Thermus aquaticus Y51MC23 plasmid pTA16, complete sequence.
type: Entry
definition: Thermus aquaticus Y51MC23 plasmid pTA16, complete sequence.
sequence version: NZ_CP010824.1
sequence date: 2022-12-23
sequence: sequence
division: CON
label: NZ_CP010824.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02441811
keyword: RefSeq
source: Thermus aquaticus Y51MC23
organism: Thermus aquaticus Y51MC23
taxonomy: Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP010824.1.\nAnnotation provided by the submitter based on the NCBI Prokaryotic\nGenome Annotation Pipeline (released 2013). Information about the\nPipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nBacteria available from David Mead (dmead@Lucigen.com).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Workbench de novo assembly v.\n 7.0\nAssembly Name :: Taq\nGenome Coverage :: 60X\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:24:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,553\nCDSs (total) :: 2,490\nGenes (coding) :: 2,440\nCDSs (with protein) :: 2,440\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 5\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 22 of 50\nPseudo Genes (incomplete) :: 39 of 50\nPseudo Genes (internal stop) :: 8 of 50\nPseudo Genes (multiple problems) :: 16 of 50\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16597
topology: circular
so has quality: SO_0000988
location: 1..16597
location: region:1-16597:1
RO_0002162: 498848

NZ_CP010824
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02441811
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Thermus aquaticus Y51MC23
author: Brumm, P.
author: Monsma, S.
author: Mead, D.A.
author: Keough, B.
author: Jasinovica, S.
author: Ferguson, E.
author: Schoenfeld, T.
author: Lodes, M.
journal: Unpublished

2
title: Direct Submission
author: Brumm, P.
author: Monsma, S.
author: Mead, D.A.
author: Keough, B.
author: Jasinovica, S.
author: Ferguson, E.
author: Schoenfeld, T.
author: Lodes, M.
journal: Submitted (20-APR-2015) Research and Development, Lucigen Corp., 2905 Parmenter Street, Middleton, WI 53562, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16597:1
position: 16597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16597:1:source
so part of: sequence
organism: Thermus aquaticus Y51MC23
mol type: genomic DNA
strain: Y51MC23
plasmid: pTA16

498848
type: Taxonomy
SIO_000068: taxonomy

TO73_RS11600
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11600
so part of: sequence
location: complement(join(16502..16597,1..357))
location: region:1-16597:-1
so has part: feature:1-357:-1:exon
so has part: feature:16502-16597:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16597:-1
position: 16597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-357:-1:exon

position:357:-1
position: 357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16502-16597:-1:exon

position:16502:-1
position: 16502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TO73_RS11600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049650.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDPTLYAPWQAARILGVSPATLRRMAALVEEVLHPLPRDAGGGRLWPEGVLGLLAEARGRAKAEGIPLREALLQVKEASGAEGAFPPPPPLATQASGEEALALLRALLERLERVEGELAALRAENQALRESLKALEAPRPRRPWWAFWRR
SIO_010081: TO73_RS11600
subclass of: SO_0000673
so part of: TO73_RS11600
location: complement(join(16502..16597,1..357))
location: region:1-16597:-1
so has part: feature:1-357:-1:exon
so has part: feature:16502-16597:-1:exon

WP_003049650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-357:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16502-16597:-1:exon

TO73_RS11605
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11605
old locus tag: TO73_2501
so part of: sequence
location: 672..884
location: region:672-884:1
so has part: feature:672-884:1:exon
subclass of: SO_0000010

position:672:1
position: 672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:884:1
position: 884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672-884:1:exon

TO73_RS11605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11605
old locus tag: TO73_2501
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049652.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRNLERDTVELLLETPELPPERREALARELEAVVARHLPGRPVRLLSGVDERGRRWLRLVVPLGPAGRG
SIO_010081: TO73_RS11605
subclass of: SO_0000673
so part of: TO73_RS11605
location: 672..884
location: region:672-884:1
so has part: feature:672-884:1:exon

WP_231623782.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:672-884:1:exon

TO73_RS11610
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11610
old locus tag: TO73_2502
so part of: sequence
location: 933..1169
location: region:933-1169:1
so has part: feature:933-1169:1:exon
subclass of: SO_0000010

position:933:1
position: 933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1169:1
position: 1169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:933-1169:1:exon

