Thermus aquaticus Y51MC23 plasmid pTA14, complete sequence.
type: Entry
definition: Thermus aquaticus Y51MC23 plasmid pTA14, complete sequence.
sequence version: NZ_CP010823.1
sequence date: 2022-12-23
sequence: sequence
division: CON
label: NZ_CP010823.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02441811
keyword: RefSeq
source: Thermus aquaticus Y51MC23
organism: Thermus aquaticus Y51MC23
taxonomy: Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP010823.1.\nAnnotation provided by the submitter based on the NCBI Prokaryotic\nGenome Annotation Pipeline (released 2013). Information about the\nPipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nBacteria available from David Mead (dmead@Lucigen.com).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Workbench de novo assembly v.\n 7.0\nAssembly Name :: Taq\nGenome Coverage :: 60X\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:24:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,553\nCDSs (total) :: 2,490\nGenes (coding) :: 2,440\nCDSs (with protein) :: 2,440\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 5\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 22 of 50\nPseudo Genes (incomplete) :: 39 of 50\nPseudo Genes (internal stop) :: 8 of 50\nPseudo Genes (multiple problems) :: 16 of 50\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14448
topology: circular
so has quality: SO_0000988
location: 1..14448
location: region:1-14448:1
RO_0002162: 498848

NZ_CP010823
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02441811
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Thermus aquaticus Y51MC23
author: Brumm, P.
author: Monsma, S.
author: Mead, D.A.
author: Keough, B.
author: Jasinovica, S.
author: Ferguson, E.
author: Schoenfeld, T.
author: Lodes, M.
journal: Unpublished

2
title: Direct Submission
author: Brumm, P.
author: Monsma, S.
author: Mead, D.A.
author: Keough, B.
author: Jasinovica, S.
author: Ferguson, E.
author: Schoenfeld, T.
author: Lodes, M.
journal: Submitted (20-APR-2015) Research and Development, Lucigen Corp., 2905 Parmenter Street, Middleton, WI 53562, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14448:1
position: 14448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14448:1:source
so part of: sequence
organism: Thermus aquaticus Y51MC23
mol type: genomic DNA
strain: Y51MC23
plasmid: pTA14

498848
type: Taxonomy
SIO_000068: taxonomy

TO73_RS11520
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11520
old locus tag: TO73_2601
so part of: sequence
location: complement(87..1403)
location: region:87-1403:-1
so has part: feature:87-1403:-1:exon
subclass of: SO_0000010

position:87:-1
position: 87
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1403:-1
position: 1403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87-1403:-1:exon

TO73_RS11520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11520
old locus tag: TO73_2601
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015717540.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRAYLVLVLGLVLAACAPTVTGDPFGEADLSRVLPGSGTYTPPRGVYEPLPTVSEERLTHPDPRVREEAFALLRRQRMAGDSVGPEFDYLYGRYYEASGDYRSAARYYNLGLKALFPFAFDRQRRDVWEYGYRRAEAYLRFAPDKAARDARILAEKGAPARPGELPQAARAYALLVRAEEALGNPEGVLAAAEAFYRSLQGVNWGGQVADLFWRTTLAKARALERLGRLAEAREEYARIASTRDLFLPDEVRREAREALVRLGAPKTQEAPEAPTSPPPQVSPSPPSPPVSPVPPAVSSPEKDAAEAVKGFFEAVRALDFAGINRYLSQPFYDVLQERELPGRVTSEMREKARAIRYEVARVTPPSPTNPLFKAEVIYDFGGERKLLTLYLIPLQDRGLVLLSGPLPLTVSVLLGSVDTEAVGRFLKEVHALLGLPL
SIO_010081: TO73_RS11520
subclass of: SO_0000673
so part of: TO73_RS11520
location: complement(87..1403)
location: region:87-1403:-1
so has part: feature:87-1403:-1:exon

WP_003049695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:87-1403:-1:exon

