Xanthomonas fragariae strain PD885 plasmid pPD885-27, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Submitted (11-MAY-2017) JLU, JLU, Justus-Liebig-University Giessen, Bioinformatics and Systems Biology, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nLT853884.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 20:08:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,084\nCDSs (total) :: 3,940\nGenes (coding) :: 3,292\nCDSs (with protein) :: 3,292\nGenes (RNA) :: 144\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 86\nPseudo Genes (total) :: 648\nCDSs (without protein) :: 648\nPseudo Genes (ambiguous residues) :: 0 of 648\nPseudo Genes (frameshifted) :: 393 of 648\nPseudo Genes (incomplete) :: 414 of 648\nPseudo Genes (internal stop) :: 173 of 648\nPseudo Genes (multiple problems) :: 272 of 648\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018574826.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006449368.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_006449365.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF023087.2
COORDINATES: similar to AA sequence:RefSeq:WP_019923820.1
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: similar to AA sequence:RefSeq:WP_005918372.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163243.1
COORDINATES: similar to AA sequence:RefSeq:WP_018990404.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019564015.1
COORDINATES: similar to AA sequence:RefSeq:WP_002805365.1
COORDINATES: similar to AA sequence:RefSeq:WP_013641292.1
COORDINATES: similar to AA sequence:RefSeq:WP_011382086.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006450755.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804321.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918380.1
COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017158366.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804331.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054812.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804333.1
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_011051576.1
COORDINATES: similar to AA sequence:RefSeq:WP_006322397.1
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_017166843.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804300.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804301.1
ParC family partition-associated protein