Xanthomonas translucens pv. undulosa strain XtLr8 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genomics-Enabled Novel Insight into the Pathovar-Specific Population Structure of the Bacterial Leaf Streak Pathogen Xanthomonas translucens in Small Grain Cereals
Submitted (30-OCT-2020) Department of Resources and Environment, Shanghai Jiao Tong University, 800 Dongchuan RD. Minhang District, Shanghai, Shanghai 200240, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP063995.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2020\nAssembly Method :: Flye v. 2.5\nAssembly Name :: Lr8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 490x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/05/2023 04:48:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,041\nCDSs (total) :: 3,978\nGenes (coding) :: 3,797\nCDSs (with protein) :: 3,797\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 181\nCDSs (without protein) :: 181\nPseudo Genes (ambiguous residues) :: 0 of 181\nPseudo Genes (frameshifted) :: 82 of 181\nPseudo Genes (incomplete) :: 130 of 181\nPseudo Genes (internal stop) :: 34 of 181\nPseudo Genes (multiple problems) :: 61 of 181\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000914645.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005220994.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_000101711.1
COORDINATES: similar to AA sequence:RefSeq:WP_000138004.1
COORDINATES: similar to AA sequence:RefSeq:WP_007247250.1
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_019692571.1
COORDINATES: similar to AA sequence:RefSeq:WP_001001035.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010368869.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241493.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_004861683.1
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF022347.2
COORDINATES: similar to AA sequence:RefSeq:WP_010280429.1
COORDINATES: similar to AA sequence:RefSeq:WP_006952651.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017171841.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003491420.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042066.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158332.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158333.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_011486349.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158334.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017166857.1
COORDINATES: similar to AA sequence:RefSeq:WP_011037062.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113411.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF019069.2
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: protein motif:HMM:NF013014.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_000462629.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182936.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_000751606.1
COORDINATES: protein motif:HMM:NF033894.1