Leisingera caerulea strain S122 plasmid unnamed6, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
Submitted (10-AUG-2021) College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao, Shandong 266003, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP081076.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMART Link v. v5.0.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/13/2022 09:03:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,415\nCDSs (total) :: 4,342\nGenes (coding) :: 4,307\nCDSs (with protein) :: 4,307\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 35\nCDSs (without protein) :: 35\nPseudo Genes (ambiguous residues) :: 0 of 35\nPseudo Genes (frameshifted) :: 13 of 35\nPseudo Genes (incomplete) :: 31 of 35\nPseudo Genes (internal stop) :: 3 of 35\nPseudo Genes (multiple problems) :: 11 of 35\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019294854.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008209703.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_014889398.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889399.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294850.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889385.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889384.1
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019294517.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876594.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294519.1
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019294842.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876638.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294844.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019297004.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294883.1
COORDINATES: similar to AA sequence:RefSeq:WP_007426518.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294885.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400754.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007426510.1
COORDINATES: protein motif:HMM:NF036807.2
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: protein motif:HMM:NF022760.2
COORDINATES: similar to AA sequence:RefSeq:WP_014876630.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF015527.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_019294893.1
COORDINATES: protein motif:HMM:NF012573.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008887161.1
GO:0047343 - glucose-1-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012092816.1
COORDINATES: protein motif:HMM:NF020073.2
COORDINATES: similar to AA sequence:RefSeq:WP_008887306.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_008886572.1
COORDINATES: protein motif:HMM:NF026257.2
COORDINATES: protein motif:HMM:NF036826.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_012569142.1
COORDINATES: similar to AA sequence:RefSeq:WP_018971057.1
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_014075909.1
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: similar to AA sequence:RefSeq:WP_011453056.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]; GO:0008905 - mannose-phosphate guanylyltransferase activity [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_004300731.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209715.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294858.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175289.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_019294856.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294855.1