Toxoplasma gondii ME49 chromosome Ia, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma.
Submitted (18-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (25-APR-2013) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
ABPA02000001 and ABPA02000002 sequences updated by submitter
Submitted (31-JUL-2012) J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM002034.\nThis work was supported by the National Institute of Allergy and\nInfectious Diseases (NIAID), Genome Sequencing Centers for\nInfectious Diseases (GSCID) program. This sequence record is\nco-owned by JCVI and EuPathDB. Additional Toxoplasma gondii\nresources are available at ToxoDB, http://toxodb.org/toxo/ and at\nJCVI, http://gsc.jcvi.org/projects/gsc/t_gondii/index.shtml.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1.92\nAssembly Name :: TGA4\nGenome Coverage :: 26.55x\nSequencing Technology :: 454 GS FLX Titanium; Sanger\n##Genome-Assembly-Data-END##
encoded by transcript TGME49_287280; Predicted trans-membrane domain (TMHMM2.0):34-54:136-159
encoded by transcript TGME49_292960; Signal peptide predicted by SignalP 2.0 HMM (probability 0.998) with cleavage site probability 0.179 at residue 43; Predicted trans-membrane domain (TMHMM2.0):9-29:395-418:437-460:466-489:513-536
3'5'-cyclic nucleotide phosphodiesterase domain-containing protein
encoded by transcript TGME49_293040; Signal peptide predicted by SignalP 2.0 HMM (probability 0.906) with cleavage site probability 0.370 at residue 38; Predicted trans-membrane domain (TMHMM2.0):11-34:48-71
endonuclease/exonuclease/phosphatase family protein
encoded by transcript TGME49_293200; Signal peptide predicted by SignalP 2.0 HMM (probability 0.985) with cleavage site probability 0.444 at residue 26; Predicted trans-membrane domain (TMHMM2.0):6-25:39-62
encoded by transcript TGME49_293210; Predicted trans-membrane domain (TMHMM2.0):44-62:66-86
DHHC zinc finger domain-containing protein
encoded by transcript TGME49_293220; Predicted trans-membrane domain (TMHMM2.0):1125-1148:1160-1183
ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein
encoded by transcript TGME49_293300; Predicted trans-membrane domain (TMHMM2.0):229-252:261-284:308-331:340-360:372-395
encoded by transcript TGME49_293320; Predicted trans-membrane domain (TMHMM2.0):84-107:118-141
mitochondrial carrier superfamily protein
histone arginine methyltransferase PRMT2
encoded by transcript TGME49_293370; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_293380; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_293400; Predicted trans-membrane domain (TMHMM2.0):207-230
encoded by transcript TGME49_293410; Predicted trans-membrane domain (TMHMM2.0):9-29
transporter, major facilitator family protein
encoded by transcript TGME49_293430; Predicted trans-membrane domain (TMHMM2.0):94-117:126-149:155-178:354-377
encoded by transcript TGME49_293440; Predicted trans-membrane domain (TMHMM2.0):196-219:223-246:252-275:479-502
protein phosphatase 2c containing protein
ATP-dependent DNA ligase domain-containing protein
MoeA N-terminal region (domain I and II) domain-containing protein
encoded by transcript TGME49_293490; Predicted trans-membrane domain (TMHMM2.0):317-340
encoded by transcript TGME49_293500; Signal peptide predicted by SignalP 2.0 HMM (probability 0.643) with cleavage site probability 0.238 at residue 36; Predicted trans-membrane domain (TMHMM2.0):19-42
poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region domain-containing protein
encoded by transcript TGME49_293570; Predicted trans-membrane domain (TMHMM2.0):141-164:178-201
3-oxoacyl-acyl-carrier protein synthase I/II, putative
encoded by transcript TGME49_293590; Signal peptide predicted by SignalP 2.0 HMM (probability 0.984) with cleavage site probability 0.919 at residue 35; Predicted trans-membrane domain (TMHMM2.0):15-38
encoded by transcript TGME49_293600; Signal peptide predicted by SignalP 2.0 HMM (probability 0.991) with cleavage site probability 0.353 at residue 19
encoded by transcript TGME49_293670; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_293680; Signal peptide predicted by SignalP 2.0 HMM (probability 0.588) with cleavage site probability 0.291 at residue 58; Predicted trans-membrane domain (TMHMM2.0):30-53
encoded by transcript TGME49_293690; Gene product name based on ToxoDB Community Expert Annotation.
