Toxoplasma gondii ME49 chromosome IV, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma.
Submitted (18-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (25-APR-2013) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
ABPA02000001 and ABPA02000002 sequences updated by submitter
Submitted (31-JUL-2012) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM002038.\nThis work was supported by the National Institute of Allergy and\nInfectious Diseases (NIAID), Genome Sequencing Centers for\nInfectious Diseases (GSCID) program. This sequence record is\nco-owned by JCVI and EuPathDB. Additional Toxoplasma gondii\nresources are available at ToxoDB, http://toxodb.org/toxo/ and at\nJCVI, http://gsc.jcvi.org/projects/gsc/t_gondii/index.shtml.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1.92\nAssembly Name :: TGA4\nGenome Coverage :: 26.55x\nSequencing Technology :: 454 GS FLX Titanium; Sanger\n##Genome-Assembly-Data-END##
encoded by transcript TGME49_317830; Signal peptide predicted by SignalP 2.0 HMM (probability 0.842) with cleavage site probability 0.791 at residue 20
encoded by transcript TGME49_206910; Signal peptide predicted by SignalP 2.0 HMM (probability 0.885) with cleavage site probability 0.473 at residue 22
encoded by transcript TGME49_320770; Signal peptide predicted by SignalP 2.0 HMM (probability 0.982) with cleavage site probability 0.321 at residue 31
encoded by transcript TGME49_320740; Signal peptide predicted by SignalP 2.0 HMM (probability 0.991) with cleavage site probability 0.947 at residue 30; Predicted trans-membrane domain (TMHMM2.0):6-29
homoserine O-acetyltransferase, putative
encoded by transcript TGME49_320720; Predicted trans-membrane domain (TMHMM2.0):187-210
gamma-soluble NSF attachment protein, putative
encoded by transcript TGME49_320660; Signal peptide predicted by SignalP 2.0 HMM (probability 0.874) with cleavage site probability 0.251 at residue 37
peptidylprolyl isomerase domain-containing protein
phosphotransferase enzyme family protein
encoded by transcript TGME49_320630; Signal peptide predicted by SignalP 2.0 HMM (probability 0.833) with cleavage site probability 0.515 at residue 20
cold-shock DNA-binding domain-containing protein
encoded by transcript TGME49_320588; Signal peptide predicted by SignalP 2.0 HMM (probability 0.514) with cleavage site probability 0.241 at residue 50; Predicted trans-membrane domain (TMHMM2.0):20-43
encoded by transcript TGME49_320580; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.923 at residue 20
encoded by transcript TGME49_320540; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.987 at residue 19
encoded by transcript TGME49_320530; Signal peptide predicted by SignalP 2.0 HMM (probability 0.973) with cleavage site probability 0.674 at residue 18
N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D family protein
encoded by transcript TGME49_320490; Predicted trans-membrane domain (TMHMM2.0):147-170
encoded by transcript TGME49_320480; Product name based on PMID:20686666.
encoded by transcript TGME49_320470; Predicted trans-membrane domain (TMHMM2.0):45-65:94-117:123-146:165-188
ABC transporter transmembrane region domain-containing protein
ribosome biogenesis regulatory protein (rrs1) protein
encoded by transcript TGME49_320440; Predicted trans-membrane domain (TMHMM2.0):43-63
cell-cycle-control protein (translation regulation), putative
encoded by transcript TGME49_320300; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_320290; Signal peptide predicted by SignalP 2.0 HMM (probability 0.846) with cleavage site probability 0.376 at residue 42
encoded by transcript TGME49_320270; Signal peptide predicted by SignalP 2.0 HMM (probability 0.702) with cleavage site probability 0.184 at residue 63; Predicted trans-membrane domain (TMHMM2.0):6-29:43-66:72-95:151-174:439-462:542-565:680- 703
encoded by transcript TGME49_320260; Signal peptide predicted by SignalP 2.0 HMM (probability 0.988) with cleavage site probability 0.737 at residue 24; Predicted trans-membrane domain (TMHMM2.0):4-24:632-655:667-690:693-713:717-737:741-764
encoded by transcript TGME49_320250; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.992) with cleavage site probability 0.483 at residue 37; Predicted trans-membrane domain (TMHMM2.0):20-39
encoded by transcript TGME49_320240; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.692 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-39
encoded by transcript TGME49_320230; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.985) with cleavage site probability 0.853 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-40
ubiquinol cytochrome c oxidoreductase, putative
WD domain, G-beta repeat domain containing protein
encoded by transcript TGME49_320200; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.969) with cleavage site probability 0.489 at residue 37; Predicted trans-membrane domain (TMHMM2.0):20-39
encoded by transcript TGME49_320190; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.688) with cleavage site probability 0.503 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-39
encoded by transcript TGME49_320180; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.906) with cleavage site probability 0.515 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-39
encoded by transcript TGME49_320170; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.971) with cleavage site probability 0.918 at residue 39
elongation factor Tu GTP binding domain-containing protein
ubiquinol-cytochrome c reductase hinge protein, putative
encoded by transcript TGME49_320135; Signal peptide predicted by SignalP 2.0 HMM (probability 0.789) with cleavage site probability 0.178 at residue 24
diadenosine tetraphosphatase family protein
encoded by transcript TGME49_320120; Signal peptide predicted by SignalP 2.0 HMM (probability 0.725) with cleavage site probability 0.128 at residue 55
proliferating cell nuclear antigen PCNA2
encoded by transcript TGME49_320110; Gene product name based on ToxoDB Community Expert Annotation.