TO73_RS11610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11610
old locus tag: TO73_2502
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049653.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF433 domain-containing protein
translation: MDQGDLLARISVDPEVNHGQPTVRGLRYPVKVLLELLASGMTPEEILADYPDLESEDLQAVLLYAARLAEVKTVLRVA
SIO_010081: TO73_RS11610
subclass of: SO_0000673
so part of: TO73_RS11610
location: 933..1169
location: region:933-1169:1
so has part: feature:933-1169:1:exon

WP_003049653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:933-1169:1:exon

TO73_RS11615
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11615
old locus tag: TO73_2503
so part of: sequence
location: 1166..1528
location: region:1166-1528:1
so has part: feature:1166-1528:1:exon
subclass of: SO_0000010

position:1166:1
position: 1166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1528:1
position: 1528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1166-1528:1:exon

TO73_RS11615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11615
old locus tag: TO73_2503
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049655.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5615 family PIN-like protein
translation: MSEPLFLVDAHLPFRLVERLRERGYDALHTRELPRGNATPDQEICALSLRERRVVVTKDGDFVQDLLLRKEPYKLLLISTGNIRNRDLEELFLRNLPTLASLLKDHTFVELGRDFITVHF
SIO_010081: TO73_RS11615
subclass of: SO_0000673
so part of: TO73_RS11615
location: 1166..1528
location: region:1166-1528:1
so has part: feature:1166-1528:1:exon

WP_003049655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1166-1528:1:exon

TO73_RS11620
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11620
old locus tag: TO73_2504
so part of: sequence
location: complement(1711..2436)
location: region:1711-2436:-1
so has part: feature:1711-2436:-1:exon
subclass of: SO_0000010

position:1711:-1
position: 1711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2436:-1
position: 2436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1711-2436:-1:exon

TO73_RS11620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11620
old locus tag: TO73_2504
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049657.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTLLLLAFLLLPAWGQIDPLRPAEEPTLGFRVGLGYGPFGGRGIGVDEGGPYAFTRAGHDLRLEVGLSWRATQEVSLEGAVGLSLLLLGEERVREGRREASWWGEGGWGLQVGAAYRLRELPGRPRVYLGARYPWGLEGGVSLAFLRDPVVATLGGSLDWSPGEPPVLGVGLGLGLVANEVWSLGVGASLRVPLGVEPPGGALFLRAGYSLDPEGKGEVAVRGSLGDGGFRLRVEWAGGL
SIO_010081: TO73_RS11620
subclass of: SO_0000673
so part of: TO73_RS11620
location: complement(1711..2436)
location: region:1711-2436:-1
so has part: feature:1711-2436:-1:exon

WP_003049657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1711-2436:-1:exon

TO73_RS11625
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11625
old locus tag: TO73_2505
so part of: sequence
location: complement(2433..3044)
location: region:2433-3044:-1
so has part: feature:2433-3044:-1:exon
subclass of: SO_0000010

position:2433:-1
position: 2433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3044:-1
position: 3044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2433-3044:-1:exon

TO73_RS11625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11625
old locus tag: TO73_2505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049659.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine peptidase family C39 domain-containing protein
translation: MARPILARILALFAVSWALAYSKSLSELRYTATVPQTTWETCGAAALATLHRLLGLEATEGEMLERALRHQEGLKGGLNALSLVRASGERGLPLRGYRMDSEALRAYFARGGLPVILHVTRPELHWVVGVALVGEHLVLADPSWGRRILPLPALAGEKGWSGVTLVPEPPLLLVPRGRAAQGEWAAWAQARLRRLEALGGRLP
SIO_010081: TO73_RS11625
subclass of: SO_0000673
so part of: TO73_RS11625
location: complement(2433..3044)
location: region:2433-3044:-1
so has part: feature:2433-3044:-1:exon

WP_003049659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2433-3044:-1:exon

TO73_RS11630
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11630
so part of: sequence
location: complement(3101..3766)
location: region:3101-3766:-1
so has part: feature:3101-3766:-1:exon
subclass of: SO_0000010

position:3101:-1
position: 3101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3766:-1
position: 3766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3101-3766:-1:exon

