Toxoplasma gondii ME49 chromosome Ib, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma.
Submitted (18-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (25-APR-2013) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
ABPA02000001 and ABPA02000002 sequences updated by submitter
Submitted (31-JUL-2012) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM002035.\nThis work was supported by the National Institute of Allergy and\nInfectious Diseases (NIAID), Genome Sequencing Centers for\nInfectious Diseases (GSCID) program. This sequence record is\nco-owned by JCVI and EuPathDB. Additional Toxoplasma gondii\nresources are available at ToxoDB, http://toxodb.org/toxo/ and at\nJCVI, http://gsc.jcvi.org/projects/gsc/t_gondii/index.shtml.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1.92\nAssembly Name :: TGA4\nGenome Coverage :: 26.55x\nSequencing Technology :: 454 GS FLX Titanium; Sanger\n##Genome-Assembly-Data-END##
coatomer protein complex, gamma sub-unit, putative
tetratricopeptide repeat-containing protein
ATP-dependent RNA helicase DDX1, putative
encoded by transcript TGME49_207440; Predicted trans-membrane domain (TMHMM2.0):26-49
DNA segment, Chr 10, Wayne State University 52, expressed family protein
encoded by transcript TGME49_207470; Signal peptide predicted by SignalP 2.0 HMM (probability 0.858) with cleavage site probability 0.576 at residue 51; Predicted trans-membrane domain (TMHMM2.0):30-53
protein phosphatase 2C domain-containing protein
tubulin/FtsZ family, GTPase domain-containing protein
rhoptry kinase family protein ROP36 (incomplete catalytic triad)
encoded by transcript TGME49_207610; Signal peptide predicted by SignalP 2.0 HMM (probability 0.905) with cleavage site probability 0.462 at residue 26
pyridine nucleotide-disulfide oxidoreductase domain-containing protein
peptidyl-tRNA hydrolase domain-containing protein
encoded by transcript TGME49_207630; Signal peptide predicted by SignalP 2.0 HMM (probability 0.798) with cleavage site probability 0.151 at residue 35
isoleucyl-tRNA synthetase family protein
suppressor of kinetochore protein 1, putative
encoded by transcript TGME49_207690; Product name based on PMID:18406478;19801898.; Predicted trans-membrane domain (TMHMM2.0):67-90
rhoptry kinase family protein ROP22 (incomplete catalytic triad)
encoded by transcript TGME49_207710; Predicted trans-membrane domain (TMHMM2.0):48-71:133-156:183-206:215-238
DnaJ C terminal region domain-containing protein
encoded by transcript TGME49_207780; Signal peptide predicted by SignalP 2.0 HMM (probability 0.850) with cleavage site probability 0.711 at residue 24; Predicted trans-membrane domain (TMHMM2.0):6-29
cell-cycle-associated protein kinase MAPK, putative
encoded by transcript TGME49_207820; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase family CMGC;MAPK, (PMID:22047078).
encoded by transcript TGME49_207900; Gene product name based on ToxoDB Community Expert Annotation.
manganese resistance 1 protein, putative
encoded by transcript TGME49_207920; Predicted trans-membrane domain (TMHMM2.0):558-593:625-648:657-689
phosphatidylethanolamine-binding protein
encoded by transcript TGME49_207930; Signal peptide predicted by SignalP 2.0 HMM (probability 0.975) with cleavage site probability 0.635 at residue 33
encoded by transcript TGME49_207950; Signal peptide predicted by SignalP 2.0 HMM (probability 0.553) with cleavage site probability 0.251 at residue 36; Predicted trans-membrane domain (TMHMM2.0):8-31:144-167
encoded by transcript TGME49_207955; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.516 at residue 20
encoded by transcript TGME49_207980; Signal peptide predicted by SignalP 2.0 HMM (probability 0.626) with cleavage site probability 0.193 at residue 129; Predicted trans-membrane domain (TMHMM2.0):253-276:292-315
ribosomal RNA large subunit methyltransferase J protein
encoded by transcript TGME49_208010; Predicted trans-membrane domain (TMHMM2.0):446-469
encoded by transcript TGME49_208030; Product name based on PMID:20545864;15913633;18346213;11281704;11157983;11027789 ;11053441.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.768) with cleavage site probability 0.492 at residue 25
encoded by transcript TGME49_208040; Predicted trans-membrane domain (TMHMM2.0):80-103
encoded by transcript TGME49_208330; Predicted trans-membrane domain (TMHMM2.0):20-40:49-69:75-98
encoded by transcript TGME49_208360; Predicted trans-membrane domain (TMHMM2.0):325-348:762-785
encoded by transcript TGME49_208370; Predicted trans-membrane domain (TMHMM2.0):6-26:968-991
