Rhodovastum atsumiense strain G2-11 plasmid RHOApg.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Rhodovastum.
Submitted (07-APR-2022) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France, France
REFSEQ INFORMATION: The reference sequence is identical to\nOW485608.1.\nGenome annotation was performed using the MicroScope platform.\nAdditional annotation results about similarity searches,\ncomparative genomics and metabolic network predictions are\navailable on the platform web site\n(http://www.genoscope.cns.fr/agc/microscope).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/04/2023 04:19:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,736\nCDSs (total) :: 6,659\nGenes (coding) :: 6,536\nCDSs (with protein) :: 6,536\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 123\nCDSs (without protein) :: 123\nPseudo Genes (ambiguous residues) :: 0 of 123\nPseudo Genes (frameshifted) :: 31 of 123\nPseudo Genes (incomplete) :: 106 of 123\nPseudo Genes (internal stop) :: 9 of 123\nPseudo Genes (multiple problems) :: 23 of 123\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013844704.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014197208.1
COORDINATES: similar to AA sequence:RefSeq:WP_004146202.1
P22 phage major capsid protein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020472374.1
COORDINATES: similar to AA sequence:RefSeq:WP_020472375.1
COORDINATES: similar to AA sequence:RefSeq:WP_017401027.1
PBSX family phage terminase large subunit
COORDINATES: protein motif:HMM:NF024784.2
COORDINATES: protein motif:HMM:NF018785.2
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013215194.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842243.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166550.1
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000532177.1
COORDINATES: similar to AA sequence:RefSeq:WP_011383103.1
COORDINATES: similar to AA sequence:RefSeq:WP_018903185.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017274354.1
COORDINATES: similar to AA sequence:RefSeq:WP_009106270.1
COORDINATES: similar to AA sequence:RefSeq:WP_014238998.1
COORDINATES: similar to AA sequence:RefSeq:WP_016042342.1
COORDINATES: protein motif:HMM:NF017638.2
COORDINATES: protein motif:HMM:NF020715.2
COORDINATES: similar to AA sequence:RefSeq:WP_013640865.1
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: similar to AA sequence:RefSeq:WP_008494725.1
COORDINATES: similar to AA sequence:RefSeq:WP_007422926.1
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011002396.1
COORDINATES: similar to AA sequence:RefSeq:WP_007421565.1
COORDINATES: similar to AA sequence:RefSeq:WP_019717948.1
COORDINATES: similar to AA sequence:RefSeq:WP_008494732.1