Hymenobacter tibetensis strain KACC 21982 plasmid unnamed3, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Submitted (30-MAR-2022) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP094672.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2022\nAssembly Method :: SMRTlink v. 10.1.0.119588\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 180.5x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/07/2022 06:57:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,060\nCDSs (total) :: 4,997\nGenes (coding) :: 4,971\nCDSs (with protein) :: 4,971\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 4 of 26\nPseudo Genes (incomplete) :: 22 of 26\nPseudo Genes (internal stop) :: 1 of 26\nPseudo Genes (multiple problems) :: 1 of 26\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012866606.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014058211.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:NF012931.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008512248.1
SusD/RagB family nutrient-binding outer membrane lipoprotein
COORDINATES: protein motif:HMM:TIGR04056.1
GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: protein motif:HMM:NF012907.2
COORDINATES: similar to AA sequence:RefSeq:WP_008243081.1
COORDINATES: similar to AA sequence:RefSeq:WP_020533842.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018616866.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010343231.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768351.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_010665306.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: similar to AA sequence:RefSeq:WP_007568466.1
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_012789263.1
COORDINATES: similar to AA sequence:RefSeq:WP_015846580.1
COORDINATES: similar to AA sequence:RefSeq:WP_008237139.1
COORDINATES: similar to AA sequence:RefSeq:WP_014221153.1
COORDINATES: similar to AA sequence:RefSeq:WP_013663907.1
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_012793208.1
COORDINATES: protein motif:HMM:NF025605.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF016817.2
COORDINATES: protein motif:HMM:NF013592.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012629772.1
COORDINATES: protein motif:HMM:NF012580.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695250.1
COORDINATES: similar to AA sequence:RefSeq:WP_019947832.1
COORDINATES: similar to AA sequence:RefSeq:WP_004306680.1
COORDINATES: similar to AA sequence:RefSeq:WP_020717992.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0051119 - sugar transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012876385.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012780924.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949431.1
COORDINATES: similar to AA sequence:RefSeq:WP_020569981.1
COORDINATES: similar to AA sequence:RefSeq:WP_014680464.1
COORDINATES: similar to AA sequence:RefSeq:WP_014680463.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF014567.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: similar to AA sequence:RefSeq:WP_012790526.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008992225.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008992226.1
COORDINATES: similar to AA sequence:RefSeq:WP_012026382.1
COORDINATES: similar to AA sequence:RefSeq:WP_008122610.1
COORDINATES: similar to AA sequence:RefSeq:WP_019944527.1
COORDINATES: similar to AA sequence:RefSeq:WP_015333318.1
COORDINATES: similar to AA sequence:RefSeq:WP_007805489.1
COORDINATES: similar to AA sequence:RefSeq:WP_012792227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931167.1
COORDINATES: similar to AA sequence:RefSeq:WP_015329257.1
COORDINATES: similar to AA sequence:RefSeq:WP_018621298.1
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019947019.1
COORDINATES: protein motif:HMM:NF024974.2
gliding motility-associated C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR03519.1
type IX secretion system membrane protein PorP/SprF
T9SS type A sorting domain-containing protein
COORDINATES: protein motif:HMM:NF024957.2
COORDINATES: similar to AA sequence:RefSeq:WP_013235571.1
COORDINATES: similar to AA sequence:RefSeq:WP_001206197.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_018621140.1
antibiotic biosynthesis monooxygenase family protein
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: similar to AA sequence:RefSeq:WP_014221404.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251269.1
COORDINATES: similar to AA sequence:RefSeq:WP_013666506.1
GO:0008800 - beta-lactamase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019949229.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008990281.1
cellulase N-terminal Ig-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013579890.1
COORDINATES: similar to AA sequence:RefSeq:WP_012926925.1
xanthine dehydrogenase family protein subunit M