TO73_RS13595
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13595
so part of: sequence
location: 2271..2495
location: region:2271-2495:1
so has part: feature:2271-2495:1:exon
subclass of: SO_0000010

position:2271:1
position: 2271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2495:1
position: 2495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2271-2495:1:exon

TO73_RS13595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13595
inference: COORDINATES: protein motif:HMM:NF012422.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MLGPDSLTARERQVLRLVALGLCNADIARMLGVSRRTVYNWVSALQEKLGLENRVELALYYLGLLPHCRGWRGV
SIO_010081: TO73_RS13595
subclass of: SO_0000673
so part of: TO73_RS13595
location: 2271..2495
location: region:2271-2495:1
so has part: feature:2271-2495:1:exon

WP_231623780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2271-2495:1:exon

TO73_RS11530
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11530
old locus tag: TO73_2605
so part of: sequence
location: 2599..3504
location: region:2599-3504:1
so has part: feature:2599-3504:1:exon
subclass of: SO_0000010

position:2599:1
position: 2599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3504:1
position: 3504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2599-3504:1:exon

TO73_RS11530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11530
old locus tag: TO73_2605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKEQFGGGKRHSSTRRKFLEFLGTATGLLLTSCGHGFVKPINETEDPLIIELTDQEKQLLSFVSTLPKDHALRSQFIENPFATLVQHNIVPQDSWLNISKANRLLFYLVGNTELSERLGAIVQRYPALSQIQNVVTNDRLDVRFLREVEKDLTSPDSLWKRVIEDQVNVLLSDPKVREILELKIEDSQIREYASRLAAAISGNLSKAEVRPTAVYFFINFRVVANANWKVNANVHYNVNTNLNVSTNANFNYNANYNYNGNTRASGDSIGSHISAEWIQFVDLFTRHAQELTRHAQEQPGL
SIO_010081: TO73_RS11530
subclass of: SO_0000673
so part of: TO73_RS11530
location: 2599..3504
location: region:2599-3504:1
so has part: feature:2599-3504:1:exon

WP_003049700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2599-3504:1:exon

TO73_RS11535
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11535
old locus tag: TO73_2606
so part of: sequence
location: 3528..4553
location: region:3528-4553:1
so has part: feature:3528-4553:1:exon
subclass of: SO_0000010

position:3528:1
position: 3528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4553:1
position: 4553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3528-4553:1:exon

TO73_RS11535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11535
old locus tag: TO73_2606
inference: COORDINATES: protein motif:HMM:NF015983.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM protein
translation: MNTVRPWRPGPSCLTILPTFRCTAACKNCCFGSHPWVPGRIPQEDILRYIREAARFESLSLVVFSGGECFLLGDDLVEAVALATRLGLATRCVTNGYWASSEKAALYRLIELRDAGLTELNLSTGDHHAQFVPIENILHGARAAAQLGIGVAIMVELQAERRVTKQVLLEHPLAQGLFDEYDLDPNETIVESPWIAMEDGEVPYDTNCLINADNVHLRSGCNSVLSTIVVTPQKELFACCGITAEKIPEVKLGLLDQANMHDMYEAASNDFIKIWLAVDGPEKIVAWAAQKDPSIEWENRFAHQCDICRFMYQSPQIKRVIREHYQEVVGDVLLRFVLLRS
SIO_010081: TO73_RS11535
subclass of: SO_0000673
so part of: TO73_RS11535
location: 3528..4553
location: region:3528-4553:1
so has part: feature:3528-4553:1:exon

WP_040684722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3528-4553:1:exon

TO73_RS11540
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11540
old locus tag: TO73_2607
so part of: sequence
location: 4597..4905
location: region:4597-4905:1
so has part: feature:4597-4905:1:exon
subclass of: SO_0000010

position:4597:1
position: 4597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4905:1
position: 4905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4597-4905:1:exon