TO73_RS11630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11630
EC number: 3.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049660.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO process: GO:0071586 - CAAX-box protein processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CPBP family glutamic-type intramembrane protease
translation: MQVKAKVGGALVAPLIFLFLGPLFSFFAFLLHPLDSFLIDTGLWLIVAFSGLFYLKYRARLTFIEAEKGFFTRGLLFSPVFRLAVILLFGHLLFVFLLALKLPYWPPSRFWYVLDSGEHLSLFITLFFWLSRAYIEELLFRYVPYQLAGSKGLLFSGVSFVFVHLVNPWTGVQLEPELILLYTVITLFLIGSFLFLRSLSMTSLVHALINMGFFPISLNYT
SIO_010081: TO73_RS11630
subclass of: SO_0000673
so part of: TO73_RS11630
location: complement(3101..3766)
location: region:3101-3766:-1
so has part: feature:3101-3766:-1:exon

WP_003049660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3101-3766:-1:exon

TO73_RS11635
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11635
old locus tag: TO73_2506
so part of: sequence
location: complement(4145..5269)
location: region:4145-5269:-1
so has part: feature:4145-5269:-1:exon
subclass of: SO_0000010

position:4145:-1
position: 4145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5269:-1
position: 5269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4145-5269:-1:exon

TO73_RS11635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11635
old locus tag: TO73_2506
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008630830.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MRGALAAGSARVSEMVASLPSPLQNRFHQAKALYRFLSNPRVEAEALLDRVYQESATALEGEEVLVLLDLSPVAKPYARALEGIARVGKDRRPGYELLTALGLDPAGRLALGYAHLVAYGERGFASLPKEVEGAIEAARERLGGVGRRLVYVADRGFDDRKVFGQVLALGEEFVVRVYRDRKLGEGGSLAKVASSLALPCGEEVELRVGGRYQRVRLHFGWREVEVEGRRLHLVVCRVPALGRRGEWWLLTSLPVRGREEAAQVVEAYRRRWEVERFFRLLKTGLGLETFQVRGLARIRKVVAVLLGLAVFLWEVERLGDPFKGFLLQLGGKLGLPSERDGPYLLLRGLVRLLNYEVTQELLKQAKGGRGRSFG
SIO_010081: TO73_RS11635
subclass of: SO_0000673
so part of: TO73_RS11635
location: complement(4145..5269)
location: region:4145-5269:-1
so has part: feature:4145-5269:-1:exon

WP_008632315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4145-5269:-1:exon

TO73_RS13600
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13600
old locus tag: TO73_2507
so part of: sequence
location: 5527..5787
location: region:5527-5787:1
so has part: feature:5527-5787:1:exon
subclass of: SO_0000010

position:5527:1
position: 5527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5787:1
position: 5787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5527-5787:1:exon

TO73_RS13600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13600
old locus tag: TO73_2507
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPQDREHPLYHLDAETLIVATYIWVDDELKALVAQGFKLPKKQKHQKATLAELLALAIFLLRKMFPYGEAARARTSPKATSRPRLP
SIO_010081: TO73_RS13600
subclass of: SO_0000673
so part of: TO73_RS13600
location: 5527..5787
location: region:5527-5787:1
so has part: feature:5527-5787:1:exon

WP_003049662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5527-5787:1:exon

TO73_RS13605
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13605
old locus tag: TO73_2508
so part of: sequence
location: 5904..6152
location: region:5904-6152:1
so has part: feature:5904-6152:1:exon
subclass of: SO_0000010

position:5904:1
position: 5904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6152:1
position: 6152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5904-6152:1:exon

TO73_RS13605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13605
old locus tag: TO73_2508
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: transposase
translation: MVDLKPIPLAHGHRIHGLSLPEAAVGVGPLGAFGGYVLVPVMNERGLFFRWTLLPGNARETWAGELLEGLPAVLGDRGYKIR
SIO_010081: TO73_RS13605
subclass of: SO_0000673
so part of: TO73_RS13605
location: 5904..6152
location: region:5904-6152:1
so has part: feature:5904-6152:1:exon

WP_003049664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5904-6152:1:exon

TO73_RS13610
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13610
old locus tag: TO73_2509
so part of: sequence
location: 6156..6419
location: region:6156-6419:1
so has part: feature:6156-6419:1:exon
subclass of: SO_0000010

position:6156:1
position: 6156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6419:1
position: 6419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6156-6419:1:exon

