Rhizobium sullae strain WSM1592 plasmid pWSM1592_2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Australian commercial rhizobial inoculants
Submitted (06-SEP-2022) Legume Rhizobium Sciences, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP104145.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.8.3-b1695\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 28x, 215x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/14/2022 19:21:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,512\nCDSs (total) :: 7,447\nGenes (coding) :: 6,992\nCDSs (with protein) :: 6,992\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 455\nCDSs (without protein) :: 455\nPseudo Genes (ambiguous residues) :: 0 of 455\nPseudo Genes (frameshifted) :: 239 of 455\nPseudo Genes (incomplete) :: 336 of 455\nPseudo Genes (internal stop) :: 33 of 455\nPseudo Genes (multiple problems) :: 138 of 455\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006699340.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020048164.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516709.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326374.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611391.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_003532617.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011654150.1
GO:0003824 - catalytic activity [Evidence IEA]
RiPP maturation radical SAM C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014529192.1
radical SAM family RiPP maturation amino acid epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_014529193.1
Nif11-like leader peptide family natural product precursor
COORDINATES: similar to AA sequence:RefSeq:WP_010914630.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020095073.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654154.1
poly(R)-hydroxyalkanoic acid synthase subunit PhaE
COORDINATES: similar to AA sequence:RefSeq:WP_011654155.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: similar to AA sequence:RefSeq:WP_018493656.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SDR family NAD-dependent epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_011654159.1
COORDINATES: protein motif:HMM:NF026948.2
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: similar to AA sequence:RefSeq:WP_016555313.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011654153.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654165.1
acyl CoA:acetate/3-ketoacid CoA transferase
COORDINATES: similar to AA sequence:RefSeq:WP_011654166.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654167.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654168.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010969783.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654174.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654175.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654176.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_012778801.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654178.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017968930.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968929.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020811856.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517310.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654184.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612363.1
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: similar to AA sequence:RefSeq:WP_009573734.1
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: similar to AA sequence:RefSeq:WP_018184275.1
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: similar to AA sequence:RefSeq:WP_014898983.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114695.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_007437196.1
COORDINATES: similar to AA sequence:RefSeq:WP_012346248.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004865321.1
COORDINATES: similar to AA sequence:RefSeq:WP_008493839.1
COORDINATES: similar to AA sequence:RefSeq:WP_014898980.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019957829.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187377.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606384.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497766.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516654.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654142.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011654141.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496482.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011654139.1
GO:0031460 - glycine betaine transport [Evidence IEA]
glycine betaine/L-proline ABC transporter ATP-binding protein ProV
COORDINATES: similar to AA sequence:RefSeq:WP_076611413.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018480553.1
COORDINATES: similar to AA sequence:RefSeq:WP_010127379.1
COORDINATES: similar to AA sequence:RefSeq:WP_004174297.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489155.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488589.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_011654624.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650495.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048036.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484677.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551131.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957069.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517659.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239024.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611561.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857740.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048109.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003504852.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528312.1
COORDINATES: similar to AA sequence:RefSeq:WP_018481833.1
COORDINATES: similar to AA sequence:RefSeq:WP_046205714.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996643.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672095.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490144.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493467.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480491.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018444559.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068288.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490138.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967405.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857586.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011650575.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_018328351.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327668.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899356.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330258.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875060.1
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: protein motif:HMM:NF014430.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913949.1
COORDINATES: similar to AA sequence:RefSeq:WP_003581563.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018115124.1
COORDINATES: protein motif:HMM:NF025674.2
COORDINATES: similar to AA sequence:RefSeq:WP_018115126.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200234.1
COORDINATES: protein motif:HMM:NF025120.2
COORDINATES: similar to AA sequence:RefSeq:WP_007799835.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014330931.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015338603.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017266451.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010875141.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018516918.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538573.1
COORDINATES: similar to AA sequence:RefSeq:WP_007627851.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210682.1
substrate binding domain-containing protein
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_018497206.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126022.1
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536544.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053432.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_009489223.1
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532765.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488306.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016558440.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006205096.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_007539072.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - cellular amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004678546.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_009495344.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857649.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331162.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_018445488.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558434.1
COORDINATES: similar to AA sequence:RefSeq:WP_004109730.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015338933.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006939180.1
COORDINATES: similar to AA sequence:RefSeq:WP_003563304.1
COORDINATES: similar to AA sequence:RefSeq:WP_008839644.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452621.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010911152.1
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: protein motif:HMM:NF015995.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967447.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328886.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996987.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967455.1
catalyzes the transfer of a fatty acyl group onto Nod factor, beta-(1,4)-N-acetylglucosamine oligosaccharide; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010967456.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875355.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967021.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
IS6-like element ISRH1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013533539.1
COORDINATES: similar to AA sequence:RefSeq:WP_006935312.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199609.1
COORDINATES: similar to AA sequence:RefSeq:WP_018268884.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532819.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967448.1
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006216615.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_015887285.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_017275910.1
bifunctional sulfate adenylyltransferase/adenylyl-sulfate kinase NodQ
COORDINATES: similar to AA sequence:RefSeq:WP_014527278.1
3'(2'),5'-bisphosphate nucleotidase CysQ
GO:0016410 - N-acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014528527.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010974920.1
The ATPase VirD4 is a core component of the VirB/VirD4 form of type IV secretion systems (T4SS), also known as type IVa secretion systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF010411.0
two-component system VirA-like sensor kinase
