Toxoplasma gondii ME49 chromosome III, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma.
Submitted (18-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (25-APR-2013) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
ABPA02000001 and ABPA02000002 sequences updated by submitter
Submitted (31-JUL-2012) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM002037.\nThis work was supported by the National Institute of Allergy and\nInfectious Diseases (NIAID), Genome Sequencing Centers for\nInfectious Diseases (GSCID) program. This sequence record is\nco-owned by JCVI and EuPathDB. Additional Toxoplasma gondii\nresources are available at ToxoDB, http://toxodb.org/toxo/ and at\nJCVI, http://gsc.jcvi.org/projects/gsc/t_gondii/index.shtml.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1.92\nAssembly Name :: TGA4\nGenome Coverage :: 26.55x\nSequencing Technology :: 454 GS FLX Titanium; Sanger\n##Genome-Assembly-Data-END##
encoded by transcript TGME49_276230; Signal peptide predicted by SignalP 2.0 HMM (probability 0.991) with cleavage site probability 0.700 at residue 22; Predicted trans-membrane domain (TMHMM2.0):1-24:92-115
encoded by transcript TGME49_276180; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_276140; Product name based on PMID:11278405.
encoded by transcript TGME49_276130; Product name based on PMID:17164247.
histone lysine methyltransferase, SET, putative
encoded by transcript TGME49_276120; Gene product name based on ToxoDB Community Expert Annotation.
cytochrome b5 family heme/steroid binding domain-containing protein
encoded by transcript TGME49_276110; Predicted trans-membrane domain (TMHMM2.0):209-232
coenzyme q (ubiquinone) biosynthesis protein coq4 protein
encoded by transcript TGME49_275970; Signal peptide predicted by SignalP 2.0 HMM (probability 0.978) with cleavage site probability 0.441 at residue 21
tubulin/FtsZ family, GTPase domain-containing protein
encoded by transcript TGME49_275860; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_275850; Signal peptide predicted by SignalP 2.0 HMM (probability 0.980) with cleavage site probability 0.905 at residue 47
protein phosphatase 2C domain-containing protein
SRP72 RNA-binding domain-containing protein
encoded by transcript TGME49_275798; Predicted trans-membrane domain (TMHMM2.0):441-464
encoded by transcript TGME49_275790; Predicted trans-membrane domain (TMHMM2.0):476-499
encoded by transcript TGME49_275770; Predicted trans-membrane domain (TMHMM2.0):29-52:131-151
encoded by transcript TGME49_275760; Signal peptide predicted by SignalP 2.0 HMM (probability 0.804) with cleavage site probability 0.595 at residue 47; Predicted trans-membrane domain (TMHMM2.0):24-47
small nuclear ribonucleoprotein E, putative
encoded by transcript TGME49_275700; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.956 at residue 23
alveolin domain containing intermediate filament IMC15
encoded by transcript TGME49_275670; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_275660; Signal peptide predicted by SignalP 2.0 HMM (probability 0.494) with cleavage site probability 0.484 at residue 30; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_275640; Signal peptide predicted by SignalP 2.0 HMM (probability 0.538) with cleavage site probability 0.359 at residue 38; Predicted trans-membrane domain (TMHMM2.0):357-380
HECT-domain (ubiquitin-transferase) domain-containing protein
encoded by transcript TGME49_275610; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_252070; This gene belongs to the Lysine-Arginine rich Unidentified Function (KRUF) family of Toxoplasma-expanded genes.; Predicted trans-membrane domain (TMHMM2.0):4-24:36-59
encoded by transcript TGME49_252065; This gene belongs to the Lysine-Arginine rich Unidentified Function (KRUF) family of Toxoplasma-expanded genes.
encoded by transcript TGME49_252190; This gene belongs to the Lysine-Arginine rich Unidentified Function (KRUF) family of Toxoplasma-expanded genes.