encoded by transcript TGME49_208380; Signal peptide predicted by SignalP 2.0 HMM (probability 0.703) with cleavage site probability 0.580 at residue 23
Sodium:neurotransmitter symporter family protein
serine proteinase inhibitor PI-2, putative
encoded by transcript TGME49_208440; Signal peptide predicted by SignalP 2.0 HMM (probability 0.535) with cleavage site probability 0.378 at residue 28
encoded by transcript TGME49_208450; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.937 at residue 23
DEAD/DEAH box helicase domain-containing protein
encoded by transcript TGME49_208550; Predicted trans-membrane domain (TMHMM2.0):34-54
encoded by transcript TGME49_208560; Predicted trans-membrane domain (TMHMM2.0):77-100
ubiquitin conjugating enzyme E2, putative
encoded by transcript TGME49_208580; Signal peptide predicted by SignalP 2.0 HMM (probability 0.813) with cleavage site probability 0.475 at residue 48; Predicted trans-membrane domain (TMHMM2.0):9-32:33-56:70-85:105-128
vacuolar ATP synthase subunit 54kD, putative
protein tyrosine phosphatase type IVA A, putative
encoded by transcript TGME49_208730; Predicted trans-membrane domain (TMHMM2.0):6-29
encoded by transcript TGME49_208770; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.972 at residue 27
ubiquitin-conjugating enzyme subfamily protein
encoded by transcript TGME49_208790; Signal peptide predicted by SignalP 2.0 HMM (probability 0.568) with cleavage site probability 0.259 at residue 15
encoded by transcript TGME49_208800; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_208850; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.996) with cleavage site probability 0.411 at residue 24
RNA recognition motif-containing protein
encoded by transcript TGME49_208980; Signal peptide predicted by SignalP 2.0 HMM (probability 0.966) with cleavage site probability 0.486 at residue 24
HECT-domain (ubiquitin-transferase) domain-containing protein
encoded by transcript TGME49_209030; Gene product name based on ToxoDB Community Expert Annotation.
thrombospondin type 1 domain-containing protein
encoded by transcript TGME49_209060; Signal peptide predicted by SignalP 2.0 HMM (probability 0.508) with cleavage site probability 0.361 at residue 25; Predicted trans-membrane domain (TMHMM2.0):762-785
transport protein particle (trapp) component, bet3 protein
proteasome maturation factor ump1 protein
encoded by transcript TGME49_209090; Signal peptide predicted by SignalP 2.0 HMM (probability 0.962) with cleavage site probability 0.702 at residue 23
encoded by transcript TGME49_209120; Predicted trans-membrane domain (TMHMM2.0):44-67
regulator of chromosome condensation (RCC1) repeat-containing protein
anti-silencing protein, ASF1 family protein
non-proton pumping type-II NADH dehydrogenase I
encoded by transcript TGME49_209150; Product name based on PMID:18786503.
myristoyl CoA:protein N-myristoyltransferase
encoded by transcript TGME49_209170; Signal peptide predicted by SignalP 2.0 HMM (probability 0.936) with cleavage site probability 0.717 at residue 46
encoded by transcript TGME49_209180; Signal peptide predicted by SignalP 2.0 HMM (probability 0.988) with cleavage site probability 0.481 at residue 34
ABC transporter transmembrane region domain-containing protein
encoded by transcript TGME49_209190; Predicted trans-membrane domain (TMHMM2.0):37-60:95-118:130-153:231-251:315-338
encoded by transcript TGME49_209250; Predicted trans-membrane domain (TMHMM2.0):39-62
encoded by transcript TGME49_209290; Signal peptide predicted by SignalP 2.0 HMM (probability 0.617) with cleavage site probability 0.301 at residue 38
WD domain, G-beta repeat-containing protein
encoded by transcript TGME49_209470; Signal peptide predicted by SignalP 2.0 HMM (probability 0.919) with cleavage site probability 0.899 at residue 28
encoded by transcript TGME49_209485; Signal peptide predicted by SignalP 2.0 HMM (probability 0.574) with cleavage site probability 0.239 at residue 20
encoded by transcript TGME49_209510; Signal peptide predicted by SignalP 2.0 HMM (probability 0.613) with cleavage site probability 0.310 at residue 39; Predicted trans-membrane domain (TMHMM2.0):11-34
encoded by transcript TGME49_209530; Predicted trans-membrane domain (TMHMM2.0):106-129:290-310
encoded by transcript TGME49_209570; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_209580; Predicted trans-membrane domain (TMHMM2.0):19-42
encoded by transcript TGME49_209590; Predicted trans-membrane domain (TMHMM2.0):91-114:150-169:198-221
encoded by transcript TGME49_209610; Product name based on PMID:20708619.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.845) with cleavage site probability 0.470 at residue 20