TO73_RS11540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11540
old locus tag: TO73_2607
inference: COORDINATES: protein motif:HMM:NF025015.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SdpI family protein
translation: MAALMIGLSIPLVQGKVPPNNTYGFRTSKTLADPSIWYEANRFSGRVAIAVSIVMIALGIALLLLDRYTKLDPNSLIVLGLAFEIVPMLVLTLVLFLYHRNL
SIO_010081: TO73_RS11540
subclass of: SO_0000673
so part of: TO73_RS11540
location: 4597..4905
location: region:4597-4905:1
so has part: feature:4597-4905:1:exon

WP_196793508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4597-4905:1:exon

TO73_RS11545
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11545
old locus tag: TO73_2608
so part of: sequence
location: 4929..6074
location: region:4929-6074:1
so has part: feature:4929-6074:1:exon
subclass of: SO_0000010

position:4929:1
position: 4929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6074:1
position: 6074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4929-6074:1:exon

TO73_RS11545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11545
old locus tag: TO73_2608
inference: COORDINATES: protein motif:HMM:NF017026.2
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyltransferase
translation: MENRADLTINAAAEPQELALRLRQLRGRLLACGYAEFASAFNPFCFSSAKWTTCRNLAFPEIRGLIDFLLLNKRAHQSYLDGLLGETWRVLLEMELAEELEGGWARLKGLSLWAYLGYLVFIDTPKPDLNVYFGDDTIGLFARLHAMPGEHCLDLCSGSGIQALHCSSFAASVDAVEINPLARQVLWCNVLLNGRHDRIQVWGGSLYDELPENRQYDLVVANPPLVPFPEELDYPFVGHGGIDGFAVTRKIIQGLPEHLSETGRAQIIGLTLADDEGDLIIEGELAELARTHDLVIRVTVLNRFPLDPSSPFFRGLVSSSQLVSPQAYDEIAARLAERLRRLNATHAAPYVLHITRSGPKGKGKVVYQNFSRVNPEGLWFV
SIO_010081: TO73_RS11545
subclass of: SO_0000673
so part of: TO73_RS11545
location: 4929..6074
location: region:4929-6074:1
so has part: feature:4929-6074:1:exon

WP_060474053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4929-6074:1:exon

TO73_RS11550
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11550
old locus tag: TO73_2609
so part of: sequence
location: 6248..7270
location: region:6248-7270:1
so has part: feature:6248-7270:1:exon
subclass of: SO_0000010

position:6248:1
position: 6248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7270:1
position: 7270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6248-7270:1:exon

TO73_RS11550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11550
old locus tag: TO73_2609
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013158093.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine hydrolase
translation: MALVDEVISALEAQLGQYLKVRAEDDGFVVSFEKGEVPAVIVLDPEGRIAQLRFLTPRPRLASLEQALAAFRELPGKVSLLVLRNGQELAGLNPDESLAVGSSFKLAILNALWEEIKAGRRSWSEVVELRPEWKSLPTGILQNWPEGAPITLHTLAALMISLSDNTASDALLAVLGREQVEHWSGQNRPLLSTREAFALKNPENRGILERYLRADEAERRRLLPELGQLPLPSPTLFTGGPVVQEVEWFFSARELCRLIEGVADLPLMAINPGPVRPKRWHRIAYKGGSEPGVLNLTAFLSSNQSHRYCVVATWNSQTILDEDLFVSLYSGLLEVLADLQ
SIO_010081: TO73_RS11550
subclass of: SO_0000673
so part of: TO73_RS11550
location: 6248..7270
location: region:6248-7270:1
so has part: feature:6248-7270:1:exon

WP_231623779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6248-7270:1:exon

TO73_RS13090
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13090
old locus tag: TO73_2610
so part of: sequence
location: 7303..7473
location: region:7303-7473:1
so has part: feature:7303-7473:1:exon
subclass of: SO_0000010

position:7303:1
position: 7303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7473:1
position: 7473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7303-7473:1:exon