cell cycle regulator with zn-finger domain-containing protein
encoded by transcript TGME49_252200; Predicted trans-membrane domain (TMHMM2.0):237-260:279-302:385-408:422-445
pentatricopeptide repeat domain-containing protein
tetratricopeptide repeat domain containing protein
encoded by transcript TGME49_252330; Predicted trans-membrane domain (TMHMM2.0):88-111:120-143:187-210:224-247
rhoptry kinase family protein ROP24 (incomplete catalytic triad)
encoded by transcript TGME49_252360; Signal peptide predicted by SignalP 2.0 HMM (probability 0.991) with cleavage site probability 0.538 at residue 21
AP2 domain transcription factor AP2III-1
encoded by transcript TGME49_252380; Predicted trans-membrane domain (TMHMM2.0):1143-1166
encoded by transcript TGME49_252390; Signal peptide predicted by SignalP 2.0 HMM (probability 0.656) with cleavage site probability 0.371 at residue 49; Predicted trans-membrane domain (TMHMM2.0):27-50
histone arginine methyltransferase PRMT3
encoded by transcript TGME49_252420; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_252440; Signal peptide predicted by SignalP 2.0 HMM (probability 0.906) with cleavage site probability 0.286 at residue 73
encoded by transcript TGME49_252450; Signal peptide predicted by SignalP 2.0 HMM (probability 0.853) with cleavage site probability 0.312 at residue 185; Predicted trans-membrane domain (TMHMM2.0):59-82
encoded by transcript TGME49_252480; Signal peptide predicted by SignalP 2.0 HMM (probability 0.683) with cleavage site probability 0.582 at residue 22
encoded by transcript TGME49_252500; Predicted protein kinase, (PMID:22047078).
initiation factor, subunit 2 family protein
encoded by transcript TGME49_252640; Gene product name based on ToxoDB Community Expert Annotation. PMID: 11223136.; Predicted trans-membrane domain (TMHMM2.0):176-196:349-372:395-418:759-782:785-803:823- 846:874-894:914-937:951-971
encoded by transcript TGME49_252860; Predicted trans-membrane domain (TMHMM2.0):155-175:179-202
encoded by transcript TGME49_253030; Predicted trans-membrane domain (TMHMM2.0):81-101
encoded by transcript TGME49_253040; Gene product name based on ToxoDB Community Expert Annotation.
WD domain, G-beta repeat-containing protein
DEAD/DEAH box helicase domain-containing protein
encoded by transcript TGME49_253100; Predicted trans-membrane domain (TMHMM2.0):66-89:331-354:373-396:410-433
transporter, major facilitator family protein
encoded by transcript TGME49_253150; Signal peptide predicted by SignalP 2.0 HMM (probability 0.611) with cleavage site probability 0.562 at residue 28
encoded by transcript TGME49_253170; Predicted trans-membrane domain (TMHMM2.0):2033-2056
encoded by transcript TGME49_253300; Predicted trans-membrane domain (TMHMM2.0):343-366:377-400:453-476:488-511
Rhoptry kinase family protein, truncated (incomplete catalytic triad)
encoded by transcript TGME49_253330; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.996) with cleavage site probability 0.868 at residue 26
encoded by transcript TGME49_253360; Predicted trans-membrane domain (TMHMM2.0):361-384
AP2 domain transcription factor AP2III-2
encoded by transcript TGME49_253410; Predicted trans-membrane domain (TMHMM2.0):397-420
cell-cycle-associated protein kinase SRPK, putative
encoded by transcript TGME49_253440; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase family CMGC;SRPK, (PMID:22047078).
encoded by transcript TGME49_253460; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.780 at residue 20
alveolin domain containing intermediate filament IMC13
encoded by transcript TGME49_253470; Gene product name based on ToxoDB Community Expert Annotation.