eukaryotic aspartyl protease superfamily protein
encoded by transcript TGME49_209620; Signal peptide predicted by SignalP 2.0 HMM (probability 0.987) with cleavage site probability 0.367 at residue 21
encoded by transcript TGME49_209705; Signal peptide predicted by SignalP 2.0 HMM (probability 0.966) with cleavage site probability 0.435 at residue 23
encoded by transcript TGME49_209710; Signal peptide predicted by SignalP 2.0 HMM (probability 0.991) with cleavage site probability 0.518 at residue 30; Predicted trans-membrane domain (TMHMM2.0):8-31
encoded by transcript TGME49_209720; Signal peptide predicted by SignalP 2.0 HMM (probability 0.753) with cleavage site probability 0.308 at residue 31; Predicted trans-membrane domain (TMHMM2.0):8-31:45-68:87-110:199-217
encoded by transcript TGME49_209790; Predicted trans-membrane domain (TMHMM2.0):591-614
encoded by transcript TGME49_209810; Signal peptide predicted by SignalP 2.0 HMM (probability 0.953) with cleavage site probability 0.656 at residue 31; Predicted trans-membrane domain (TMHMM2.0):11-34:53-76:88-111:114-137:172-195:216-239:245- 268:289-307
encoded by transcript TGME49_209820; Predicted trans-membrane domain (TMHMM2.0):114-137:196-216:225-248:624-647
SRP40, C-terminal domain-containing protein
encoded by transcript TGME49_209910; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_209945; Predicted trans-membrane domain (TMHMM2.0):14-37
encoded by transcript TGME49_209950; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.839 at residue 23
encoded by transcript TGME49_209985; Signal peptide predicted by SignalP 2.0 HMM (probability 0.995) with cleavage site probability 0.969 at residue 26
encoded by transcript TGME49_210095; Signal peptide predicted by SignalP 2.0 HMM (probability 0.997) with cleavage site probability 0.938 at residue 26; Predicted trans-membrane domain (TMHMM2.0):4-27
encoded by transcript TGME49_321710; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.939 at residue 26; Predicted trans-membrane domain (TMHMM2.0):4-27
encoded by transcript TGME49_321700; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.940 at residue 26; Predicted trans-membrane domain (TMHMM2.0):4-27
encoded by transcript TGME49_321690; Predicted trans-membrane domain (TMHMM2.0):748-771:777-800
encoded by transcript TGME49_321650; Predicted trans-membrane domain (TMHMM2.0):69-92
encoded by transcript TGME49_321640; Product name based on PMID:19808683.; Predicted trans-membrane domain (TMHMM2.0):28-51
encoded by transcript TGME49_321620; Product name based on PMID:20444089;19217293.
encoded by transcript TGME49_321580; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.439 at residue 23
beta-hydroxyacyl-acyl carrier protein dehydratase (FABZ)
encoded by transcript TGME49_321570; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.899 at residue 21
encoded by transcript TGME49_321520; Predicted trans-membrane domain (TMHMM2.0):128-151
encoded by transcript TGME49_321490; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.922) with cleavage site probability 0.415 at residue 40; Predicted trans-membrane domain (TMHMM2.0):20-40
encoded by transcript TGME49_321480; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.996) with cleavage site probability 0.537 at residue 39; Predicted trans-membrane domain (TMHMM2.0):20-43
encoded by transcript TGME49_321470; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.962) with cleavage site probability 0.733 at residue 63; Predicted trans-membrane domain (TMHMM2.0):3-26:46-64
Myb family DNA-binding domain-containing protein
encoded by transcript TGME49_321440; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_321410; Predicted trans-membrane domain (TMHMM2.0):1867-1887
microsomal signal peptidase (spc12) domain-containing protein
encoded by transcript TGME49_321400; Predicted trans-membrane domain (TMHMM2.0):29-52:55-78
encoded by transcript TGME49_321340; Predicted trans-membrane domain (TMHMM2.0):3559-3582:3739-3759:3768-3791
16S rRNA processing protein RimM domain-containing protein
encoded by transcript TGME49_321310; Signal peptide predicted by SignalP 2.0 HMM (probability 0.997) with cleavage site probability 0.980 at residue 32; Predicted trans-membrane domain (TMHMM2.0):12-35
autophagy-related 12 variant 1, putative
encoded by transcript TGME49_321280; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.824 at residue 26; Predicted trans-membrane domain (TMHMM2.0):6-26
encoded by transcript TGME49_321270; Predicted trans-membrane domain (TMHMM2.0):23-46