WD domain, G-beta repeat-containing protein
Zn-finger in Ran binding protein and others domain-containing protein
encoded by transcript TGME49_293730; Predicted trans-membrane domain (TMHMM2.0):629-652:664-687
encoded by transcript TGME49_293760; Signal peptide predicted by SignalP 2.0 HMM (probability 0.685) with cleavage site probability 0.393 at residue 33
encoded by transcript TGME49_293770; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_293800; Predicted trans-membrane domain (TMHMM2.0):41-59:73-93:135-158
carboxyvinyl-carboxyphosphonate phosphorylmutase
calpain family cysteine protease domain-containing protein
methyltransferase domain-containing protein
encoded by transcript TGME49_293850; Predicted trans-membrane domain (TMHMM2.0):6-29
intraflagellar transport 80 family protein
sporozoite protein with an altered thrombospondin repeat SPATR
zinc finger, C3HC4 type (RING finger) domain-containing protein
encoded by transcript TGME49_294020; Predicted trans-membrane domain (TMHMM2.0):302-325:389-412
KDEL endoplasmic reticulum proteinretention receptor 2 (KDELR2), putative
encoded by transcript TGME49_294040; Signal peptide predicted by SignalP 2.0 HMM (probability 0.958) with cleavage site probability 0.467 at residue 22; Predicted trans-membrane domain (TMHMM2.0):12-35:86-109:121-139:182-205:211-234
encoded by transcript TGME49_294050; Signal peptide predicted by SignalP 2.0 HMM (probability 0.965) with cleavage site probability 0.287 at residue 31; Predicted trans-membrane domain (TMHMM2.0):529-552
enoyl-CoA hydratase/isomerase family protein
encoded by transcript TGME49_294200; Signal peptide predicted by SignalP 2.0 HMM (probability 0.810) with cleavage site probability 0.526 at residue 28; Predicted trans-membrane domain (TMHMM2.0):12-35
encoded by transcript TGME49_294220; Predicted trans-membrane domain (TMHMM2.0):245-263
encoded by transcript TGME49_294225; Predicted trans-membrane domain (TMHMM2.0):47-70
encoded by transcript TGME49_294240; Signal peptide predicted by SignalP 2.0 HMM (probability 0.967) with cleavage site probability 0.777 at residue 37; Predicted trans-membrane domain (TMHMM2.0):317-340:346-366
encoded by transcript TGME49_294250; Predicted trans-membrane domain (TMHMM2.0):404-427
encoded by transcript TGME49_294260; Gene product name based on ToxoDB Community Expert Annotation. Predicted member of protein kinase subfamily Other;NEK;NEK1, (PMID:22047078).
histone arginine methyltransferase PRMT4/CARM1
encoded by transcript TGME49_294270; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_294290; Product name based on PMID:19808683.; Predicted trans-membrane domain (TMHMM2.0):33-56:68-91:100-123:127-150:159-182
encoded by transcript TGME49_294300; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.940 at residue 27
encoded by transcript TGME49_294330; Predicted trans-membrane domain (TMHMM2.0):20-43:1065-1088
encoded by transcript TGME49_294340; Predicted trans-membrane domain (TMHMM2.0):289-312
DEAD/DEAH box helicase domain-containing protein
ubiquitin specific protease 39 isoform 2, putative
encoded by transcript TGME49_294370; Predicted trans-membrane domain (TMHMM2.0):43-62:71-94
encoded by transcript TGME49_294400; Signal peptide predicted by SignalP 2.0 HMM (probability 0.882) with cleavage site probability 0.569 at residue 26
encoded by transcript TGME49_294410; Signal peptide predicted by SignalP 2.0 HMM (probability 0.995) with cleavage site probability 0.650 at residue 44
programmed cell death protein 2, c-terminal domain-containing protein
rhoptry kinase family protein ROP37 (incomplete catalytic triad)
encoded by transcript TGME49_294560; Signal peptide predicted by SignalP 2.0 HMM (probability 0.861) with cleavage site probability 0.477 at residue 20
rhodanese family domain-containing protein
encoded by transcript TGME49_294600; Signal peptide predicted by SignalP 2.0 HMM (probability 0.967) with cleavage site probability 0.784 at residue 20
histone lysine methyltransferase, SET, putative
encoded by transcript TGME49_294610; Gene product name based on ToxoDB Community Expert Annotation.
eukaryotic initiation factor-3, subunit 8, putative
ribonucleoside-diphosphate reductase large chain
encoded by transcript TGME49_294690; Gene product name based on ToxoDB Community Expert Annotation.; Predicted trans-membrane domain (TMHMM2.0):322-345:497-520:523-546:557-580:583-606:668- 691
RNA recognition motif-containing protein
Armadillo/beta-catenin family repeat-containing protein
zinc finger (CCCH type) motif-containing protein
elongation factor 1-alpha (EF-1-ALPHA), putative
encoded by transcript TGME49_294808; Signal peptide predicted by SignalP 2.0 HMM (probability 0.986) with cleavage site probability 0.975 at residue 23
encoded by transcript TGME49_294850; Gene product name based on ToxoDB Community Expert Annotation.
