Lactobacillus taiwanensis strain CLG01 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
Complete genome sequencing of Peyer's patches-derived Lactobacillus taiwanensis CLG01, a potential probiotic with antibacterial and immunomodulatory activity
Submitted (18-JUL-2020) Department of Gastroenterology, China, Shandong University, Cheloo College of Medicine, Qilu Hospital, No. 107 Wenhua West Road, Lixia District, Jinan, Shandong 250000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP059277.1.\nBacteria and source DNA available from Laboratory of Translational\nGastroenterology,Qilu Hospital,Cheloo College of Medicine,Shandong\nUniversity,Jinan,Shandong,China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. 2.0.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1000.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 03:13:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,041\nCDSs (total) :: 1,940\nGenes (coding) :: 1,852\nCDSs (with protein) :: 1,852\nGenes (RNA) :: 101\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 3\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 53 of 88\nPseudo Genes (incomplete) :: 49 of 88\nPseudo Genes (internal stop) :: 29 of 88\nPseudo Genes (multiple problems) :: 36 of 88\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024367.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006734625.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851314.1
COORDINATES: protein motif:HMM:NF037291.2
VaFE repeat-containing surface-anchored protein
COORDINATES: similar to AA sequence:RefSeq:WP_005729875.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851321.1
COORDINATES: protein motif:HMM:NF021897.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF012948.2
COORDINATES: similar to AA sequence:RefSeq:WP_005725170.1
COORDINATES: protein motif:HMM:NF021030.2
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: protein motif:HMM:NF018196.2
COORDINATES: similar to AA sequence:RefSeq:WP_003685605.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF037081.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:TIGR01865.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
Cas9, originally named Csn1, is the large, multifunctional signature protein of type II CRISPR/Cas systems. It is well known even to general audiences because its RNA-guided endonuclease activity has made it a popular tool for custom editing of eukaryotic genomes; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II CRISPR RNA-guided endonuclease Cas9
COORDINATES: similar to AA sequence:RefSeq:WP_009560126.1
transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: similar to AA sequence:RefSeq:WP_003547788.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037025.2
COORDINATES: similar to AA sequence:RefSeq:WP_006585376.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006734552.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896039.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011161640.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006734654.1
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013851213.1
COORDINATES: protein motif:HMM:TIGR00810.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF012793.2
COORDINATES: similar to AA sequence:RefSeq:WP_011667404.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006734915.1
COORDINATES: similar to AA sequence:RefSeq:WP_005729080.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012846103.1
COORDINATES: protein motif:HMM:NF019142.2
COORDINATES: similar to AA sequence:RefSeq:WP_003654714.1
COORDINATES: similar to AA sequence:RefSeq:WP_006585515.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007124723.1
COORDINATES: similar to AA sequence:RefSeq:WP_005877485.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014563640.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006586714.1
GO:0017148 - negative regulation of translation [Evidence IEA]; GO:0009372 - quorum sensing [Evidence IEA]; GO:0044010 - single-species biofilm formation [Evidence IEA]
type II toxin-antitoxin system MqsR family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007124578.1
COORDINATES: protein motif:HMM:TIGR01784.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: protein motif:HMM:NF018926.2
COORDINATES: similar to AA sequence:RefSeq:WP_003717517.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_005730036.1
COORDINATES: protein motif:HMM:NF037909.2
COORDINATES: similar to AA sequence:RefSeq:WP_004896981.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013851261.1
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005729801.1
COORDINATES: similar to AA sequence:RefSeq:WP_006734565.1
COORDINATES: similar to AA sequence:RefSeq:WP_005729844.1
COORDINATES: similar to AA sequence:RefSeq:WP_006734557.1
COORDINATES: similar to AA sequence:RefSeq:WP_014919235.1
RNA-guided endonuclease TnpB family protein