Thermus aquaticus Y51MC23 plasmid pTA14, complete sequence.
Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus.
Complete Genome Sequence of Thermus aquaticus Y51MC23
Submitted (20-APR-2015) Research and Development, Lucigen Corp., 2905 Parmenter Street, Middleton, WI 53562, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP010823.1.\nAnnotation provided by the submitter based on the NCBI Prokaryotic\nGenome Annotation Pipeline (released 2013). Information about the\nPipeline can be found here:\nhttp://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nBacteria available from David Mead (dmead@Lucigen.com).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Genomics Workbench de novo assembly v.\n 7.0\nAssembly Name :: Taq\nGenome Coverage :: 60X\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:24:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,553\nCDSs (total) :: 2,490\nGenes (coding) :: 2,440\nCDSs (with protein) :: 2,440\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 5\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 22 of 50\nPseudo Genes (incomplete) :: 39 of 50\nPseudo Genes (internal stop) :: 8 of 50\nPseudo Genes (multiple problems) :: 16 of 50\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015717540.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025015.2
COORDINATES: protein motif:HMM:NF017026.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013158093.1
COORDINATES: similar to AA sequence:RefSeq:WP_018110268.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229276.1
COORDINATES: similar to AA sequence:RefSeq:WP_014960407.1
COORDINATES: protein motif:HMM:NF015076.2
COORDINATES: similar to AA sequence:RefSeq:WP_011229281.1
COORDINATES: similar to AA sequence:RefSeq:WP_011228385.1
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]