8-oxoguanine DNA glycosylase, N-terminal domain-containing protein
encoded by transcript TGME49_294880; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.378 at residue 112; Predicted trans-membrane domain (TMHMM2.0):9-27:33-56
tetratricopeptide repeat-containing protein
general transcription factor IIH polypeptide 2 GTF2H2
encoded by transcript TGME49_294920; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_294940; Predicted trans-membrane domain (TMHMM2.0):150-173
encoded by transcript TGME49_294980; Predicted trans-membrane domain (TMHMM2.0):27-50
encoded by transcript TGME49_294990; Signal peptide predicted by SignalP 2.0 HMM (probability 0.780) with cleavage site probability 0.164 at residue 18
Sterol-sensing domain of SREBP cleavage-activation domain-containing protein
encoded by transcript TGME49_295035; Predicted trans-membrane domain (TMHMM2.0):62-85:94-112
tRNA ligase class II core domain (G, H, P, S and T) domain-containing protein
encoded by transcript TGME49_295050; Signal peptide predicted by SignalP 2.0 HMM (probability 0.930) with cleavage site probability 0.871 at residue 18
helicase associated domain (ha2) protein
encoded by transcript TGME49_295090; Predicted trans-membrane domain (TMHMM2.0):434-457:469-492:518-541:683-706
encoded by transcript TGME49_295105; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.923) with cleavage site probability 0.484 at residue 33; Predicted trans-membrane domain (TMHMM2.0):11-34
encoded by transcript TGME49_295110; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.973) with cleavage site probability 0.510 at residue 33; Predicted trans-membrane domain (TMHMM2.0):11-34
encoded by transcript TGME49_295125; Gene product name based on ToxoDB Community Expert Annotation.; Signal peptide predicted by SignalP 2.0 HMM (probability 0.992) with cleavage site probability 0.556 at residue 33; Predicted trans-membrane domain (TMHMM2.0):12-32
ubiquitin conjugating enzyme E2, putative
encoded by transcript TGME49_295990; Signal peptide predicted by SignalP 2.0 HMM (probability 0.988) with cleavage site probability 0.619 at residue 45; Predicted trans-membrane domain (TMHMM2.0):24-47
encoded by transcript TGME49_295980; Predicted trans-membrane domain (TMHMM2.0):689-712:718-741
encoded by transcript TGME49_295950; This gene belongs to the Lysine-Arginine rich Unidentified Function (KRUF) family of Toxoplasma-expanded genes.
encoded by transcript TGME49_295935; This gene belongs to the Lysine-Arginine rich Unidentified Function (KRUF) family of Toxoplasma-expanded genes.
ATP-dependent Clp protease adaptor protein ClpS protein
encoded by transcript TGME49_295910; Signal peptide predicted by SignalP 2.0 HMM (probability 1.000) with cleavage site probability 0.820 at residue 24
cyclic nucleotide-binding domain-containing protein
encoded by transcript TGME49_295760; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_295750; Signal peptide predicted by SignalP 2.0 HMM (probability 0.725) with cleavage site probability 0.300 at residue 17
HECT-domain (ubiquitin-transferase) domain-containing protein
ubiquinone/menaquinone biosynthesis methyltransferase subfamily protein
periodic tryptophan protein PWP2, putative
encoded by transcript TGME49_295630; Predicted trans-membrane domain (TMHMM2.0):31-54
encoded by transcript TGME49_295610; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_295600; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_295472; Predicted trans-membrane domain (TMHMM2.0):1542-1565
encoded by transcript TGME49_295460; Predicted trans-membrane domain (TMHMM2.0):6-26:30-50:69-92
sjoegren syndrome nuclear autoantigen 1 family protein
encoded by transcript TGME49_295440; Predicted trans-membrane domain (TMHMM2.0):49-72
encoded by transcript TGME49_295430; Signal peptide predicted by SignalP 2.0 HMM (probability 0.999) with cleavage site probability 0.849 at residue 31; Predicted trans-membrane domain (TMHMM2.0):11-29
transcription initiation factor TFIID complex subunit TAF6
encoded by transcript TGME49_295410; Gene product name based on ToxoDB Community Expert Annotation.
encoded by transcript TGME49_295390; Signal peptide predicted by SignalP 2.0 HMM (probability 0.996) with cleavage site probability 0.266 at residue 48
UV excision repair protein Rad23 protein
embryo sac development arrest EDA7, putative
encoded by transcript TGME49_295300; Signal peptide predicted by SignalP 2.0 HMM (probability 0.992) with cleavage site probability 0.356 at residue 21; Predicted trans-membrane domain (TMHMM2.0):97-117