Hymenobacter tibetensis strain KACC 21982 plasmid unnamed1, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Submitted (30-MAR-2022) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP094670.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2022\nAssembly Method :: SMRTlink v. 10.1.0.119588\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 180.5x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/07/2022 06:57:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,060\nCDSs (total) :: 4,997\nGenes (coding) :: 4,971\nCDSs (with protein) :: 4,971\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 4 of 26\nPseudo Genes (incomplete) :: 22 of 26\nPseudo Genes (internal stop) :: 1 of 26\nPseudo Genes (multiple problems) :: 1 of 26\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015265447.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR04183.1
T9SS type A sorting domain-containing protein
COORDINATES: protein motif:HMM:NF037732.2
COORDINATES: protein motif:HMM:NF017638.2
COORDINATES: similar to AA sequence:RefSeq:WP_013684919.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019946455.1
COORDINATES: similar to AA sequence:RefSeq:WP_019946454.1
COORDINATES: similar to AA sequence:RefSeq:WP_002618905.1
COORDINATES: protein motif:HMM:TIGR00229.1
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: similar to AA sequence:RefSeq:WP_007213612.1
COORDINATES: similar to AA sequence:RefSeq:WP_009285622.1
COORDINATES: protein motif:HMM:NF015863.2
COORDINATES: similar to AA sequence:RefSeq:WP_013925903.1
COORDINATES: similar to AA sequence:RefSeq:WP_015811714.1
COORDINATES: protein motif:HMM:NF013135.2
cellulose binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015210499.1
COORDINATES: similar to AA sequence:RefSeq:WP_003010608.1
COORDINATES: similar to AA sequence:RefSeq:WP_020596220.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019948521.1
COORDINATES: similar to AA sequence:RefSeq:WP_019948522.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015332001.1
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: protein motif:HMM:NF016807.2
COORDINATES: similar to AA sequence:RefSeq:WP_008504990.1
GO:0004650 - polygalacturonase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027479.2
COORDINATES: similar to AA sequence:RefSeq:WP_019987861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012930874.1
COORDINATES: similar to AA sequence:RefSeq:WP_008505805.1
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_010663817.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF016497.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007478259.1
COORDINATES: similar to AA sequence:RefSeq:WP_008655947.1
COORDINATES: similar to AA sequence:RefSeq:WP_009281657.1
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017318392.1
COORDINATES: similar to AA sequence:RefSeq:WP_008237230.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020532610.1
COORDINATES: similar to AA sequence:RefSeq:WP_008673345.1
COORDINATES: protein motif:HMM:TIGR04056.1
COORDINATES: protein motif:HMM:NF019592.2
COORDINATES: similar to AA sequence:RefSeq:WP_003970528.1
COORDINATES: similar to AA sequence:RefSeq:WP_017733687.1
COORDINATES: similar to AA sequence:RefSeq:WP_011439427.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002616054.1
COORDINATES: similar to AA sequence:RefSeq:WP_008585656.1
COORDINATES: similar to AA sequence:RefSeq:WP_020715544.1
COORDINATES: similar to AA sequence:RefSeq:WP_009283467.1
putative oxidoreductase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_003012250.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: similar to AA sequence:RefSeq:WP_012928075.1
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: similar to AA sequence:RefSeq:WP_007660049.1
COORDINATES: similar to AA sequence:RefSeq:WP_008245988.1
COORDINATES: protein motif:HMM:NF027309.2
COORDINATES: similar to AA sequence:RefSeq:WP_013634747.1