RNA recognition motif-containing protein
CDK-activating kinase assembly factor MAT1 protein
transporter, major facilitator family protein
encoded by transcript TGME49_320000; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase family Other;SCY1, (PMID:22047078).
encoded by transcript TGME49_319988; Predicted trans-membrane domain (TMHMM2.0):19-42
encoded by transcript TGME49_319970; Gene product name based on ToxoDB Community Expert Annotation.; Predicted trans-membrane domain (TMHMM2.0):39-62
encoded by transcript TGME49_319960; Predicted trans-membrane domain (TMHMM2.0):126-149
2-oxo acid dehydrogenases acyltransferase (catalytic domain) domain-containing protein
WD domain, G-beta repeat-containing protein
encoded by transcript TGME49_319890; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.964 at residue 22
ubiquitin-conjugating enzyme subfamily protein
splicing factor U2AF family SnRNP auxilary factor large subunit, RRM domain-containing protein
encoded by transcript TGME49_319740; Signal peptide predicted by SignalP 2.0 HMM (probability 0.971) with cleavage site probability 0.144 at residue 41; Predicted trans-membrane domain (TMHMM2.0):6-29:33-56:106-129:143-166:172-195:231-254:260- 283
encoded by transcript TGME49_319690; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.981 at residue 21
encoded by transcript TGME49_319680; Signal peptide predicted by SignalP 2.0 HMM (probability 0.990) with cleavage site probability 0.573 at residue 21
histone lysine methyltransferase, SET, putative
encoded by transcript TGME49_319662; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.988) with cleavage site probability 0.882 at residue 31; Predicted trans-membrane domain (TMHMM2.0):12-35
3' exoribonuclease family, domain 1 domain-containing protein
encoded by transcript TGME49_319650; Signal peptide predicted by SignalP 2.0 HMM (probability 0.586) with cleavage site probability 0.296 at residue 22
encoded by transcript TGME49_319640; Predicted trans-membrane domain (TMHMM2.0):743-766
encoded by transcript TGME49_319630; Signal peptide predicted by SignalP 2.0 HMM (probability 0.987) with cleavage site probability 0.730 at residue 27; Predicted trans-membrane domain (TMHMM2.0):12-35:225-248
encoded by transcript TGME49_319620; Predicted trans-membrane domain (TMHMM2.0):19-42:51-74:249-272
eIF2 kinase IF2K-D (incomplete catalytic triad)
encoded by transcript TGME49_319610; Gene product name based on ToxoDB Community Expert Annotation.
alpha-tubulin N-acetyltransferase, putative
encoded by transcript TGME49_319560; Product name based on PMID:1944419;11254953;18411248;19218426;12925131;11861763; 18390648;11207591;10852820.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.989) with cleavage site probability 0.958 at residue 26
encoded by transcript TGME49_319530; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_319360; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.782) with cleavage site probability 0.505 at residue 18
encoded by transcript TGME49_319350; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.418 at residue 32; Predicted trans-membrane domain (TMHMM2.0):6-29:355-378
encoded by transcript TGME49_319340; Signal peptide predicted by SignalP 2.0 HMM (probability 0.949) with cleavage site probability 0.331 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-43
aurora kinase(incomplete catalytic triad)
encoded by transcript TGME49_318730; Signal peptide predicted by SignalP 2.0 HMM (probability 0.905) with cleavage site probability 0.284 at residue 36; Predicted trans-membrane domain (TMHMM2.0):20-43
pyridoxal phosphate enzyme, YggS family protein
ATP-binding cassette sub-family F member 1
eukaryotic initiation factor-6, putative
encoded by transcript TGME49_318700; Signal peptide predicted by SignalP 2.0 HMM (probability 0.594) with cleavage site probability 0.403 at residue 20
3'5'-cyclic nucleotide phosphodiesterase domain-containing protein
encoded by transcript TGME49_318675; Predicted trans-membrane domain (TMHMM2.0):237-260:269-292:308-331:373-396:408-431
DNA /pantothenate metabolism flavoprotein
encoded by transcript TGME49_318580; Product name based on PMID:18336823.
