Toxoplasma gondii ME49 chromosome II, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma.
Submitted (18-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (25-APR-2013) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
ABPA02000001 and ABPA02000002 sequences updated by submitter
Submitted (31-JUL-2012) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM002036.\nThis work was supported by the National Institute of Allergy and\nInfectious Diseases (NIAID), Genome Sequencing Centers for\nInfectious Diseases (GSCID) program. This sequence record is\nco-owned by JCVI and EuPathDB. Additional Toxoplasma gondii\nresources are available at ToxoDB, http://toxodb.org/toxo/ and at\nJCVI, http://gsc.jcvi.org/projects/gsc/t_gondii/index.shtml.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1.92\nAssembly Name :: TGA4\nGenome Coverage :: 26.55x\nSequencing Technology :: 454 GS FLX Titanium; Sanger\n##Genome-Assembly-Data-END##
encoded by transcript TGME49_220860; Signal peptide predicted by SignalP 2.0 HMM (probability 0.729) with cleavage site probability 0.440 at residue 21
encoded by transcript TGME49_220870; Signal peptide predicted by SignalP 2.0 HMM (probability 0.792) with cleavage site probability 0.360 at residue 49; Predicted trans-membrane domain (TMHMM2.0):20-43:79-102:122-154
encoded by transcript TGME49_220890; Predicted trans-membrane domain (TMHMM2.0):63-86
ribosomal RNA methyltransferase (FtsJ) family protein
encoded by transcript TGME49_279100; Signal peptide predicted by SignalP 2.0 HMM (probability 0.996) with cleavage site probability 0.468 at residue 27; Predicted trans-membrane domain (TMHMM2.0):96-116
encoded by transcript TGME49_221170; Predicted trans-membrane domain (TMHMM2.0):78-101:157-180:189-212:303-326:335-358
encoded by transcript TGME49_221180; Predicted trans-membrane domain (TMHMM2.0):546-569:581-604:613-633:637-655:659-682
mrna cleavage factor family protein, putative
encoded by transcript TGME49_221210; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.955 at residue 17
encoded by transcript TGME49_221230; Predicted trans-membrane domain (TMHMM2.0):96-115
encoded by transcript TGME49_221240; Predicted trans-membrane domain (TMHMM2.0):32-55:59-79
oxidoreductase, 2OG-Fe(II) oxygenase family protein
encoded by transcript TGME49_221320; Predicted trans-membrane domain (TMHMM2.0):84-107
DNA gyrase/topoisomerase IV, A subunit domain-containing protein
encoded by transcript TGME49_221330; Signal peptide predicted by SignalP 2.0 HMM (probability 0.585) with cleavage site probability 0.473 at residue 30
encoded by transcript TGME49_221350; Signal peptide predicted by SignalP 2.0 HMM (probability 0.606) with cleavage site probability 0.250 at residue 49; Predicted trans-membrane domain (TMHMM2.0):24-47:235-253:256-279
encoded by transcript TGME49_221380; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_221410; Gene product name based on ToxoDB Community Expert Annotation.
Chromosome-associated kinesin KLP1, putative
encoded by transcript TGME49_221480; Predicted trans-membrane domain (TMHMM2.0):75-93:151-174
dual specificity phosphatase, catalytic domain-containing protein
adaptor complexes medium subunit family protein
CMGC kinase, MAPK family, MEK kinase-related (incomplete catalytic triad)
ribosomal RNA large subunit methyltransferase J protein
DEAD/DEAH box helicase domain-containing protein
transcriptional elongation factor FACT140
encoded by transcript TGME49_221670; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_221675; Predicted trans-membrane domain (TMHMM2.0):18-41
encoded by transcript TGME49_221700; Predicted trans-membrane domain (TMHMM2.0):74-97:102-125:158-181:185-208
encoded by transcript TGME49_221830; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_221850; Signal peptide predicted by SignalP 2.0 HMM (probability 0.985) with cleavage site probability 0.591 at residue 49
encoded by transcript TGME49_221855; Predicted trans-membrane domain (TMHMM2.0):36-59
WD domain, G-beta repeat-containing protein
encoded by transcript TGME49_221905; Predicted trans-membrane domain (TMHMM2.0):113-136
AN1 family Zinc finger domain-containing protein
encoded by transcript TGME49_221818; Predicted trans-membrane domain (TMHMM2.0):206-229:304-327
encoded by transcript TGME49_221922; Signal peptide predicted by SignalP 2.0 HMM (probability 0.587) with cleavage site probability 0.187 at residue 86
adaptin n terminal region domain-containing protein
encoded by transcript TGME49_222020; Product name based on PMID:17449654.
