Rhodovastum atsumiense strain G2-11 plasmid RHOApf.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Rhodovastum.
Submitted (07-APR-2022) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France, France
REFSEQ INFORMATION: The reference sequence is identical to\nOW485607.1.\nGenome annotation was performed using the MicroScope platform.\nAdditional annotation results about similarity searches,\ncomparative genomics and metabolic network predictions are\navailable on the platform web site\n(http://www.genoscope.cns.fr/agc/microscope).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/04/2023 04:19:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,736\nCDSs (total) :: 6,659\nGenes (coding) :: 6,536\nCDSs (with protein) :: 6,536\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 123\nCDSs (without protein) :: 123\nPseudo Genes (ambiguous residues) :: 0 of 123\nPseudo Genes (frameshifted) :: 31 of 123\nPseudo Genes (incomplete) :: 106 of 123\nPseudo Genes (internal stop) :: 9 of 123\nPseudo Genes (multiple problems) :: 23 of 123\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_013250822.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF026032.2
COORDINATES: protein motif:HMM:NF024668.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF015118.2
COORDINATES: protein motif:HMM:NF019608.2
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_007284440.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251563.1
COORDINATES: similar to AA sequence:RefSeq:WP_008813514.1
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020303743.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010974878.1
COORDINATES: protein motif:HMM:TIGR02612.1
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: similar to AA sequence:RefSeq:WP_012319572.1
COORDINATES: similar to AA sequence:RefSeq:WP_018323172.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020452.2
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_007043257.1
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006960008.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014778495.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984772.1
COORDINATES: similar to AA sequence:RefSeq:WP_019998883.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]