans-membrane domain (TMHMM2.0):86-109
encoded by transcript TGME49_287250; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.816 at residue 24
inorganic anion transporter, sulfate permease (SulP) family protein
proteasome subunit alpha2, protease of the acylase family and NTN hydrolase fold, putative
encoded by transcript TGME49_287200; Predicted trans-membrane domain (TMHMM2.0):74-92:119-142:154-177:191-209
encoded by transcript TGME49_287040; Signal peptide predicted by SignalP 2.0 HMM (probability 0.997) with cleavage site probability 0.643 at residue 22
ATPase family associated with various cellular activities (AAA) domain-containing protein
encoded by transcript TGME49_286790; Product name based on PMID:21483487.
encoded by transcript TGME49_286770; Signal peptide predicted by SignalP 2.0 HMM (probability 0.750) with cleavage site probability 0.342 at residue 36; Predicted trans-membrane domain (TMHMM2.0):9-32:56-79:117-140
encoded by transcript TGME49_286720; Product name based on PMID:16339717.
zinc finger, c2h2 type domain-containing protein
DNA/RNA-binding protein KIN17 domain-containing protein
encoded by transcript TGME49_286630; Signal peptide predicted by SignalP 2.0 HMM (probability 0.875) with cleavage site probability 0.642 at residue 57; Predicted trans-membrane domain (TMHMM2.0):30-53
S1 RNA binding domain-containing protein
encoded by transcript TGME49_286620; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_286610; Signal peptide predicted by SignalP 2.0 HMM (probability 0.775) with cleavage site probability 0.443 at residue 31
encoded by transcript TGME49_286590; Gene product name based on ToxoDB Community Expert Annotation. Microtubule associated protein SPM2(PMID:22021240).
encoded by transcript TGME49_286540; Signal peptide predicted by SignalP 2.0 HMM (probability 0.951) with cleavage site probability 0.558 at residue 20
encoded by transcript TGME49_286530; Signal peptide predicted by SignalP 2.0 HMM (probability 0.569) with cleavage site probability 0.145 at residue 38; Predicted trans-membrane domain (TMHMM2.0):129-152
encoded by transcript TGME49_286510; Predicted trans-membrane domain (TMHMM2.0):131-154:217-240:244-267:344-367:386-409
G protein-coupled receptor 89 isoform 5, putative
encoded by transcript TGME49_286470; Predicted member of protein kinase family AGC;PKA, (PMID:22047078).
encoded by transcript TGME49_286450; Signal peptide predicted by SignalP 2.0 HMM (probability 0.923) with cleavage site probability 0.441 at residue 26; Predicted trans-membrane domain (TMHMM2.0):6-26:70-93
elongation factor 1-alpha (EF-1-ALPHA), putative
tetratricopeptide repeat-containing protein
encoded by transcript TGME49_286260; Signal peptide predicted by SignalP 2.0 HMM (probability 0.518) with cleavage site probability 0.238 at residue 130
encoded by transcript TGME49_286250; Signal peptide predicted by SignalP 2.0 HMM (probability 0.994) with cleavage site probability 0.518 at residue 25
protein phosphatase 4, catalytic subunit
encoded by transcript TGME49_286200; Signal peptide predicted by SignalP 2.0 HMM (probability 0.672) with cleavage site probability 0.286 at residue 31
encoded by transcript TGME49_286190; Predicted trans-membrane domain (TMHMM2.0):1387-1410
encoded by transcript TGME49_286180; Predicted trans-membrane domain (TMHMM2.0):4-22:28-51
non-specific serine/threonine protein kinase
encoded by transcript TGME49_286110; Predicted trans-membrane domain (TMHMM2.0):19-42:54-77
translation initiation factor SUI1, putative
encoded by transcript TGME49_286060; Predicted trans-membrane domain (TMHMM2.0):256-279:285-308
encoded by transcript TGME49_286050; Signal peptide predicted by SignalP 2.0 HMM (probability 0.881) with cleavage site probability 0.848 at residue 38
encoded by transcript TGME49_286010; Predicted trans-membrane domain (TMHMM2.0):563-586
Filamin/ABP280 repeat-containing protein
encoded by transcript TGME49_285980; Product name based on PMID:12925131;18336823.
