Rhodovastum atsumiense strain G2-11 plasmid RHOApe.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Rhodovastum.
Submitted (07-APR-2022) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France, France
REFSEQ INFORMATION: The reference sequence is identical to\nOW485606.1.\nGenome annotation was performed using the MicroScope platform.\nAdditional annotation results about similarity searches,\ncomparative genomics and metabolic network predictions are\navailable on the platform web site\n(http://www.genoscope.cns.fr/agc/microscope).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/04/2023 04:19:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,736\nCDSs (total) :: 6,659\nGenes (coding) :: 6,536\nCDSs (with protein) :: 6,536\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 123\nCDSs (without protein) :: 123\nPseudo Genes (ambiguous residues) :: 0 of 123\nPseudo Genes (frameshifted) :: 31 of 123\nPseudo Genes (incomplete) :: 106 of 123\nPseudo Genes (internal stop) :: 9 of 123\nPseudo Genes (multiple problems) :: 23 of 123\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF027401.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012675.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007422238.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564968.1
COORDINATES: protein motif:HMM:NF039181.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017673.2
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017130647.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: protein motif:HMM:NF016732.2
COORDINATES: similar to AA sequence:RefSeq:WP_011314830.1
COORDINATES: protein motif:HMM:NF041591.1
COORDINATES: protein motif:HMM:NF018630.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012925.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: similar to AA sequence:RefSeq:WP_014587731.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009382717.1
COORDINATES: similar to AA sequence:RefSeq:WP_002927191.1
COORDINATES: protein motif:HMM:NF024140.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011251563.1
COORDINATES: protein motif:HMM:TIGR00576.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023101.2
COORDINATES: similar to AA sequence:RefSeq:WP_018324577.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286803.1
COORDINATES: protein motif:HMM:NF040299.1
COORDINATES: protein motif:HMM:NF016845.2
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: similar to AA sequence:RefSeq:WP_019236441.1