Campylobacter peloridis strain 2016D-0074 plasmid pLMG-23910-1.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
Campylobacter and Helicobacter PacBio genomes
Submitted (09-OCT-2020) Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30329, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP063080.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 76.719x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:25:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,711\nCDSs (total) :: 1,653\nGenes (coding) :: 1,635\nCDSs (with protein) :: 1,635\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 10 of 18\nPseudo Genes (incomplete) :: 8 of 18\nPseudo Genes (internal stop) :: 1 of 18\nPseudo Genes (multiple problems) :: 1 of 18\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_005867974.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023351.2
inverse autotransporter beta-barrel domain-containing protein
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_012662275.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012662274.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662272.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_012662271.1
cag pathogenicity island Cag12 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012662270.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662269.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662268.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012662267.1
COORDINATES: similar to AA sequence:RefSeq:WP_002790208.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_002804396.1
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: similar to AA sequence:RefSeq:WP_012662260.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662259.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662258.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_004319076.1
COORDINATES: similar to AA sequence:RefSeq:WP_002843359.1
COORDINATES: similar to AA sequence:RefSeq:WP_010790900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662254.1
COORDINATES: similar to AA sequence:RefSeq:WP_002801139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662251.1
COORDINATES: similar to AA sequence:RefSeq:WP_002864936.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662287.1
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_002779676.1
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: protein motif:HMM:NF015210.2
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002883458.1
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002841954.1
COORDINATES: similar to AA sequence:RefSeq:WP_002823310.1
frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.