Aurantiacibacter gangjinensis strain JCM 15420 chromosome II, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Aurantiacibacter.
Complete genome sequence of two-chromosomal Erythrobacter gangjinensis CGMCC 1.15024T, isolated from seawater
Submitted (18-NOV-2016) Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, 36th Baochu Bei Road, Hangzhou, Zhejiang 310012, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP018098.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS:3.0-Data-START##\nItems :: Description\nGram stain :: Negative\nCell shape :: Rod\nMotility :: Non-motile\nColour of colonies :: Orange\nTemperature :: 15 to 37 degC\nSea salt concentration :: 1 to 7%\npH range :: 6.0 to 10.0\ninvestigation_type :: bacteria_archaea\nproject_name :: Genome sequence of Erythrobacter\n gangjinensis\nlat_lon :: 34deg27\" N, 126deg47\" E\ndepth :: Not reported\ngeo_loc_name :: Gangjin Bay, Korea\ncollection_date :: Not reported\nbiome :: Bay, [ENVO:00000032]\nfeature :: Aquacultural site, [ENVO:00000294]\nmaterial :: Water, [ENVO:00002006]\nenv_package :: Sea water, [ENVO:00002149]\nnum_replicons :: 2\nEstimated_size :: 2,724,951\nSource_mat_id :: CGMCC 1.15024T = K7-2T = JCM 15420T =\n KCTC 22330T\nref_biomaterial :: PMID: 19671726\nTrophic_level :: Chemoorganotroph\nRel_to_oxygen :: Aerobic\nisol_growth_condt :: PMID: 19671726\nLib_reads_seqd :: 7,125,774\nseq_meth :: ABI 3130XL, Illumina HiSeq 2000\nAssembly method :: ABySS 1.9.0\nassembly :: Egan_v1.0\nGenome coverage :: 327x\nfinishing_strategy :: Prime design, PCR and Sanger sequencing\n##MIGS:3.0-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. 1.9.0\nGenome Coverage :: 327x\nSequencing Technology :: Illumina HiSeq 2000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 01:41:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,703\nCDSs (total) :: 2,653\nGenes (coding) :: 2,646\nCDSs (with protein) :: 2,646\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 7\nCDSs (without protein) :: 7\nPseudo Genes (ambiguous residues) :: 0 of 7\nPseudo Genes (frameshifted) :: 0 of 7\nPseudo Genes (incomplete) :: 6 of 7\nPseudo Genes (internal stop) :: 1 of 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Erythrobacter gangjinensis
COORDINATES: similar to AA sequence:RefSeq:WP_008829124.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: similar to AA sequence:RefSeq:WP_011446975.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011415030.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
COORDINATES: similar to AA sequence:RefSeq:WP_008833127.1
COORDINATES: similar to AA sequence:RefSeq:WP_006832523.1
GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006832521.1
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_007165341.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: similar to AA sequence:RefSeq:WP_006832517.1
COORDINATES: protein motif:HMM:NF017470.2
COORDINATES: similar to AA sequence:RefSeq:WP_013834265.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006833091.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: similar to AA sequence:RefSeq:WP_006833092.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051262 - protein tetramerization [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007165335.1
Tim44/TimA family putative adaptor protein
COORDINATES: similar to AA sequence:RefSeq:WP_017665462.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013834261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007165332.1
COORDINATES: similar to AA sequence:RefSeq:WP_006832508.1
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF038065.1
COORDINATES: similar to AA sequence:RefSeq:WP_010235857.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010235852.1
GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]
GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017184095.1
GO:0102039 - NADH-dependent peroxiredoxin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009822868.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011415007.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_011444473.1
COORDINATES: similar to AA sequence:RefSeq:WP_008827990.1
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007012914.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011414998.1
COORDINATES: similar to AA sequence:RefSeq:WP_007165308.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011414996.1
murein L,D-transpeptidase catalytic domain family protein
COORDINATES: protein motif:HMM:TIGR02281.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TIGR02281 family clan AA aspartic protease
COORDINATES: similar to AA sequence:RefSeq:WP_007165305.1
COORDINATES: similar to AA sequence:RefSeq:WP_017664590.1
COORDINATES: similar to AA sequence:RefSeq:WP_006833116.1
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_007687564.1
COORDINATES: similar to AA sequence:RefSeq:WP_007403500.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_010235798.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011414983.1
COORDINATES: similar to AA sequence:RefSeq:WP_011414982.1
COORDINATES: similar to AA sequence:RefSeq:WP_007165285.1
COORDINATES: similar to AA sequence:RefSeq:WP_008069523.1
COORDINATES: similar to AA sequence:RefSeq:WP_017664604.1
COORDINATES: similar to AA sequence:RefSeq:WP_013831792.1
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010415399.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688064.1
COORDINATES: similar to AA sequence:RefSeq:WP_011414974.1
COORDINATES: similar to AA sequence:RefSeq:WP_010235266.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010414743.1
GO:0009058 - biosynthetic process [Evidence IEA]
TIGR04282 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010235261.1
COORDINATES: similar to AA sequence:RefSeq:WP_010414740.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413041.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011413040.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011413039.1
COORDINATES: protein motif:HMM:NF021438.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF039792.1
COORDINATES: similar to AA sequence:RefSeq:WP_011313484.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01550.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: protein motif:HMM:NF014626.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_011415156.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003047539.1
GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
adenosylmethionine--8-amino-7-oxononanoate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_007687272.1
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008831119.1
COORDINATES: similar to AA sequence:RefSeq:WP_011444380.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163779.1
COORDINATES: similar to AA sequence:RefSeq:WP_007163882.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008603776.1
COORDINATES: similar to AA sequence:RefSeq:WP_017664609.1
COORDINATES: similar to AA sequence:RefSeq:WP_011444141.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011444143.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163502.1
COORDINATES: similar to AA sequence:RefSeq:WP_006833995.1
COORDINATES: similar to AA sequence:RefSeq:WP_017664617.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011444148.1
