Leisingera caerulea strain S122 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
Submitted (10-AUG-2021) College of Marine Life Sciences, Ocean University of China, 5 Yushan Road, Qingdao, Shandong 266003, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP081073.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMART Link v. v5.0.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/13/2022 09:03:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,415\nCDSs (total) :: 4,342\nGenes (coding) :: 4,307\nCDSs (with protein) :: 4,307\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 35\nCDSs (without protein) :: 35\nPseudo Genes (ambiguous residues) :: 0 of 35\nPseudo Genes (frameshifted) :: 13 of 35\nPseudo Genes (incomplete) :: 31 of 35\nPseudo Genes (internal stop) :: 3 of 35\nPseudo Genes (multiple problems) :: 11 of 35\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008558538.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0043687 - post-translational protein modification [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
quinohemoprotein amine dehydrogenase maturation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013653225.1
quinohemoprotein amine dehydrogenase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_019297901.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030058 - amine dehydrogenase activity [Evidence IEA]
GO:0009310 - amine catabolic process [Evidence IEA]
quinohemoprotein amine dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008558520.1
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019297904.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019297905.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558581.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558555.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558597.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296511.1
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_019296510.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558542.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558616.1
COORDINATES: similar to AA sequence:RefSeq:WP_008203776.1
GO:0042400 - ectoine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558546.1
hydroxyectoine utilization dehydratase EutB
COORDINATES: similar to AA sequence:RefSeq:WP_008558588.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975302.1
DoeA (degradation of ectoine A) is also called EutD (ectoine utilization D).; DoeA (degradation of ectoine A) is also called EutD (ectoine utilization D); Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011046886.1
N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB
COORDINATES: similar to AA sequence:RefSeq:WP_008558587.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011046884.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019296500.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014881762.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241951.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558589.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229981.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558569.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008558535.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558566.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558522.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558598.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558576.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008558602.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558516.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008757155.1
COORDINATES: similar to AA sequence:RefSeq:WP_010438517.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296494.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_019296493.1
COORDINATES: similar to AA sequence:RefSeq:WP_013960107.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013960084.1
COORDINATES: protein motif:HMM:NF021466.2
COORDINATES: similar to AA sequence:RefSeq:WP_008558530.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558556.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558519.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558559.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558518.1
COORDINATES: similar to AA sequence:RefSeq:WP_012842196.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558573.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812062.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011536856.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297410.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558554.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296341.1
PLD nuclease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558558.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558564.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558549.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558521.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007255293.1
GO:0005515 - protein binding [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558531.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441407.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296515.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296516.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296517.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558523.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558595.1
COORDINATES: similar to AA sequence:RefSeq:WP_007856780.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558524.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572051.1
COORDINATES: similar to AA sequence:RefSeq:WP_008024023.1
COORDINATES: similar to AA sequence:RefSeq:WP_008215970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007875961.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558610.1
COORDINATES: similar to AA sequence:RefSeq:WP_005657735.1
GO:0018826 - methionine gamma-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558600.1
1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011539379.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558604.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297914.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558585.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558570.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297917.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019297918.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296466.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339645.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558517.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558560.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297897.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297898.1
quinohemoprotein amine dehydrogenase subunit alpha