Kingella oralis strain DSM 18271 plasmid pDSM18271, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella.
Genomic diversity of species in the Neisseriaceae family
Submitted (22-JUL-2020) Microbiology, INRS-Institut Armand-Frappier, 531 Bd des Prairies, Laval, Quebec H7V1B7, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP059568.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 155x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:50:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,639\nCDSs (total) :: 2,567\nGenes (coding) :: 2,539\nCDSs (with protein) :: 2,539\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 9 of 28\nPseudo Genes (incomplete) :: 16 of 28\nPseudo Genes (internal stop) :: 5 of 28\nPseudo Genes (multiple problems) :: 2 of 28\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009426180.1
GO:0046930 - pore complex [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
GO:0006811 - monoatomic ion transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_009310048.1
COORDINATES: similar to AA sequence:RefSeq:WP_003690223.1
COORDINATES: similar to AA sequence:RefSeq:WP_013448818.1
COORDINATES: similar to AA sequence:RefSeq:WP_008855174.1