TO73_RS13610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13610
old locus tag: TO73_2509
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRWVQGVKTPSYRLRGGKVVETGWREWMGRVRNWIETRFSVMVRSLGLHRIEVRSYWGLVARVNLILLVHNLIRSRVLLKMARGEL
SIO_010081: TO73_RS13610
subclass of: SO_0000673
so part of: TO73_RS13610
location: 6156..6419
location: region:6156-6419:1
so has part: feature:6156-6419:1:exon

WP_224065539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6156-6419:1:exon

TO73_RS11645
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11645
old locus tag: TO73_2510
so part of: sequence
location: complement(6414..7478)
location: region:6414-7478:-1
so has part: feature:6414-7478:-1:exon
subclass of: SO_0000010

position:6414:-1
position: 6414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7478:-1
position: 7478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6414-7478:-1:exon

TO73_RS11645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11645
old locus tag: TO73_2510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013157653.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integrase core domain-containing protein
translation: MQLTTVGKAIWRGARKAQELEMAGAGDPLVQERLRKLKQVEAFRKHGVSWPEIQELLGISRATYYRWRKRLKEEGLAGLKPRSRRPQRLRRRIYWSSDLLIRVEALRKENPTWGRWPIWLTLRKEGFAVSERTVGRILAHLEARGRVERVAAFLARARRGKGRPRPQRPYAQRKPRGYEARAPGDLVQLDTLTVTLGPGEVVKHFSALDLVTRFSLAQVHTRATANLAAGFLSALVTKAPFPIRAVQVDGGSEFMAEFEEACRSLGIRLFVLPPRSPKLNGHVERMQRTFRDEFYTLPLPRGLVRLQAELDAYLAYYNHRRPHMALGGLAPLEFLAKMQAESVPQSQMPSCATS
SIO_010081: TO73_RS11645
subclass of: SO_0000673
so part of: TO73_RS11645
location: complement(6414..7478)
location: region:6414-7478:-1
so has part: feature:6414-7478:-1:exon

WP_015065469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6414-7478:-1:exon

TO73_RS11650
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11650
old locus tag: TO73_2511
so part of: sequence
location: complement(7555..8400)
location: region:7555-8400:-1
so has part: feature:7555-8400:-1:exon
subclass of: SO_0000010

position:7555:-1
position: 7555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8400:-1
position: 8400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7555-8400:-1:exon

TO73_RS11650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11650
old locus tag: TO73_2511
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013704078.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQDREHPLYYLDAETLLVAIYVWVDDELKALQAQGFKLPPKQRHQKATLAELLTLAIFLLLQGQDLAKGYLAAKTTLKAYFPSLPHLSRFYRVLQKAQGLLAHLAIRLSGGQGLLQVVDLKPIPLAHGHRVHGLSLPEAAVGVGPLGAFGGYVLMPVMNERGLFFRWALLPGNARETWGRDLVADLPAVLGDRGFRWVQGVKTPPYRVRGGRVVETGWKGWMGRVRNWIETRFSVMVRSLGLHRIEARSFWGLAARVNLILLVHNLIRSRVLLRMAGVEL
SIO_010081: TO73_RS11650
subclass of: SO_0000673
so part of: TO73_RS11650
location: complement(7555..8400)
location: region:7555-8400:-1
so has part: feature:7555-8400:-1:exon

WP_003043670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7555-8400:-1:exon

TO73_RS11655
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11655
old locus tag: TO73_2512
so part of: sequence
location: 8550..9284
location: region:8550-9284:1
so has part: feature:8550-9284:1:exon
subclass of: SO_0000010

position:8550:1
position: 8550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9284:1
position: 9284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8550-9284:1:exon

TO73_RS11655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11655
old locus tag: TO73_2512
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049670.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRLFALLLALGLALAQGPEAELQQALLRTFGAWAKPFFVLDQTVYLTPEGQEAESLLTWSYADPKACRLRLEVAPSREAPRAVLVYTPERQFLRTPEGRTLPLDDRLLLEVLFVWQTGALGALFPYARVEREGEVDLPGGERALAYRVERREHLCLPKGVLEARPFVGRILVWEGRVVGEGYFSPVLGAEALLLYREFREVEGVRYPLRSETWALVEGKAVPFARGVNLELRVGLPLGEELFR
SIO_010081: TO73_RS11655
subclass of: SO_0000673
so part of: TO73_RS11655
location: 8550..9284
location: region:8550-9284:1
so has part: feature:8550-9284:1:exon