COORDINATES: similar to AA sequence:RefSeq:WP_011444149.1
COORDINATES: protein motif:HMM:NF024921.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008603541.1
GO:0015098 - molybdate ion transmembrane transporter activity [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007685223.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF018894.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010545430.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010235725.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
class I poly(R)-hydroxyalkanoic acid synthase
COORDINATES: protein motif:HMM:NF020918.2
COORDINATES: similar to AA sequence:RefSeq:WP_008832765.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832764.1
COORDINATES: similar to AA sequence:RefSeq:WP_007013376.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter permease LptG
COORDINATES: similar to AA sequence:RefSeq:WP_011414960.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013847465.1
COORDINATES: similar to AA sequence:RefSeq:WP_010415362.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832266.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413045.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007166304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006834483.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007712897.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008069277.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683930.1
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010546228.1
COORDINATES: similar to AA sequence:RefSeq:WP_010414780.1
COORDINATES: similar to AA sequence:RefSeq:WP_010235301.1
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_010235302.1
GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF026799.2
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA]
Brp/Blh family beta-carotene 15,15'-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_010414789.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006834497.1
COORDINATES: similar to AA sequence:RefSeq:WP_007163144.1
COORDINATES: similar to AA sequence:RefSeq:WP_010235306.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831737.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163147.1
COORDINATES: similar to AA sequence:RefSeq:WP_011443745.1
COORDINATES: similar to AA sequence:RefSeq:WP_006953606.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413070.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:NF024855.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010414820.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011413074.1
COORDINATES: similar to AA sequence:RefSeq:WP_006832645.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013040374.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_010234999.1
COORDINATES: similar to AA sequence:RefSeq:WP_007012115.1
GO:0004456 - phosphogluconate dehydratase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015460014.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163160.1
COORDINATES: similar to AA sequence:RefSeq:WP_008070651.1
GO:0003824 - catalytic activity [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: similar to AA sequence:RefSeq:WP_010235222.1
COORDINATES: similar to AA sequence:RefSeq:WP_006832483.1
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011444505.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: similar to AA sequence:RefSeq:WP_003047390.1
COORDINATES: similar to AA sequence:RefSeq:WP_017663879.1
GO:0008252 - nucleotidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010183974.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011415121.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011415122.1
COORDINATES: similar to AA sequence:RefSeq:WP_017665989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006833903.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017665987.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: protein motif:HMM:NF024934.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: similar to AA sequence:RefSeq:WP_006831789.1
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_006831786.1
COORDINATES: similar to AA sequence:RefSeq:WP_006831785.1
COORDINATES: protein motif:HMM:NF016972.2
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017668175.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF016296.2
COORDINATES: protein motif:HMM:NF020468.2
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: protein motif:HMM:TIGR00785.1
GO:0008509 - monoatomic anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - monoatomic anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: similar to AA sequence:RefSeq:WP_013833352.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: similar to AA sequence:RefSeq:WP_006833305.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007165203.1
GO:0008442 - 3-hydroxyisobutyrate dehydrogenase activity [Evidence IEA]
GO:0006574 - valine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003046570.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007165202.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831256.1
COORDINATES: similar to AA sequence:RefSeq:WP_010234787.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_017664506.1
COORDINATES: similar to AA sequence:RefSeq:WP_007165395.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010410105.1
COORDINATES: similar to AA sequence:RefSeq:WP_011415114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011415115.1
COORDINATES: similar to AA sequence:RefSeq:WP_004208279.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:NF024491.2
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007165390.1
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006833915.1
COORDINATES: similar to AA sequence:RefSeq:WP_011443807.1
COORDINATES: similar to AA sequence:RefSeq:WP_006833920.1
COORDINATES: similar to AA sequence:RefSeq:WP_011415102.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996108.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012177066.1
COORDINATES: similar to AA sequence:RefSeq:WP_017668773.1
COORDINATES: similar to AA sequence:RefSeq:WP_006833924.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404819.1
COORDINATES: similar to AA sequence:RefSeq:WP_010235940.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_011415049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012049799.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017665499.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011444238.1
membrane protein insertion efficiency factor YidD
COORDINATES: similar to AA sequence:RefSeq:WP_011444239.1
GO:0032977 - membrane insertase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007012263.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: protein motif:HMM:NF017076.2
COORDINATES: similar to AA sequence:RefSeq:WP_007012259.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008993126.1
GO:0009014 - succinyl-diaminopimelate desuccinylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007165359.1
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007165357.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003050702.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846975.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_006833945.1
COORDINATES: similar to AA sequence:RefSeq:WP_007165349.1