encoded by transcript TGME49_222060; Predicted trans-membrane domain (TMHMM2.0):431-454:546-569
elongation factor Tu GTP binding domain-containing protein
encoded by transcript TGME49_222075; Predicted trans-membrane domain (TMHMM2.0):86-109
encoded by transcript TGME49_222080; Signal peptide predicted by SignalP 2.0 HMM (probability 0.992) with cleavage site probability 0.392 at residue 45; Predicted trans-membrane domain (TMHMM2.0):19-42:134-157
encoded by transcript TGME49_222090; Predicted trans-membrane domain (TMHMM2.0):56-79:109-132
encoded by transcript TGME49_222200; Signal peptide predicted by SignalP 2.0 HMM (probability 0.724) with cleavage site probability 0.252 at residue 19; Predicted trans-membrane domain (TMHMM2.0):4-27:39-62:90-113:132-155:214-237:331-354:387- 410:435-458:467-488:492-515
alveolin domain containing intermediate filament IMC7
encoded by transcript TGME49_222220; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_222260; Predicted trans-membrane domain (TMHMM2.0):24-47:58-81
encoded by transcript TGME49_222270; Signal peptide predicted by SignalP 2.0 HMM (probability 0.995) with cleavage site probability 0.527 at residue 49
encoded by transcript TGME49_222300; Predicted trans-membrane domain (TMHMM2.0):16-36
encoded by transcript TGME49_222305; Predicted trans-membrane domain (TMHMM2.0):76-94
encoded by transcript TGME49_222310; Signal peptide predicted by SignalP 2.0 HMM (probability 0.978) with cleavage site probability 0.580 at residue 25; Predicted trans-membrane domain (TMHMM2.0):14-37:150-173:234-257:263-286:295-315:334- 357:381-404
encoded by transcript TGME49_222370; Gene product name based on ToxoDB Community Expert Annotation.; Predicted trans-membrane domain (TMHMM2.0):38-58
importin-beta N-terminal domain-containing protein
encoded by transcript TGME49_222400; Predicted trans-membrane domain (TMHMM2.0):147-170:179-202:234-257:261-284:403-426
encoded by transcript TGME49_222420; Predicted trans-membrane domain (TMHMM2.0):66-85:94-117:352-375:448-471:496-519
HECT-domain (ubiquitin-transferase) domain-containing protein
encoded by transcript TGME49_222440; Predicted trans-membrane domain (TMHMM2.0):137-157
IMP-specific 5'-nucleotidase 1, putative
stress responsive a/b barrel domain-containing protein
eukaryotic translation initiation factor, putative
mbp-1 interacting protein-2a family protein
encoded by transcript TGME49_222930; Predicted trans-membrane domain (TMHMM2.0):6-29
encoded by transcript TGME49_222935; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.966 at residue 21
SCY kinase-related protein (incomplete catalytic triad)
encoded by transcript TGME49_222960; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase family Other;SCY1, (PMID:22047078).
inositol(myo)-1(or 4)-monophosphatase 2, putative
encoded by transcript TGME49_223000; Product name based on PMID:16518471.; Predicted trans-membrane domain (TMHMM2.0):4-24
encoded by transcript TGME49_223010; Signal peptide predicted by SignalP 2.0 HMM (probability 0.548) with cleavage site probability 0.499 at residue 19
tetratricopeptide repeat-containing protein
cyclin-dependent kinase regulatory subunit protein
encoded by transcript TGME49_223125; Predicted trans-membrane domain (TMHMM2.0):51-74
encoded by transcript TGME49_297060; Product name based on PMID:17449654.