U3 small nucleolar RNA-associated protein 6 protein
WD repeat-containing protein 92, putative
encoded by transcript TGME49_253570; Signal peptide predicted by SignalP 2.0 HMM (probability 0.714) with cleavage site probability 0.612 at residue 21
encoded by transcript TGME49_253640; Predicted trans-membrane domain (TMHMM2.0):63-86:92-115:129-152
DnaJ C terminal region domain-containing protein
encoded by transcript TGME49_253650; Predicted trans-membrane domain (TMHMM2.0):105-128
encoded by transcript TGME49_253690; Predicted trans-membrane domain (TMHMM2.0):19-42:51-74
encoded by transcript TGME49_253710; Predicted trans-membrane domain (TMHMM2.0):142-165:235-258
importin-beta N-terminal domain-containing protein
encoded by transcript TGME49_253755; Signal peptide predicted by SignalP 2.0 HMM (probability 0.973) with cleavage site probability 0.615 at residue 38; Predicted trans-membrane domain (TMHMM2.0):12-35:122-145
zinc finger (CCCH type) motif-containing protein
peptidase M16 inactive domain-containing protein
encoded by transcript TGME49_253900; Gene product name based on ToxoDB Community Expert Annotation. PMID 20442414.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.990) with cleavage site probability 0.789 at residue 26
encoded by transcript TGME49_253930; Predicted trans-membrane domain (TMHMM2.0):2288-2308:2359-2382
CAM Kinase family, incomplete catalytic triad
encoded by transcript TGME49_253940; Gene product name based on ToxoDB Community Expert Annotation.
oxidoreductase, short chain dehydrogenase/reductase family protein
encoded by transcript TGME49_253960; Signal peptide predicted by SignalP 2.0 HMM (probability 0.626) with cleavage site probability 0.498 at residue 22
encoded by transcript TGME49_254000; Signal peptide predicted by SignalP 2.0 HMM (probability 0.985) with cleavage site probability 0.372 at residue 66
encoded by transcript TGME49_254010; Signal peptide predicted by SignalP 2.0 HMM (probability 0.912) with cleavage site probability 0.846 at residue 48; Predicted trans-membrane domain (TMHMM2.0):23-46
zinc finger CDGSH-type domain-containing protein
encoded by transcript TGME49_254030; Predicted trans-membrane domain (TMHMM2.0):93-116
encoded by transcript TGME49_254050; Predicted trans-membrane domain (TMHMM2.0):76-99
encoded by transcript TGME49_254060; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.465) with cleavage site probability 0.260 at residue 58; Predicted trans-membrane domain (TMHMM2.0):33-51
encoded by transcript TGME49_254070; Predicted trans-membrane domain (TMHMM2.0):6-26:35-58:70-93:117-140
metal cation transporter, ZIP family protein
encoded by transcript TGME49_254110; Product name based on PMID:20374492.; Predicted trans-membrane domain (TMHMM2.0):11-34
autophagy-related protein 8 atg8, putative
encoded by transcript TGME49_254120; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_254140; Gene product name based on ToxoDB Community Expert Annotation.
calcium signaling protein kinase MARK, putative
encoded by transcript TGME49_254190; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase subfamily CAMK;CAMKL;MARK, (PMID:22047078).
anticodon binding domain-containing protein
encoded by transcript TGME49_254200; Predicted trans-membrane domain (TMHMM2.0):6-29
RNA recognition motif-containing protein
encoded by transcript TGME49_254255; Signal peptide predicted by SignalP 2.0 HMM (probability 0.604) with cleavage site probability 0.231 at residue 19
COX19 cytochrome c oxidase assembly family protein
encoded by transcript TGME49_254270; Signal peptide predicted by SignalP 2.0 HMM (probability 0.944) with cleavage site probability 0.295 at residue 51; Predicted trans-membrane domain (TMHMM2.0):22-45:78-101:148-168:182-205:211-229:238- 261:286-309:339-362
encoded by transcript TGME49_254280; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_254340; Predicted trans-membrane domain (TMHMM2.0):42-65
encoded by transcript TGME49_254365; Predicted trans-membrane domain (TMHMM2.0):41-61:89-112:124-147:172-190
encoded by transcript TGME49_254410; Signal peptide predicted by SignalP 2.0 HMM (probability 0.914) with cleavage site probability 0.344 at residue 67
encoded by transcript TGME49_254430; Signal peptide predicted by SignalP 2.0 HMM (probability 0.715) with cleavage site probability 0.369 at residue 22
encoded by transcript TGME49_254470; Predicted trans-membrane domain (TMHMM2.0):658-681
encoded by transcript TGME49_254490; Predicted trans-membrane domain (TMHMM2.0):1218-1236:1256-1276
encoded by transcript TGME49_254520; Gene product name based on ToxoDB Community Expert Annotation.