TO73_RS13090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13090
old locus tag: TO73_2610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKVLLHYGWLEQARPLLNDLGRKYSVLPGYLFGMAGVIDAGVDRDLRLKPVDEAV
SIO_010081: TO73_RS13090
subclass of: SO_0000673
so part of: TO73_RS13090
location: 7303..7473
location: region:7303-7473:1
so has part: feature:7303-7473:1:exon

WP_003049710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7303-7473:1:exon

TO73_RS11560
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11560
old locus tag: TO73_2613
so part of: sequence
location: 8373..8699
location: region:8373-8699:1
so has part: feature:8373-8699:1:exon
subclass of: SO_0000010

position:8373:1
position: 8373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8699:1
position: 8699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8373-8699:1:exon

TO73_RS11560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11560
old locus tag: TO73_2613
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018110268.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVRRREVLIGPDRRLRFTMELDRGRPRFWAVQLEWYDPEEEGWVWVARYDTSGGTPHRDRNRIAAHETVDLPQDPGKAARVAETDLARRAEEYIEAYRAAKAQGKEAW
SIO_010081: TO73_RS11560
subclass of: SO_0000673
so part of: TO73_RS11560
location: 8373..8699
location: region:8373-8699:1
so has part: feature:8373-8699:1:exon

WP_003049712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8373-8699:1:exon

TO73_RS11565
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11565
old locus tag: TO73_2614
so part of: sequence
location: 8696..8968
location: region:8696-8968:1
so has part: feature:8696-8968:1:exon
subclass of: SO_0000010

position:8696:1
position: 8696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8968:1
position: 8968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8696-8968:1:exon

TO73_RS11565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11565
old locus tag: TO73_2614
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011229276.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNPAERLAELDAILTEELLEKGLLGELPEAYRLVPLPLDEPEVAQKALLWAHEAPNPEGWPLVYALFLGGRPLRLLLPEREVPLGVSQAA
SIO_010081: TO73_RS11565
subclass of: SO_0000673
so part of: TO73_RS11565
location: 8696..8968
location: region:8696-8968:1
so has part: feature:8696-8968:1:exon

WP_003049714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8696-8968:1:exon

TO73_RS11570
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11570
old locus tag: TO73_2615
so part of: sequence
location: 9000..9212
location: region:9000-9212:1
so has part: feature:9000-9212:1:exon
subclass of: SO_0000010

position:9000:1
position: 9000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9212:1
position: 9212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9000-9212:1:exon

TO73_RS11570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11570
old locus tag: TO73_2615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014960407.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2283 domain-containing protein
translation: MRITYDGEADALYIAFGEGPATVQEVAEGIALDWDSEGKLLGIEILDASKRLADLEALRRFALEVLPVLG
SIO_010081: TO73_RS11570
subclass of: SO_0000673
so part of: TO73_RS11570
location: 9000..9212
location: region:9000-9212:1
so has part: feature:9000-9212:1:exon

WP_003049716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9000-9212:1:exon

TO73_RS11575
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11575
old locus tag: TO73_2617
so part of: sequence
location: complement(9863..11056)
location: region:9863-11056:-1
so has part: feature:9863-11056:-1:exon
subclass of: SO_0000010

position:9863:-1
position: 9863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11056:-1
position: 11056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9863-11056:-1:exon