encoded by transcript TGME49_285940; Predicted trans-membrane domain (TMHMM2.0):555-578:598-621
encoded by transcript TGME49_285870; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.970) with cleavage site probability 0.470 at residue 36; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_285860; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.993) with cleavage site probability 0.343 at residue 35
peptidyl-prolyl cis-trans isomerase, FKBP-type domain-containing protein
encoded by transcript TGME49_285830; Predicted trans-membrane domain (TMHMM2.0):27-47:85-108
encoded by transcript TGME49_285790; Predicted trans-membrane domain (TMHMM2.0):70-93
U-snRNP-associated cyclophilin family protein
encoded by transcript TGME49_285750; Signal peptide predicted by SignalP 2.0 HMM (probability 0.887) with cleavage site probability 0.689 at residue 47; Predicted trans-membrane domain (TMHMM2.0):20-43
encoded by transcript TGME49_285740; Predicted trans-membrane domain (TMHMM2.0):121-144
encoded by transcript TGME49_285730; Signal peptide predicted by SignalP 2.0 HMM (probability 0.932) with cleavage site probability 0.887 at residue 84
ubiquitin fusion degradation protein UFD1AP
encoded by transcript TGME49_285700; Product name based on PMID:19808683.
encoded by transcript TGME49_285690; Signal peptide predicted by SignalP 2.0 HMM (probability 0.961) with cleavage site probability 0.226 at residue 23
dihydrolipoamide acyltransferase, putative
DEAD/DEAH box helicase domain-containing protein
encoded by transcript TGME49_285660; Predicted trans-membrane domain (TMHMM2.0):36-59
encoded by transcript TGME49_285530; Signal peptide predicted by SignalP 2.0 HMM (probability 0.995) with cleavage site probability 0.891 at residue 24
encoded by transcript TGME49_285500; Predicted trans-membrane domain (TMHMM2.0):555-578:582-605:970-993:999-1017
helix-hairpin-helix motif domain-containing protein
calmodulin-binding carboxy-terminal kinesin-like family protein, putative
encoded by transcript TGME49_285290; Signal peptide predicted by SignalP 2.0 HMM (probability 0.629) with cleavage site probability 0.373 at residue 35; Predicted trans-membrane domain (TMHMM2.0):19-42:45-68:80-103
encoded by transcript TGME49_285240; Signal peptide predicted by SignalP 2.0 HMM (probability 0.447) with cleavage site probability 0.420 at residue 20; Predicted trans-membrane domain (TMHMM2.0):199-222:236-259:271-289:292-315
encoded by transcript TGME49_285210; Predicted trans-membrane domain (TMHMM2.0):1177-1200
cleavage and polyadenylation specifity factor protein
zinc finger, C3HC4 type (RING finger) domain-containing protein
encoded by transcript TGME49_285180; Signal peptide predicted by SignalP 2.0 HMM (probability 0.502) with cleavage site probability 0.339 at residue 26; Predicted trans-membrane domain (TMHMM2.0):532-555
ribosomal RNA large subunit methyltransferase I, putative
cyclin-dependent kinase family 5 protein
encoded by transcript TGME49_285160; Predicted member of protein kinase family CMGC;CDKL, (PMID:22047078).
mitochondrial ribosomal protein s6-2, putative
encoded by transcript TGME49_284660; Signal peptide predicted by SignalP 2.0 HMM (probability 0.994) with cleavage site probability 0.447 at residue 29
encoded by transcript TGME49_284615; Signal peptide predicted by SignalP 2.0 HMM (probability 0.585) with cleavage site probability 0.378 at residue 34
encoded by transcript TGME49_284602; Predicted trans-membrane domain (TMHMM2.0):98-121:130-150:281-304:313-336
haloacid dehalogenase family hydrolase domain-containing protein
encoded by transcript TGME49_284598; Predicted trans-membrane domain (TMHMM2.0):299-319:364-387:407-430:444-467:479-502
encoded by transcript TGME49_284590; Gene product name based on ToxoDB Community Expert Annotation.
