Lactobacillus taiwanensis strain CLG01 plasmid unnamed2, complete sequence.
type: Entry
definition: Lactobacillus taiwanensis strain CLG01 plasmid unnamed2, complete sequence.
sequence version: NZ_CP059278.1
sequence date: 2023-03-20
sequence: sequence
division: CON
label: NZ_CP059278.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15573980
keyword: RefSeq
source: Lactobacillus taiwanensis
organism: Lactobacillus taiwanensis
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
reference: 1
references: 33639835
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP059278.1.\nBacteria and source DNA available from Laboratory of Translational\nGastroenterology,Qilu Hospital,Cheloo College of Medicine,Shandong\nUniversity,Jinan,Shandong,China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. 2.0.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1000.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 03:13:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,041\nCDSs (total) :: 1,940\nGenes (coding) :: 1,852\nCDSs (with protein) :: 1,852\nGenes (RNA) :: 101\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 3\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 53 of 88\nPseudo Genes (incomplete) :: 49 of 88\nPseudo Genes (internal stop) :: 29 of 88\nPseudo Genes (multiple problems) :: 36 of 88\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 10527
topology: circular
so has quality: SO_0000988
location: 1..10527
location: region:1-10527:1
RO_0002162: 508451

NZ_CP059278
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15573980
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequencing of Peyer's patches-derived Lactobacillus taiwanensis CLG01, a potential probiotic with antibacterial and immunomodulatory activity
author: Li, X.Y.
author: Li, L.X.
author: Li, Y.
author: Zhou, R.C.
author: Li, B.
author: Gu, X.
author: Fu, S.C.
author: Jin, B.Y.
author: Zuo, X.L.
author: Li, Y.Q.
journal: BMC Microbiol 21 (1), 68 (2021)
pubmed: 33639835
comments: Publication Status: Online-Only

33639835
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Li, X.
journal: Submitted (18-JUL-2020) Department of Gastroenterology, China, Shandong University, Cheloo College of Medicine, Qilu Hospital, No. 107 Wenhua West Road, Lixia District, Jinan, Shandong 250000, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10527:1
position: 10527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10527:1:source
so part of: sequence
organism: Lactobacillus taiwanensis
mol type: genomic DNA
strain: CLG01
host: Mus musculus
plasmid: unnamed2
country: China:Jinan
collection date: 2019-06-30

508451
type: Taxonomy
SIO_000068: taxonomy

H1A07_RS09925
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09925
old locus tag: H1A07_09915
so part of: sequence
location: join(10232..10527,1..448)
location: region:1-10527:1
so has part: feature:10232-10527:1:exon
so has part: feature:1-448:1:exon
subclass of: SO_0000010

64334774
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:10232-10527:1:exon

position:10232:1
position: 10232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-448:1:exon

position:448:1
position: 448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

H1A07_RS09925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09925
old locus tag: H1A07_09915
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: LysM domain-containing protein
translation: MSNYPRIALVDALTPGAPEHYQKLAKSGVKDVIVCLSLSHFDRYRAGEYHTLLAREIGMRTHACLVTDLSEPFHDARHFFTAYQKLGYSFGTKVMILCQASKNVKNTGQKLTELLGYISYFVSKGDIDVAFNKKDLDRGYFNVNEIPDYFNLTIINPRQINSGIDRAGTWISTKDFDSDIQYLGYDYYGFYTSQGYQMTLEPEYIAQEGDTWVTIATRHGIWLPKLLELNKADYEDIVVPGQKVRLF
SIO_010081: H1A07_RS09925
subclass of: SO_0000673
so part of: H1A07_RS09925
location: join(10232..10527,1..448)
location: region:1-10527:1
so has part: feature:10232-10527:1:exon
so has part: feature:1-448:1:exon

WP_210145773.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10232-10527:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-448:1:exon

H1A07_RS09930
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09930
old locus tag: H1A07_09920
so part of: sequence
location: complement(1186..2802)
location: region:1186-2802:-1
so has part: feature:1186-2802:-1:exon
subclass of: SO_0000010

64334775
type: Gene
SIO_000068: ncbigene

position:1186:-1
position: 1186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2802:-1
position: 2802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1186-2802:-1:exon

