Thermus aquaticus Y51MC23 plasmid pTA69, complete sequence.
Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus.
Complete Genome Sequence of Thermus aquaticus Y51MC23
Submitted (20-APR-2015) Research and Development, Lucigen Corp., 2905 Parmenter Street, Middleton, WI 53562, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP010825.1.\nAnnotation provided by the submitter based on the NCBI Prokaryotic\nGenome Annotation Pipeline (released 2013). Information about the\nPipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nBacteria available from David Mead (dmead@Lucigen.com).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Workbench de novo assembly v.\n 7.0\nAssembly Name :: Taq\nGenome Coverage :: 60X\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:24:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,553\nCDSs (total) :: 2,490\nGenes (coding) :: 2,440\nCDSs (with protein) :: 2,440\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 5\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 22 of 50\nPseudo Genes (incomplete) :: 39 of 50\nPseudo Genes (internal stop) :: 8 of 50\nPseudo Genes (multiple problems) :: 16 of 50\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014511018.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014511019.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511021.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511022.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014632343.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511024.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511025.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632341.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511027.1
S-layer homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015586357.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511029.1
COORDINATES: similar to AA sequence:RefSeq:WP_015717511.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014632336.1
COORDINATES: protein motif:HMM:NF022932.2
COORDINATES: similar to AA sequence:RefSeq:WP_014632334.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014511035.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511036.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511037.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511038.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511041.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048740.1
IS607 family element RNA-guided endonuclease TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_014511044.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511045.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511047.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632322.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632321.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015065452.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003048839.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048837.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065449.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048834.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065447.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019551579.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019551580.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048933.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015065493.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015717526.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632262.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632261.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065487.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511354.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065484.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065480.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632241.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065478.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065477.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065476.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048918.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_015065466.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632223.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632222.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632221.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511375.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014632219.1
COORDINATES: similar to AA sequence:RefSeq:WP_003049330.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632217.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065465.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065464.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632214.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065456.1
COORDINATES: protein motif:HMM:NF020530.2
COORDINATES: similar to AA sequence:RefSeq:WP_014632205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632204.1
COORDINATES: similar to AA sequence:RefSeq:WP_015065453.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511015.1
COORDINATES: similar to AA sequence:RefSeq:WP_014632200.1