ribose-phosphate diphosphokinase subfamily protein
encoded by transcript TGME49_284580; Signal peptide predicted by SignalP 2.0 HMM (probability 0.579) with cleavage site probability 0.096 at residue 24
encoded by transcript TGME49_284530; Predicted trans-membrane domain (TMHMM2.0):395-418:464-487
encoded by transcript TGME49_284310; Signal peptide predicted by SignalP 2.0 HMM (probability 0.986) with cleavage site probability 0.256 at residue 24; Predicted trans-membrane domain (TMHMM2.0):20-43
encoded by transcript TGME49_284170; Predicted trans-membrane domain (TMHMM2.0):351-374:448-471:788-811
histone lysine methyltransferase, SET, putative
encoded by transcript TGME49_284160; Gene product name based on ToxoDB Community Expert Annotation.
5'-3' exonuclease, N-terminal resolvase family domain-containing protein
encoded by transcript TGME49_284010; Signal peptide predicted by SignalP 2.0 HMM (probability 0.787) with cleavage site probability 0.193 at residue 86
encoded by transcript TGME49_283890; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_283882; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.351 at residue 21
RNA recognition motif-containing protein
encoded by transcript TGME49_283855; Signal peptide predicted by SignalP 2.0 HMM (probability 0.572) with cleavage site probability 0.353 at residue 31
GATA zinc finger domain-containing protein
encoded by transcript TGME49_283830; Gene product name based on ToxoDB Community Expert Annotation. PMID: 21831041.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.989) with cleavage site probability 0.552 at residue 34
glycine cleavage T-protein (aminomethyl transferase) domain-containing protein
encoded by transcript TGME49_283800; Predicted trans-membrane domain (TMHMM2.0):110-133
encoded by transcript TGME49_283780; Product name based on PMID:17449654.; Predicted trans-membrane domain (TMHMM2.0):45-68
endomembrane protein 70 subfamily protein
phosphotyrosyl phosphate activator (ptpa) protein
longevity-assurance protein (LAG1) domain-containing protein
encoded by transcript TGME49_283710; Signal peptide predicted by SignalP 2.0 HMM (probability 0.500) with cleavage site probability 0.485 at residue 18; Predicted trans-membrane domain (TMHMM2.0):4-24:95-113:143-166:227-250:269-292
NLI interacting factor family phosphatase
encoded by transcript TGME49_283590; Signal peptide predicted by SignalP 2.0 HMM (probability 0.756) with cleavage site probability 0.232 at residue 132
encoded by transcript TGME49_283580; Predicted trans-membrane domain (TMHMM2.0):75-98
encoded by transcript TGME49_283570; Signal peptide predicted by SignalP 2.0 HMM (probability 0.817) with cleavage site probability 0.792 at residue 25
encoded by transcript TGME49_283540; Signal peptide predicted by SignalP 2.0 HMM (probability 0.907) with cleavage site probability 0.712 at residue 42
cell-cycle-associated protein kinase DYRK2, putative
encoded by transcript TGME49_283480; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase subfamily CMGC;DYRK;DYRK2, (PMID:22047078).
Kazal-type serine protease inhibitor domain-containing protein
encoded by transcript TGME49_283470; Signal peptide predicted by SignalP 2.0 HMM (probability 0.763) with cleavage site probability 0.615 at residue 24
encoded by transcript TGME49_283460; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.859) with cleavage site probability 0.553 at residue 23
encoded by transcript TGME49_283450; Signal peptide predicted by SignalP 2.0 HMM (probability 0.882) with cleavage site probability 0.446 at residue 22; Predicted trans-membrane domain (TMHMM2.0):94-114
encoded by transcript TGME49_307460; Predicted trans-membrane domain (TMHMM2.0):105-128
encoded by transcript TGME49_307480; Predicted trans-membrane domain (TMHMM2.0):61-84