CDP-alcohol phosphatidyltransferase superfamily protein
encoded by transcript TGME49_254555; Gene product name based on ToxoDB Community Expert Annotation.
UDP-galactose transporter family protein
encoded by transcript TGME49_254603; Signal peptide predicted by SignalP 2.0 HMM (probability 0.963) with cleavage site probability 0.431 at residue 18
Tim10/DDP family zinc finger superfamily protein
encoded by transcript TGME49_254630; Predicted member of protein kinase family CMGC;CDK, (PMID:22047078).
encoded by transcript TGME49_254670; Signal peptide predicted by SignalP 2.0 HMM (probability 0.993) with cleavage site probability 0.985 at residue 28
encoded by transcript TGME49_254680; Signal peptide predicted by SignalP 2.0 HMM (probability 0.904) with cleavage site probability 0.498 at residue 31; Predicted trans-membrane domain (TMHMM2.0):14-32
encoded by transcript TGME49_254690; Predicted trans-membrane domain (TMHMM2.0):24-47
encoded by transcript TGME49_254720; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.988 at residue 23
POPLD (NUC188) domain-containing protein
encoded by transcript TGME49_254780; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.876 at residue 22
encoded by transcript TGME49_254800; Signal peptide predicted by SignalP 2.0 HMM (probability 0.819) with cleavage site probability 0.334 at residue 23
tetratricopeptide repeat-containing protein
encoded by transcript TGME49_254880; Predicted trans-membrane domain (TMHMM2.0):25-48:699-722
encoded by transcript TGME49_254890; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.336 at residue 26
proteasome subunit beta type 2, putative
encoded by transcript TGME49_254920; Signal peptide predicted by SignalP 2.0 HMM (probability 0.553) with cleavage site probability 0.469 at residue 18; Predicted trans-membrane domain (TMHMM2.0):70-93:302-325
encoded by transcript TGME49_254930; Predicted trans-membrane domain (TMHMM2.0):99-122:768-788:799-822:836-859:898-918
encoded by transcript TGME49_299220; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.931 at residue 19
B-box zinc finger domain-containing protein
encoded by transcript TGME49_299180; Signal peptide predicted by SignalP 2.0 HMM (probability 0.799) with cleavage site probability 0.600 at residue 15
AP2 domain transcription factor AP2III-3
encoded by transcript TGME49_299120; Predicted trans-membrane domain (TMHMM2.0):101-124
cleft lip and palate transmembrane protein 1 (clptm1) protein
encoded by transcript TGME49_299110; Predicted trans-membrane domain (TMHMM2.0):3-23:299-322:336-359:482-505:509-532
encoded by transcript TGME49_299080; Predicted trans-membrane domain (TMHMM2.0):1148-1171:1198-1221
encoded by transcript TGME49_299070; Predicted trans-membrane domain (TMHMM2.0):75-95
phosphatidylinositol n-acetylglucosaminyltransferase
AP2 domain transcription factor AP2III-4
encoded by transcript TGME49_299015; Predicted trans-membrane domain (TMHMM2.0):21-44
encoded by transcript TGME49_299000; Predicted trans-membrane domain (TMHMM2.0):53-76:350-368
encoded by transcript TGME49_298990; Signal peptide predicted by SignalP 2.0 HMM (probability 0.701) with cleavage site probability 0.178 at residue 29; Predicted trans-membrane domain (TMHMM2.0):8-28
RNA pseudouridine synthase superfamily protein
LSM3, U6 small nuclear RNA associated isoform 2 family protein
encoded by transcript TGME49_298960; Predicted trans-membrane domain (TMHMM2.0):38-61
encoded by transcript TGME49_298820; Predicted trans-membrane domain (TMHMM2.0):42-65
encoded by transcript TGME49_321170; Signal peptide predicted by SignalP 2.0 HMM (probability 0.521) with cleavage site probability 0.190 at residue 53; Predicted trans-membrane domain (TMHMM2.0):194-217