encoded by transcript TGME49_318570; Predicted trans-membrane domain (TMHMM2.0):171-194:203-225:237-257:260-283
ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein
encoded by transcript TGME49_318550; Signal peptide predicted by SignalP 2.0 HMM (probability 0.871) with cleavage site probability 0.708 at residue 45; Predicted trans-membrane domain (TMHMM2.0):29-52
calcium binding egf domain-containing protein
N-ethylmaleimide-sensitive fusion protein, putative
encoded by transcript TGME49_318500; Signal peptide predicted by SignalP 2.0 HMM (probability 0.599) with cleavage site probability 0.560 at residue 20
encoded by transcript TGME49_318480; Gene product name based on ToxoDB Community Expert Annotation.
P-type ATPase of unknown pump specificity (type V) protein
zinc finger, C3HC4 type (RING finger) domain-containing protein
helicase associated domain (ha2) protein
encoded by transcript TGME49_318430; Product name based on PMID:18336823.
encoded by transcript TGME49_318370; Predicted trans-membrane domain (TMHMM2.0):470-493
encoded by transcript TGME49_318360; Predicted trans-membrane domain (TMHMM2.0):3-23
Pumilio-family RNA binding repeat-containing protein
encoded by transcript TGME49_318330; Gene product name based on ToxoDB Community Expert Annotation.
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP domain-containing protein
encoded by transcript TGME49_318320; Signal peptide predicted by SignalP 2.0 HMM (probability 0.489) with cleavage site probability 0.119 at residue 101
encoded by transcript TGME49_318300; Signal peptide predicted by SignalP 2.0 HMM (probability 0.748) with cleavage site probability 0.455 at residue 39
peptidyl-prolyl cis-trans isomerase, FKBP-type domain-containing protein
encoded by transcript TGME49_318275; Signal peptide predicted by SignalP 2.0 HMM (probability 0.933) with cleavage site probability 0.234 at residue 73
transcription initiation factor TFIID subunit TAF5
encoded by transcript TGME49_318260; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_318230; Product name based on PMID:17449654.
MSP (Major sperm protein) domain-containing protein
encoded by transcript TGME49_318160; Predicted trans-membrane domain (TMHMM2.0):213-232
encoded by transcript TGME49_211730; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_211710; Signal peptide predicted by SignalP 2.0 HMM (probability 0.875) with cleavage site probability 0.605 at residue 22; Predicted trans-membrane domain (TMHMM2.0):9-32:52-72:86-109
encoded by transcript TGME49_211680; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.463 at residue 22
S1 RNA binding domain-containing protein
encoded by transcript TGME49_211660; Signal peptide predicted by SignalP 2.0 HMM (probability 0.837) with cleavage site probability 0.320 at residue 39
encoded by transcript TGME49_211640; Predicted trans-membrane domain (TMHMM2.0):2015-2038:2087-2107:2126-2160:2172-2192
encoded by transcript TGME49_211480; Predicted trans-membrane domain (TMHMM2.0):37-60
encoded by transcript TGME49_211450; Predicted trans-membrane domain (TMHMM2.0):63-86:115-138
translation initiation factor sui1 protein
DEAD/DEAH box helicase domain-containing protein
tetratricopeptide repeat-containing protein
encoded by transcript TGME49_211350; Predicted trans-membrane domain (TMHMM2.0):14-37:73-96:100-123:127-150
encoded by transcript TGME49_211320; Signal peptide predicted by SignalP 2.0 HMM (probability 0.991) with cleavage site probability 0.904 at residue 18
encoded by transcript TGME49_211290; Signal peptide predicted by SignalP 2.0 HMM (probability 0.989) with cleavage site probability 0.976 at residue 21
sushi domain (scr repeat) domain-containing protein
encoded by transcript TGME49_211270; Predicted trans-membrane domain (TMHMM2.0):3266-3289
rhoptry kinase family protein ROP26 (incomplete catalytic triad)
encoded by transcript TGME49_211240; Signal peptide predicted by SignalP 2.0 HMM (probability 0.973) with cleavage site probability 0.535 at residue 36; Predicted trans-membrane domain (TMHMM2.0):14-37
eukaryotic initiation factor-2B, alpha subunit, putative
aminotransferase, class V superfamily protein
encoded by transcript TGME49_211040; Predicted trans-membrane domain (TMHMM2.0):65-88
encoded by transcript TGME49_211015; Predicted trans-membrane domain (TMHMM2.0):100-123
alternative splicing type 3 and, putative
replication factor C subunit 4, putative
