Rhodovastum atsumiense strain G2-11 plasmid RHOApd.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Rhodovastum.
Submitted (07-APR-2022) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France, France
REFSEQ INFORMATION: The reference sequence is identical to\nOW485605.1.\nGenome annotation was performed using the MicroScope platform.\nAdditional annotation results about similarity searches,\ncomparative genomics and metabolic network predictions are\navailable on the platform web site\n(http://www.genoscope.cns.fr/agc/microscope).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/04/2023 04:19:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,736\nCDSs (total) :: 6,659\nGenes (coding) :: 6,536\nCDSs (with protein) :: 6,536\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 123\nCDSs (without protein) :: 123\nPseudo Genes (ambiguous residues) :: 0 of 123\nPseudo Genes (frameshifted) :: 31 of 123\nPseudo Genes (incomplete) :: 106 of 123\nPseudo Genes (internal stop) :: 9 of 123\nPseudo Genes (multiple problems) :: 23 of 123\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015992255.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001504954.1
COORDINATES: similar to AA sequence:RefSeq:WP_012751972.1
COORDINATES: similar to AA sequence:RefSeq:WP_007508465.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: similar to AA sequence:RefSeq:WP_007820278.1
COORDINATES: similar to AA sequence:RefSeq:WP_007820276.1
COORDINATES: similar to AA sequence:RefSeq:WP_019916264.1
COORDINATES: protein motif:HMM:NF025247.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008813343.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020750770.1
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013658.2
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF020715.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013654332.1
COORDINATES: similar to AA sequence:RefSeq:WP_018263993.1
COORDINATES: similar to AA sequence:RefSeq:WP_012972787.1
COORDINATES: similar to AA sequence:RefSeq:WP_003596563.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831243.1
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014044.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_011831646.1
COORDINATES: protein motif:HMM:NF012403.2
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006116750.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012973451.1
ABC transporter C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF016595.2
COORDINATES: similar to AA sequence:RefSeq:WP_007422926.1
COORDINATES: protein motif:HMM:NF016927.2
COORDINATES: similar to AA sequence:RefSeq:WP_008494729.1
COORDINATES: similar to AA sequence:RefSeq:WP_008494731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932632.1
COORDINATES: similar to AA sequence:RefSeq:WP_012335617.1
COORDINATES: protein motif:HMM:NF021494.2
COORDINATES: protein motif:HMM:TIGR01555.1
COORDINATES: protein motif:HMM:TIGR01547.1
PBSX family phage terminase large subunit
COORDINATES: protein motif:HMM:NF015550.2
COORDINATES: protein motif:HMM:NF013593.2
COORDINATES: similar to AA sequence:RefSeq:WP_016557380.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_012753537.1
COORDINATES: similar to AA sequence:RefSeq:WP_003602847.1
COORDINATES: similar to AA sequence:RefSeq:WP_006698145.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013798.2
COORDINATES: similar to AA sequence:RefSeq:WP_019091713.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_019561407.1
COORDINATES: protein motif:HMM:NF020811.2