H1A07_RS09930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09930
old locus tag: H1A07_09920
inference: COORDINATES: protein motif:HMM:NF014442.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MLNSLEKSIGKEYTPDNLAEYMAYALKEAVEKYAQETETKKIIDPSCGDGSLLKAIEKYFSNYEAIGIDIDDIALNKAKSCLNLSNTTLIKEDFIDSINSLYESADMIIANPPYINTSVLGSKKSQELAKQFNLKGKVDMYHAFIIGMTEILKQNGIACFITSNKYLTNKSGSSIRKYLNDNYKILEIIDLGDTKMFSASVLPAIFIGYKQRNADNREVNFKRIYEQDKLDAYKVASSGELLMAESGNYTLDNKTYEVVQGVLDATQSKDPWHMASKEDNDWATRLENNADCQFSDVLEIHVGIKTTADNVFIRDDWNKLDSAITPEHKVLHQLISSRNISKWLTTNKDMNEILYTHEMQNGKRVAINFSKKYPKAWAYLNQHKEQLAGRKYIQKVKRQWYEIWVPQNPGKMNQNKIVFPDIRESACFCYDNKGMYVDGNCYWGITKNGINDDYLLLATAVANSKVMEKYHNIKFQNVLYSGRKRYVTQYINNYLLPNIDNKYSQKIIKLMNQILDTGTYTAKDESKLNDAVAKAFMI
SIO_010081: H1A07_RS09930
subclass of: SO_0000673
so part of: H1A07_RS09930
location: complement(1186..2802)
location: region:1186-2802:-1
so has part: feature:1186-2802:-1:exon

WP_210145775.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1186-2802:-1:exon

H1A07_RS09935
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09935
old locus tag: H1A07_09925
so part of: sequence
location: 2883..3113
location: region:2883-3113:1
so has part: feature:2883-3113:1:exon
subclass of: SO_0000010

64334776
type: Gene
SIO_000068: ncbigene

position:2883:1
position: 2883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3113:1
position: 3113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2883-3113:1:exon

H1A07_RS09935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09935
old locus tag: H1A07_09925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017474987.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MNSNKTLLAIGKAIRYFREDRKWTQEYLGFKANLDRTYIGGAERGERNMTINTIITIAKALDINFYDLIKKAAEYE
SIO_010081: H1A07_RS09935
subclass of: SO_0000673
so part of: H1A07_RS09935
location: 2883..3113
location: region:2883-3113:1
so has part: feature:2883-3113:1:exon

WP_210145778.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2883-3113:1:exon

H1A07_RS09940
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09940
old locus tag: H1A07_09930
so part of: sequence
location: 3106..4161
location: region:3106-4161:1
so has part: feature:3106-4161:1:exon
subclass of: SO_0000010

64334777
type: Gene
SIO_000068: ncbigene

position:3106:1
position: 3106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4161:1
position: 4161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3106-4161:1:exon

H1A07_RS09940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09940
old locus tag: H1A07_09930
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: restriction endonuclease
translation: MNNIIENAIRIRNNIISSNQTIDDINTPDNVDTWLPNEELEYLLSKDLIGKNFDFPPRTRSKKINQAICAALGYPIPKTFKKNKPRFLCQNFDKYAQQSNNLQIWNDSVSLTRRYCIIILDEDNIVINVKVLSGGTLQDYDTTHKLTQKYQASLDKSNDPSNTLLSSTDTSEIIKTFGTFKEISSSSPADLPKPNELMTIKELHNKLQVLEHTSFPFTGKSRVDGDALQDLVYRALGYKEYRENGQLPDLLNQLLEIKKQLSPTVDLGLFKPDETIELEMPSVNGYIPTISDVRYAIFYCSQNENQITIEKIYLVTGKEFFKYFNLFEGKRINKKLQLHLPKELWEVPSNN
SIO_010081: H1A07_RS09940
subclass of: SO_0000673
so part of: H1A07_RS09940
location: 3106..4161
location: region:3106-4161:1
so has part: feature:3106-4161:1:exon

WP_210145781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3106-4161:1:exon

H1A07_RS09945
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09945
old locus tag: H1A07_09935
so part of: sequence
location: complement(4238..4612)
location: region:4238-4612:-1
so has part: feature:4238-4612:-1:exon
subclass of: SO_0000010

64334778
type: Gene
SIO_000068: ncbigene

position:4238:-1
position: 4238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4612:-1
position: 4612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4238-4612:-1:exon

