Gloeothece verrucosa PCC 7822 plasmid Cy782204, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Gloeothece; Gloeothece verrucosa.
Complete sequence of Plasmid4 of Cyanothece sp. PCC 7822
Submitted (09-SEP-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002202.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4042956\nSource DNA and organism available from Louis Sherman\n(lsherman@purdue.edu)\nContacts: Louis Sherman (lsherman@purdue.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Cyanothece sp. PCC 7822\ncollection_date :: Missing\nlat_lon :: 20.237556 84.270018\ndepth :: Missing\nalt_elev :: Missing\ncountry :: India\nenvironment :: Fresh water\nnum_replicons :: 7\nref_biomaterial :: PCC 7822\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi01597\nGreengenes ID :: 356043\nIsolation Site :: Rice fields in Cuttack, Orissa, India\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: Sanger/454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 03:51:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,005\nCDSs (total) :: 6,942\nGenes (coding) :: 6,830\nCDSs (with protein) :: 6,830\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 112\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 38 of 113\nPseudo Genes (incomplete) :: 71 of 113\nPseudo Genes (internal stop) :: 25 of 113\nPseudo Genes (multiple problems) :: 20 of 113\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Gloeothece verrucosa
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024850.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012618.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025056.2
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012595172.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: protein motif:HMM:NF020859.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015259.2
COORDINATES: protein motif:HMM:NF020305.2
Tn7 transposase TnsA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006624890.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015217851.1
COORDINATES: similar to AA sequence:RefSeq:WP_006527023.1
COORDINATES: similar to AA sequence:RefSeq:WP_002790317.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217850.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015201141.1
COORDINATES: similar to AA sequence:RefSeq:WP_015184221.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015176480.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599348.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_006512370.1
COORDINATES: similar to AA sequence:RefSeq:WP_006512369.1
COORDINATES: similar to AA sequence:RefSeq:WP_006512368.1