WP_003049670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8550-9284:1:exon

TO73_RS13840
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13840
old locus tag: TO73_2513
so part of: sequence
location: complement(9317..9949)
location: region:9317-9949:-1
so has part: feature:9317-9949:-1:exon
subclass of: SO_0000010

position:9317:-1
position: 9317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9949:-1
position: 9949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9317-9949:-1:exon

TO73_RS13840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13840
old locus tag: TO73_2513
inference: COORDINATES: protein motif:HMM:NF023168.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MPRTPSVTLADVKHALAELGLSPEEAGAQALRQHLGRGSLSTLQRYLELLRAEGARERSLSSAIEGTLRTLAPALKALAVQAAQGLYERSLAETLRALEEREALLEEQEGLLETLKGELEATRERLEGQEKELGEVLAREEELKAVLGGAGGADPGPGAAGGGVGGAGAGAGGGAGGPFPAGARPGARAGHPAGGGGTGGPGAGVGLPYP
SIO_010081: TO73_RS13840
subclass of: SO_0000673
so part of: TO73_RS13840
location: complement(9317..9949)
location: region:9317-9949:-1
so has part: feature:9317-9949:-1:exon

WP_196793507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9317-9949:-1:exon

TO73_RS13290
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13290
old locus tag: TO73_2514
so part of: sequence
location: complement(10067..10417)
location: region:10067-10417:-1
so has part: feature:10067-10417:-1:exon
subclass of: SO_0000010

position:10067:-1
position: 10067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10417:-1
position: 10417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10067-10417:-1:exon

TO73_RS13290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13290
old locus tag: TO73_2514
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049719.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRQDALHALGRLLTNYWPLADEVGLGDLLRPYLPDKPAWTEEDMTEALARLLADVVAEGWDRHGAPGVARHPTEEGRFVASFEGPGGPYTVEASSKREAYREARREWVYRLLTRS
SIO_010081: TO73_RS13290
subclass of: SO_0000673
so part of: TO73_RS13290
location: complement(10067..10417)
location: region:10067-10417:-1
so has part: feature:10067-10417:-1:exon

WP_015065471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10067-10417:-1:exon

TO73_RS11670
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11670
old locus tag: TO73_2515
so part of: sequence
location: complement(10414..11160)
location: region:10414-11160:-1
so has part: feature:10414-11160:-1:exon
subclass of: SO_0000010

position:10414:-1
position: 10414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11160:-1
position: 11160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10414-11160:-1:exon

TO73_RS11670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11670
old locus tag: TO73_2515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015716386.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRPEDYPLYRSQSAVLAAILRLVSRDGYVWHHVQTAPEERILAVMAKLHDRYRVLMDPQARHLRREAGLPLAQVILGPEPKGGRWPLVLLSDRDLEDEPMRRVDQTPLRWVAWRGEAWRPTYELYREEGGRWTWRLVPEFYRELLEEALHHAHRGDWPRLVGHLKGLGHLPMYRGIWAQLQEIRRRVQALWGDRHLRDPGGQWKAPPWRKAVEEWPTRPLSPIGMRLFVEEGEDRPRTLGEWLERRRG
SIO_010081: TO73_RS11670
subclass of: SO_0000673
so part of: TO73_RS11670
location: complement(10414..11160)
location: region:10414-11160:-1
so has part: feature:10414-11160:-1:exon

WP_269431966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10414-11160:-1:exon

TO73_RS11675
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11675
old locus tag: TO73_2516
so part of: sequence
location: 11224..12069
location: region:11224-12069:1
so has part: feature:11224-12069:1:exon
subclass of: SO_0000010

position:11224:1
position: 11224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12069:1
position: 12069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11224-12069:1:exon

TO73_RS11675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11675
old locus tag: TO73_2516
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013704078.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQDREHPLYYLDAETLLVAIYVWVDDELKALQAQGFKLPPKQRHQKATLAELLTLAIFLLLQGQDLAKGYLAAKTTLKAYFPSLPHLSRFYRVLQKAQGLLAHLAIRLSGGQGLLQVVDLKPIPLAHGHRVHGLSLPEAAVGVGPLGAFGGYVLMPVMNERGLFFRWALLPGNARETWGRDLVADLPAVLGDRGFRWVQGVKTPPYRVRGGRVVETGWKGWMGRVRNWIETRFSVMVRSLGLHRIEARSFWGLAARVNLILLVHNLIRSRVLLRMAGVEL
SIO_010081: TO73_RS11675
subclass of: SO_0000673
so part of: TO73_RS11675
location: 11224..12069
location: region:11224-12069:1
so has part: feature:11224-12069:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11224-12069:1:exon