COORDINATES: similar to AA sequence:RefSeq:WP_076611126.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654537.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188732.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558278.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531097.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612018.1
COORDINATES: similar to AA sequence:RefSeq:WP_014327616.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917843.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007538468.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537101.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018009786.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537095.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_019856525.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970875.1
type IV secretion system lipoprotein VirB7
COORDINATES: similar to AA sequence:RefSeq:WP_003537089.1
COORDINATES: similar to AA sequence:RefSeq:WP_006329143.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974916.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_019856520.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528518.1
COORDINATES: similar to AA sequence:RefSeq:WP_003581543.1
type IV secretion system lytic transglycosylase VirB1
COORDINATES: similar to AA sequence:RefSeq:WP_076611554.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128939.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016736190.1
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_003589503.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654198.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611390.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532845.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479295.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_008840730.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989982.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967394.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970918.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247185.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_010913611.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_009762335.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_013845750.1
GO:0051540 - metal cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875127.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011970913.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762331.1
COORDINATES: protein motif:HMM:NF039815.1
COORDINATES: similar to AA sequence:RefSeq:WP_008965814.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_011995892.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009176842.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004128995.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018860145.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860143.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_018860142.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860141.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860140.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860139.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860138.1
COORDINATES: protein motif:HMM:NF012385.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF013179.2
COORDINATES: protein motif:HMM:NF012321.2
nitric oxide reductase activation protein NorD
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_018444364.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004921639.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605856.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015926975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007672802.1
COORDINATES: similar to AA sequence:RefSeq:WP_015667763.1
COORDINATES: similar to AA sequence:RefSeq:WP_018421002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006611166.1
COORDINATES: similar to AA sequence:RefSeq:WP_018632781.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011085804.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000907792.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008840700.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006201702.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484466.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245353.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245354.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245355.1
GO:0018822 - nitrile hydratase activity [Evidence IEA]
GO:0050898 - nitrile metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484462.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548585.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996633.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654875.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654874.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483042.1
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003577526.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577524.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007634835.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997672.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555452.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012652754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449172.1
COORDINATES: similar to AA sequence:RefSeq:WP_002967296.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493990.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538619.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958363.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997028.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496052.1
COORDINATES: similar to AA sequence:RefSeq:WP_006271643.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653760.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691749.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_012653763.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965882.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965883.1
COORDINATES: similar to AA sequence:RefSeq:WP_018749813.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039223.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204618.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516649.1
COORDINATES: similar to AA sequence:RefSeq:WP_003493925.1
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_018516641.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991655.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516639.1
COORDINATES: similar to AA sequence:RefSeq:WP_018700855.1
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_015665340.1
COORDINATES: similar to AA sequence:RefSeq:WP_007774630.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019653538.1
COORDINATES: protein motif:HMM:NF024772.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611389.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482431.1
COORDINATES: protein motif:HMM:NF037152.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018245905.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313421.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047212.1
COORDINATES: similar to AA sequence:RefSeq:WP_017988813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006327819.1
COORDINATES: similar to AA sequence:RefSeq:WP_007198396.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF012312.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024966.2
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: protein motif:HMM:NF013044.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037008.2
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_010356443.1
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF019640.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003539817.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: similar to AA sequence:RefSeq:WP_006615665.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460652.1
COORDINATES: similar to AA sequence:RefSeq:WP_019014109.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315994.1
COORDINATES: similar to AA sequence:RefSeq:WP_011924467.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_018068012.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098168.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967898.1
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011774681.1
COORDINATES: similar to AA sequence:RefSeq:WP_017801974.1
COORDINATES: similar to AA sequence:RefSeq:WP_020808399.1
COORDINATES: protein motif:HMM:TIGR04380.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019565831.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019964286.1
COORDINATES: similar to AA sequence:RefSeq:WP_008972689.1
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_013743259.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403258.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696035.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887351.1
COORDINATES: similar to AA sequence:RefSeq:WP_018348705.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651547.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651546.1
COORDINATES: similar to AA sequence:RefSeq:WP_016556088.1
COORDINATES: similar to AA sequence:RefSeq:WP_016556087.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053360.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820057.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517297.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_008997084.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125765.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017275678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018482051.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677266.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013760951.1
COORDINATES: protein motif:HMM:NF025126.2
COORDINATES: protein motif:HMM:NF017416.2
glyoxalase/bleomycin resistance/dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016850415.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887766.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887767.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010659663.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013636036.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449561.1
COORDINATES: similar to AA sequence:RefSeq:WP_003513710.1
COORDINATES: similar to AA sequence:RefSeq:WP_003215155.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018482044.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_020397338.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_011654562.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_018516731.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020048129.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654566.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245318.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444521.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237999.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097600.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482034.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097602.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018516723.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_020048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048155.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_018482027.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015341955.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427463.1
GO:0016740 - transferase activity [Evidence IEA]