encoded by transcript TGME49_297070; Signal peptide predicted by SignalP 2.0 HMM (probability 0.558) with cleavage site probability 0.431 at residue 38
encoded by transcript TGME49_297090; Signal peptide predicted by SignalP 2.0 HMM (probability 0.994) with cleavage site probability 0.817 at residue 32; Predicted trans-membrane domain (TMHMM2.0):244-267
encoded by transcript TGME49_297100; Signal peptide predicted by SignalP 2.0 HMM (probability 0.727) with cleavage site probability 0.666 at residue 28
U6 snRNA-associated sm family protein Lsm2, putative
encoded by transcript TGME49_297160; Signal peptide predicted by SignalP 2.0 HMM (probability 0.677) with cleavage site probability 0.166 at residue 22
AMP-binding enzyme domain-containing protein
transporter, major facilitator family protein
encoded by transcript TGME49_297280; Signal peptide predicted by SignalP 2.0 HMM (probability 0.992) with cleavage site probability 0.468 at residue 21
encoded by transcript TGME49_297290; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.818 at residue 19
encoded by transcript TGME49_297320; Predicted trans-membrane domain (TMHMM2.0):19-42
encoded by transcript TGME49_297330; Predicted trans-membrane domain (TMHMM2.0):1629-1652:1658-1676:2847-2870
encoded by transcript TGME49_297350; Signal peptide predicted by SignalP 2.0 HMM (probability 0.867) with cleavage site probability 0.443 at residue 19
encoded by transcript TGME49_297400; Predicted trans-membrane domain (TMHMM2.0):250-273
encoded by transcript TGME49_297410; Signal peptide predicted by SignalP 2.0 HMM (probability 0.982) with cleavage site probability 0.950 at residue 27
encoded by transcript TGME49_297450; Predicted trans-membrane domain (TMHMM2.0):72-95
encoded by transcript TGME49_297460; Signal peptide predicted by SignalP 2.0 HMM (probability 0.994) with cleavage site probability 0.408 at residue 25
encoded by transcript TGME49_297510; Signal peptide predicted by SignalP 2.0 HMM (probability 0.876) with cleavage site probability 0.279 at residue 112; Predicted trans-membrane domain (TMHMM2.0):4-27:41-62:68-91
encoded by transcript TGME49_297520; Product name based on PMID:19879901.
encoded by transcript TGME49_297530; Gene product name based on ToxoDB Community Expert Annotation.
acyltransferase domain-containing protein
encoded by transcript TGME49_297650; Signal peptide predicted by SignalP 2.0 HMM (probability 0.993) with cleavage site probability 0.960 at residue 36; Predicted trans-membrane domain (TMHMM2.0):11-34
encoded by transcript TGME49_297710; Predicted trans-membrane domain (TMHMM2.0):20-43
transcription elongation factor 1, putative
encoded by transcript TGME49_297745; Predicted trans-membrane domain (TMHMM2.0):82-102
ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein
RecF/RecN/SMC N terminal domain-containing protein
Branched-chain-amino-acid aminotransferase
encoded by transcript TGME49_297880; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.976 at residue 30; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_297910; Signal peptide predicted by SignalP 2.0 HMM (probability 0.996) with cleavage site probability 0.484 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-43
encoded by transcript TGME49_297920; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.685 at residue 36; Predicted trans-membrane domain (TMHMM2.0):11-31
encoded by transcript TGME49_297960; Signal peptide predicted by SignalP 2.0 HMM (probability 0.655) with cleavage site probability 0.369 at residue 40; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_297980; Predicted trans-membrane domain (TMHMM2.0):26-49
Ubiquinol-cytochrome c chaperone, putative
encoded by transcript TGME49_298040; Predicted trans-membrane domain (TMHMM2.0):36-59
encoded by transcript TGME49_298060; Predicted trans-membrane domain (TMHMM2.0):19-39:53-73:168-191
encoded by transcript TGME49_298090; Signal peptide predicted by SignalP 2.0 HMM (probability 0.975) with cleavage site probability 0.529 at residue 20; Predicted trans-membrane domain (TMHMM2.0):71-94