Thermococcus profundus strain DT 5432 plasmid unnamed, complete sequence.
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.
Complete genome sequence of Thermococcus profundus strain DT5432
Submitted (21-MAR-2016) Laboratoire MAP UMR 5240, Institut National des Sciences Appliquees de Lyon, Batiment Pasteur, 11 avenue Jean Capelle, Villeurbanne, Rhone 69621, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP014863.1.\nSource DNA available from the Oger lab UMR5240, Institut National\ndes Sciences Appliquees, Batiment Pasteur, 11 Avenue Jean Capelle,\n69621 Villeurbanne (France).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: velvet v. 1.2.10; Newbler v. 2.8\nGenome Coverage :: 200\nSequencing Technology :: 454; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:12:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,172\nCDSs (total) :: 2,120\nGenes (coding) :: 2,111\nCDSs (with protein) :: 2,111\nGenes (RNA) :: 52\nrRNAs :: 2, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 8 of 9\nPseudo Genes (incomplete) :: 1 of 9\nPseudo Genes (internal stop) :: 0 of 9\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024642.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019291.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014788907.1
COORDINATES: similar to AA sequence:RefSeq:WP_014788908.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014788909.1
COORDINATES: similar to AA sequence:RefSeq:WP_014788910.1
COORDINATES: protein motif:HMM:NF012908.2
COORDINATES: similar to AA sequence:RefSeq:WP_013748664.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012572831.1
COORDINATES: similar to AA sequence:RefSeq:WP_013747412.1