dihydroorotate dehydrogenase reveal, putative
encoded by transcript TGME49_210790; Predicted trans-membrane domain (TMHMM2.0):157-176
hemimethylated DNA binding domain-containing protein
encoded by transcript TGME49_210770; Signal peptide predicted by SignalP 2.0 HMM (probability 0.811) with cleavage site probability 0.604 at residue 22
glutamine amidotransferase-related, putative
Ferredoxin-fold anticodon binding domain-containing protein
encoded by transcript TGME49_210740; Signal peptide predicted by SignalP 2.0 HMM (probability 0.951) with cleavage site probability 0.779 at residue 22
ATP-dependent hsl protease ATP-binding subunit hslU, putative
encoded by transcript TGME49_300990; Predicted trans-membrane domain (TMHMM2.0):55-75:180-203
serine/threonine protein phosphatase, putative
encoded by transcript TGME49_301130; Signal peptide predicted by SignalP 2.0 HMM (probability 0.652) with cleavage site probability 0.292 at residue 23; Predicted trans-membrane domain (TMHMM2.0):6-25:44-67
encoded by transcript TGME49_301140; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_301150; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.890) with cleavage site probability 0.652 at residue 39
encoded by transcript TGME49_301160; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.991) with cleavage site probability 0.763 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-39
encoded by transcript TGME49_301170; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.987) with cleavage site probability 0.933 at residue 37; Predicted trans-membrane domain (TMHMM2.0):365-388
encoded by transcript TGME49_301180; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.708) with cleavage site probability 0.628 at residue 39; Predicted trans-membrane domain (TMHMM2.0):19-39
NAD(P) transhydrogenase subunit beta, putative
endonuclease/exonuclease/phosphatase family protein
encoded by transcript TGME49_301218; Signal peptide predicted by SignalP 2.0 HMM (probability 0.737) with cleavage site probability 0.399 at residue 45
DNA repair protein Rad4 domain-containing protein
encoded by transcript TGME49_301270; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase group TKL, (PMID:22047078).
encoded by transcript TGME49_301330; Predicted trans-membrane domain (TMHMM2.0):91-114
encoded by transcript TGME49_301355; Predicted trans-membrane domain (TMHMM2.0):112-135
encoded by transcript TGME49_301360; Predicted trans-membrane domain (TMHMM2.0):1-24:43-66:72-95
DHHC zinc finger domain-containing protein
encoded by transcript TGME49_301370; Predicted trans-membrane domain (TMHMM2.0):11-34:56-76:157-180:194-217
ribosome biogenesis protein BOP1, putative
encoded by transcript TGME49_301440; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_301450; Predicted trans-membrane domain (TMHMM2.0):214-237:1633-1656
encoded by transcript TGME49_301470; Signal peptide predicted by SignalP 2.0 HMM (probability 0.769) with cleavage site probability 0.209 at residue 32; Predicted trans-membrane domain (TMHMM2.0):122-142:212-230:303-326
encoded by transcript TGME49_301480; Predicted trans-membrane domain (TMHMM2.0):141-164
encoded by transcript TGME49_301690; Signal peptide predicted by SignalP 2.0 HMM (probability 0.957) with cleavage site probability 0.387 at residue 35; Predicted trans-membrane domain (TMHMM2.0):11-34:110-133:182-202:282-302
encoded by transcript TGME49_212410; Signal peptide predicted by SignalP 2.0 HMM (probability 0.992) with cleavage site probability 0.442 at residue 24; Predicted trans-membrane domain (TMHMM2.0):195-213
encoded by transcript TGME49_237800; Signal peptide predicted by SignalP 2.0 HMM (probability 0.989) with cleavage site probability 0.440 at residue 24; Predicted trans-membrane domain (TMHMM2.0):188-211:281-299
encoded by transcript TGME49_237820; Product name based on PMID:20844581.
DNA polymerase I domain-containing protein
protein kinase domain-containing protein
FYVE zinc finger domain-containing protein
encoded by transcript TGME49_237880; Signal peptide predicted by SignalP 2.0 HMM (probability 0.675) with cleavage site probability 0.316 at residue 45; Predicted trans-membrane domain (TMHMM2.0):14-37
encoded by transcript TGME49_237890; Gene product name based on ToxoDB Community Expert Annotation.
enoyl-CoA hydratase/isomerase family protein
eukaryotic translation initiation factor 3 subunit 7, putative