TO73_RS11680
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11680
old locus tag: TO73_2518
so part of: sequence
location: 13874..15106
location: region:13874-15106:1
so has part: feature:13874-15106:1:exon
subclass of: SO_0000010

position:13874:1
position: 13874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15106:1
position: 15106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13874-15106:1:exon

TO73_RS11680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11680
old locus tag: TO73_2518
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014271896.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPEEVKGNGYQKPEVQAGISAASRAFLEALARRKRARGEEVPPLYQQLLGLLPEGPLTPEGAQEHSQGTEAVAATLPPPPPALSALPEGPIPTREELAQSPPPPEVMPQSPLAVADRLLAKGEAEGTLPPLSERAREVYRTLLALGVAWLRRLLGGKRPPRSLSQLTVFVPNDALIAVLGIPSASLYRALGELTEKGLITRAAWRTAATLRGKGGVYAAGTLYAVRLPHRTRRPRLGAEDFAYPWRDLEGDVERGKTAWRALRESKEKPLKGDAEVLEFLLDFSLSPPRQKTPLAIDSLTGLLRAKPADRRRRVEELALGLAKEFKDPGSVRFYAWVLWNALRAEIYGMWEGALALVEWAIARVREALAASLMSSRKEGIRRPGALLAHLLNQQGLLPLLRQAPQWRVA
SIO_010081: TO73_RS11680
subclass of: SO_0000673
so part of: TO73_RS11680
location: 13874..15106
location: region:13874-15106:1
so has part: feature:13874-15106:1:exon

WP_003049678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13874-15106:1:exon

TO73_RS11685
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11685
old locus tag: TO73_2519
so part of: sequence
location: complement(15171..15410)
location: region:15171-15410:-1
so has part: feature:15171-15410:-1:exon
subclass of: SO_0000010

position:15171:-1
position: 15171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15410:-1
position: 15410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15171-15410:-1:exon

TO73_RS11685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11685
old locus tag: TO73_2519
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003049681.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2442 domain-containing protein
translation: MWPEVVEVCPLEGLSLWLRFSDGREGVVDLSGLPLLGILERLKDPAFFHQVGVDPETGTAAWPGGIDLDPLVLLGALGP
SIO_010081: TO73_RS11685
subclass of: SO_0000673
so part of: TO73_RS11685
location: complement(15171..15410)
location: region:15171-15410:-1
so has part: feature:15171-15410:-1:exon

WP_231623781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15171-15410:-1:exon

TO73_RS13845
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13845
old locus tag: TO73_2520
so part of: sequence
location: complement(15419..16492)
location: region:15419-16492:-1
so has part: feature:15419-16492:-1:exon
subclass of: SO_0000010

position:15419:-1
position: 15419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16492:-1
position: 16492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15419-16492:-1:exon

TO73_RS13845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13845
old locus tag: TO73_2520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015065475.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEGMAEPVEAQEALPAGEEGTREGVGEERREKRPPHPPHQAVLFLPGVLREGLFHAERLPRGVPVALGGKALKDPQGEAGEGVFALWPRTDEGGRILSLQVASRLREPYEGPQAVVQGVLLYADRERLVLLILPKGGEGFKVGLKRARGFAARLEPKKAYRVEGRLGGPYLLAERAWPLGKYLQAKKEGQPLPPPIQGRENPYLEPREGRPKEGAEGGGEGEARKGEGAREEAKARREPPPRPKEAPKGKGLGGKPLPRRDPVRVWRAPEEPPDPAPPDLGRPPALGKGQVMGLAGTGPYYLVLLPQAVPEWWPRVERLLPEFPRRYEVRFYPDGSRAVVSGDLEALKVWYKRVLRG
SIO_010081: TO73_RS13845
subclass of: SO_0000673
so part of: TO73_RS13845
location: complement(15419..16492)
location: region:15419-16492:-1
so has part: feature:15419-16492:-1:exon

WP_269431965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15419-16492:-1:exon