H1A07_RS09945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09945
old locus tag: H1A07_09935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003672132.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5388 domain-containing protein
translation: MAKFEFKKDTKKEAKKPRPVKKTEISKPQETYDPMKTTQKVEKDLETKVEKRRVGRPKTGRKSYQTVRLQKSTVIKINALENALGITTQDETVDQAIDRVINNLTTDEKRGYDLWLEMFKKKGK
SIO_010081: H1A07_RS09945
subclass of: SO_0000673
so part of: H1A07_RS09945
location: complement(4238..4612)
location: region:4238-4612:-1
so has part: feature:4238-4612:-1:exon

WP_210145784.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4238-4612:-1:exon

H1A07_RS09950
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09950
old locus tag: H1A07_09940
so part of: sequence
location: complement(4605..5495)
location: region:4605-5495:-1
so has part: feature:4605-5495:-1:exon
subclass of: SO_0000010

64334779
type: Gene
SIO_000068: ncbigene

position:4605:-1
position: 4605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5495:-1
position: 5495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4605-5495:-1:exon

H1A07_RS09950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09950
old locus tag: H1A07_09940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004899011.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MMTTLLFGNMKGGVGKTTNSVMVAYQLAKMGYKTLVCDLDPQANATQLLRRTYGLQHDGEDLKIDKTMMVALSEQDIKSAIVNIMDNLDLLPSSEDFKSYPDFLELTFMPDKEKIAENPSSLQSEMSAVKEQRISYFAKQLEKVKDDYDVVVIDVPPTLSVFTDSAIYATDEVVIVLQTQQRSLDGAETFFEYLQQMYNSYSDVDFDILGVLPVLLKTRSGLDDQILEDAKEDFGEDALFEQIIHHMERLKRYDRTGIADHELTKADIHDRKIHYIYSELTKEIVERLKSKDMLNG
SIO_010081: H1A07_RS09950
subclass of: SO_0000673
so part of: H1A07_RS09950
location: complement(4605..5495)
location: region:4605-5495:-1
so has part: feature:4605-5495:-1:exon

WP_210145787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4605-5495:-1:exon

H1A07_RS09955
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09955
old locus tag: H1A07_09945
so part of: sequence
location: 6874..7086
location: region:6874-7086:1
so has part: feature:6874-7086:1:exon
subclass of: SO_0000010

64334780
type: Gene
SIO_000068: ncbigene

position:6874:1
position: 6874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7086:1
position: 7086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6874-7086:1:exon

H1A07_RS09955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09955
old locus tag: H1A07_09945
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVETSFLSKKLRIDYMVEGAEKVKSLTLANLNKNVSSEQLGQIVEGLKPLINGQIAKIYVTEVTHGIAE
SIO_010081: H1A07_RS09955
subclass of: SO_0000673
so part of: H1A07_RS09955
location: 6874..7086
location: region:6874-7086:1
so has part: feature:6874-7086:1:exon

WP_210145758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6874-7086:1:exon

H1A07_RS09960
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09960
old locus tag: H1A07_09950
so part of: sequence
location: 7107..7340
location: region:7107-7340:1
so has part: feature:7107-7340:1:exon
subclass of: SO_0000010

64334781
type: Gene
SIO_000068: ncbigene

position:7107:1
position: 7107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7340:1
position: 7340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7107-7340:1:exon

H1A07_RS09960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09960
old locus tag: H1A07_09950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004041467.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2922 domain-containing protein
translation: MSKKVLKLNFKNEKGKTKTITIANPKEGLDKAVVQDSMSKIAGAKAFSKEEVALYETVDSAKYYTTQSDDIFDNDAE
SIO_010081: H1A07_RS09960
subclass of: SO_0000673
so part of: H1A07_RS09960
location: 7107..7340
location: region:7107-7340:1
so has part: feature:7107-7340:1:exon

WP_210145761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7107-7340:1:exon

H1A07_RS10365
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS10365
so part of: sequence
location: 7657..7737
location: region:7657-7737:1
so has part: feature:7657-7737:1:exon
subclass of: SO_0000010

71774394
type: Gene
SIO_000068: ncbigene

position:7657:1
position: 7657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7737:1
position: 7737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7657-7737:1:exon

H1A07_RS10365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS10365
inference: COORDINATES: protein motif:HMM:NF024249.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIETKLDSLTNAVVQLSDAIRTPHN
SIO_010081: H1A07_RS10365
subclass of: SO_0000673
so part of: H1A07_RS10365
location: 7657..7737
location: region:7657-7737:1
so has part: feature:7657-7737:1:exon

WP_244974201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7657-7737:1:exon