TO73_RS11575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11575
old locus tag: TO73_2617
inference: COORDINATES: protein motif:HMM:NF015076.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MERTEGQNALPHREDLSRQELAQTLSQQGLSRREIARILFQEPYLAAFQERLPRYPYATDDPRQGMRPRRKEKALEHVYIQVGRYPHAIFRIVLDLDEPTWWDAMDRIPPTLTIPNPREPWKAHIVYELDPPIWLASPKAHEGQANPFALVREVDALLRAYFGADPAYNGLLGRNPLAHAHLIGGGKLWDLPSLLEELRELTPRRRALAYLDTATYGRNCALFDQVRAFAYGVVAMYRGKPNGFELFRQAVAHEAHRLNRELFRGHPQGPLPPNEVGWVVKSVAKWTFYRYRGAKVWPVSGTGRPDRSRLSPAARALVEPLEGEKLESHLEATRPKRTANLEVANRKRRGKAEEALVEALKRLQARGEAITARALAREAGVSPATASRWLQRMRGQG
SIO_010081: TO73_RS11575
subclass of: SO_0000673
so part of: TO73_RS11575
location: complement(9863..11056)
location: region:9863-11056:-1
so has part: feature:9863-11056:-1:exon

WP_003049718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9863-11056:-1:exon

TO73_RS11580
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11580
old locus tag: TO73_2618
so part of: sequence
location: complement(11181..11534)
location: region:11181-11534:-1
so has part: feature:11181-11534:-1:exon
subclass of: SO_0000010

position:11181:-1
position: 11181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11534:-1
position: 11534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11181-11534:-1:exon

TO73_RS11580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11580
old locus tag: TO73_2618
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011229281.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRGLARLLRDVARALPDPERDPDLGPFYTDLRLRWKRDPRELPPEAWEEGLLELIAERIAEGWDRHGAPSAARDPEGEGFVASFEGPGEAVIVRAEKKREAYREARRLWVKRLLES
SIO_010081: TO73_RS11580
subclass of: SO_0000673
so part of: TO73_RS11580
location: complement(11181..11534)
location: region:11181-11534:-1
so has part: feature:11181-11534:-1:exon

WP_003049719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11181-11534:-1:exon

TO73_RS11585
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS11585
old locus tag: TO73_2619
so part of: sequence
location: complement(11531..12298)
location: region:11531-12298:-1
so has part: feature:11531-12298:-1:exon
subclass of: SO_0000010

position:11531:-1
position: 11531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12298:-1
position: 12298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11531-12298:-1:exon

TO73_RS11585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS11585
old locus tag: TO73_2619
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011228385.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTADPADYRLYRSQTAVMAAIRQAVAKGYRYYLVATTPEEKVLGAVAKLHERHRILLSPEARRARKEAGLPVAQLFLGPEPRGGVWPYALLATKRLEGEEMRSAEGKRPLQWVAWRKEAWLPTYELRKHEDTGRWTWYLTEAFYRELLEEALHHARKGDWPRLVGHLKTLGHLPMFGGVFQQITDIRRRVQKLWGDTHLRSPEGQWKAPPWKKALEDWPKRPLAASVYLYVDPEVDGPRPRTLGEWWEARRKEGA
SIO_010081: TO73_RS11585
subclass of: SO_0000673
so part of: TO73_RS11585
location: complement(11531..12298)
location: region:11531-12298:-1
so has part: feature:11531-12298:-1:exon

WP_003049721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11531-12298:-1:exon

TO73_RS13285
type: Gene
subclass of: SO_0000704
RO_0002162: 498848
locus tag: TO73_RS13285
old locus tag: TO73_2620
so part of: sequence
location: complement(12300..12530)
location: region:12300-12530:-1
so has part: feature:12300-12530:-1:exon
subclass of: SO_0000010

position:12300:-1
position: 12300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12530:-1
position: 12530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12300-12530:-1:exon

TO73_RS13285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 498848
locus tag: TO73_RS13285
old locus tag: TO73_2620
inference: COORDINATES: protein motif:HMM:NF013561.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MSALSRLEKRLKEKAEPRLTERLTIRLDKATYEALESLAKEHNLSVSELAREVLTMLAEEYRSERPKRQPKLFSEE
SIO_010081: TO73_RS13285
subclass of: SO_0000673
so part of: TO73_RS13285
location: complement(12300..12530)
location: region:12300-12530:-1
so has part: feature:12300-12530:-1:exon

WP_040684726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12300-12530:-1:exon