Hymenobacter tibetensis strain KACC 21982 plasmid unnamed2, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Submitted (30-MAR-2022) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP094671.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2022\nAssembly Method :: SMRTlink v. 10.1.0.119588\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 180.5x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/07/2022 06:57:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,060\nCDSs (total) :: 4,997\nGenes (coding) :: 4,971\nCDSs (with protein) :: 4,971\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 4 of 26\nPseudo Genes (incomplete) :: 22 of 26\nPseudo Genes (internal stop) :: 1 of 26\nPseudo Genes (multiple problems) :: 1 of 26\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002981079.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037203.2
COORDINATES: similar to AA sequence:RefSeq:WP_012929335.1
COORDINATES: protein motif:HMM:NF037742.2
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: protein motif:HMM:NF014180.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF020036.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF024949.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF024982.2
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_007653932.1
COORDINATES: similar to AA sequence:RefSeq:WP_019947887.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_018479437.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012794127.1
COORDINATES: similar to AA sequence:RefSeq:WP_008146633.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019991234.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991233.1
COORDINATES: similar to AA sequence:RefSeq:WP_020597553.1
COORDINATES: similar to AA sequence:RefSeq:WP_020597554.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012927177.1
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_020597556.1
GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_012927179.1
COORDINATES: similar to AA sequence:RefSeq:WP_020597558.1
COORDINATES: similar to AA sequence:RefSeq:WP_012927181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008509767.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008201007.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013767641.1
COORDINATES: similar to AA sequence:RefSeq:WP_005781779.1
COORDINATES: similar to AA sequence:RefSeq:WP_014022669.1
COORDINATES: similar to AA sequence:RefSeq:WP_008585663.1
COORDINATES: similar to AA sequence:RefSeq:WP_014790138.1
COORDINATES: protein motif:HMM:NF019193.2
beta-N-acetylglucosaminidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004353592.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014680448.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009435938.1
COORDINATES: similar to AA sequence:RefSeq:WP_007279744.1
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: similar to AA sequence:RefSeq:WP_018622943.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0015535 - fucose:proton symporter activity [Evidence IEA]
GO:0015756 - fucose transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020605594.1
COORDINATES: similar to AA sequence:RefSeq:WP_015809816.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017259993.1
COORDINATES: similar to AA sequence:RefSeq:WP_019991256.1
COORDINATES: similar to AA sequence:RefSeq:WP_019944364.1
COORDINATES: similar to AA sequence:RefSeq:WP_014791181.1
COORDINATES: similar to AA sequence:RefSeq:WP_010602589.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009964936.1
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013666553.1
aminoglycoside phosphotransferase family protein
COORDINATES: protein motif:HMM:NF027338.2
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0016052 - carbohydrate catabolic process [Evidence IEA]
carbohydrate-binding family 9-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_008623115.1
COORDINATES: similar to AA sequence:RefSeq:WP_019942282.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF026908.2
COORDINATES: similar to AA sequence:RefSeq:WP_006725169.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_020182501.1
COORDINATES: similar to AA sequence:RefSeq:WP_012188459.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245365.1
limonene-1,2-epoxide hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007805491.1
COORDINATES: protein motif:HMM:NF033542.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020607017.1
COORDINATES: protein motif:HMM:NF017773.2