H1A07_RS10370
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS10370
pseudo: true
so part of: sequence
location: 7769..>8035
location: region:7769-8035:1
so has part: feature:7769-8035:1:exon
subclass of: SO_0000010

71774395
type: Gene
SIO_000068: ncbigene

position:7769:1
position: 7769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8035:1
position: 8035
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7769-8035:1:exon

H1A07_RS10370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS10370
inference: COORDINATES: protein motif:HMM:NF024502.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: H1A07_RS10370
subclass of: SO_0000673
so part of: H1A07_RS10370
location: 7769..>8035
location: region:7769-8035:1
so has part: feature:7769-8035:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7769-8035:1:exon

H1A07_RS09970
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09970
old locus tag: H1A07_09960
so part of: sequence
location: 8036..8608
location: region:8036-8608:1
so has part: feature:8036-8608:1:exon
subclass of: SO_0000010

64334783
type: Gene
SIO_000068: ncbigene

position:8036:1
position: 8036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8608:1
position: 8608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8036-8608:1:exon

H1A07_RS09970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09970
old locus tag: H1A07_09960
inference: COORDINATES: protein motif:HMM:NF012798.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSSTVVSPDYYPKSTETRRIRRLSDTELRVFKSYLDTLQENARAAFYLMMGTGCRVGEAAHLRVSDISLRGKSVYVDIKDAKWGSDRCIPITDKKAAQIVWRYCEGVEIDTHPLFRLSKRTIQGYATTFAQKTGITFRCHLLRHTYAALLTEQGVPMPTIQYLLGHKSLGMTVHYTQSAITDLKDLTPEI
SIO_010081: H1A07_RS09970
subclass of: SO_0000673
so part of: H1A07_RS09970
location: 8036..8608
location: region:8036-8608:1
so has part: feature:8036-8608:1:exon

WP_244974202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8036-8608:1:exon

H1A07_RS09975
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09975
old locus tag: H1A07_09965
so part of: sequence
location: 8630..8971
location: region:8630-8971:1
so has part: feature:8630-8971:1:exon
subclass of: SO_0000010

64334784
type: Gene
SIO_000068: ncbigene

position:8630:1
position: 8630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8971:1
position: 8971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8630-8971:1:exon

H1A07_RS09975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09975
old locus tag: H1A07_09965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004898995.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MNDIKLLGRLTAAPELKKSQAGHTYTWFTVAVPRKNDKQEADFIRCVAFGKLATAMEKYCVKGRQVLVQGRLQVSQSTDQKTQETKYHHTVVAHAANFLHDPKFSAASAEAPF
SIO_010081: H1A07_RS09975
subclass of: SO_0000673
so part of: H1A07_RS09975
location: 8630..8971
location: region:8630-8971:1
so has part: feature:8630-8971:1:exon

WP_210145767.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8630-8971:1:exon

H1A07_RS09980
type: Gene
subclass of: SO_0000704
RO_0002162: 508451
locus tag: H1A07_RS09980
old locus tag: H1A07_09970
so part of: sequence
location: 9216..10235
location: region:9216-10235:1
so has part: feature:9216-10235:1:exon
subclass of: SO_0000010

64334785
type: Gene
SIO_000068: ncbigene

position:9216:1
position: 9216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10235:1
position: 10235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9216-10235:1:exon

H1A07_RS09980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 508451
locus tag: H1A07_RS09980
old locus tag: H1A07_09970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013646105.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation factor domain-containing protein
translation: MASYQYLEVIIDWLEFTVLDTTLKDVIDKFLNIPFAHFSPLAKGRFGYHNQLKWKGGHVYIMFTAIGEEISENTRIKQETGIHVMITGQGCRQYSTELSLETLLRRLSALPRVNFSRIDLAIDDYESKILSYDTIHEAALAGYFTSRWSKWDEINSRQTSNGHFLGRTMYFGSQNSDLFCRIYDKSLERKAKSEENPENIPKKWTRLELVYRKDRAKKVVEHLIKGKKPLGHVLRGTLKQYLRFLKPSTDQNKSRWPSAGWWESLLSDVESLQLTIKKERRSIEDMTAWVDKQIAPTMAAILEAQEGDMSWLRKIIIKGSERLTQKHLDAIYSYKEKFS
SIO_010081: H1A07_RS09980
subclass of: SO_0000673
so part of: H1A07_RS09980
location: 9216..10235
location: region:9216-10235:1
so has part: feature:9216-10235:1:exon

WP_210145770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9216-10235:1:exon